Csor.00g004560 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g004560
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Ecotropic viral integration site protein
Location	Csor_Chr08: 3292317 .. 3293730 (+)
RNA-Seq Expression	Csor.00g004560
Synteny	Csor.00g004560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAGAAATGGAAGGCGGACGAGCAACTATTCCAGCTTCTTGCCAGTCTTCTTCACCAGGTCACAATTTCCCTCCACTTTCGCTCTTATTTCCCTATGTTCATTTCATTTGCTGTGATTTACCTTGTATGGCTTTCTAATTCTGTTCGTGATTGGATCGCTGGAACTTGCCTGATGATTGATGAAACATTTTGTGATTTTATAAGTGTCGGGGTTTCAAGACGATGGATCTAACCTCATTCATGGGGAGGAGGTGTGAAAACTTCTCCCTAGTAGATGCGTTTTAAAAATGTTGAGGGAAAATCCAAAATGCAAGACACAAAGAGGACAGTTTTTGGTAACGGTGAACTTAAAACGTTGCATTATAGGTTTACACTAGAGTTGGGAAAGGCTGGGAATAGGTAACTTAGGGAGAGGAACAATATATCTTGATGAAATTGCTGTAGAGATTTACACCACATGATTTTCGTCACACTGTTCCCTTAGGCCCTTAGGGAATTGCTCTGGGAAGCAGTTACGTATTCTGATTGTTTGGCACCTAATTAATACAGTGAGTAGAAAATTTCTAGTCTATAACGGTCAACACCTTTGCCTTTCTTTGACCATGTAATGAGAAGAGAAAGTTTCCAAACTTGTTATGAACTTATGATCCACCCCTTTGGACGTAGGTTGTATTCACCTTCACATTTGGGTACGGTATTATGTTTTTTGTTTCAATGAGTACCCATTGTGTAGTATGTTGGAAACTGCGATCCTCCACCGATAATGTCCACCTTTTAGCATAAGCTCTTATAGCAGCTTTACTTTTGGTTCTCAAAAGGCTTTGTACCAATTGGAGATAGTGTTCCTTACTTATAAATTCATGCTCTTCTTCTTAATCAGTCGAGGTAGGACTAATTCTTTCAAAAATCCTCGGCATAAGTCCTAGCCAGGAAATGTTTTGAGCTTCTCTGCTCTTTTCTTTCCTAAGATACAATTATCTTGCAGGTGGAATCACTGACCAACCAGGAGGAAGTTGAACTTCGTATGAAGATCGAAGCCCTTGGACTTGAAGTAACAAAAGTACCCTCAAAGTCCTTAAAGCAGCTCGATGAAGTCCGTCTGGTTTCCTTCATAAACTCATTGCATTTATCAACATTTTCTTGAAGAGAATGAATCTAATGTCTAAAAAGTCCATTTCCTATCTATTCAGATGGAACTTGCCAAGGAGTTGGATAAGTTATCTGAAAAGCTAGACGATGTGGATGAAATGATTTCTTCAGCAATGGCTGCTGACCCACAGGTGCAGTCTCTTTTGAGTCATACTGCTGATATTTGGATGCCGGTGATAACTGCATCCACTGATGACCGGCGGAAGTTTACAGCTTCAGCTGGAGAAAATTCAGAAACAGAAAAGAATTGTGCAAGTTAG

mRNA sequence

ATGGCCGAGAAATGGAAGGCGGACGAGCAACTATTCCAGCTTCTTGCCAGTCTTCTTCACCAGGTGGAATCACTGACCAACCAGGAGGAAGTTGAACTTCGTATGAAGATCGAAGCCCTTGGACTTGAAGTAACAAAAGTACCCTCAAAGTCCTTAAAGCAGCTCGATGAAATGGAACTTGCCAAGGAGTTGGATAAGTTATCTGAAAAGCTAGACGATGTGGATGAAATGATTTCTTCAGCAATGGCTGCTGACCCACAGGTGCAGTCTCTTTTGAGTCATACTGCTGATATTTGGATGCCGGTGATAACTGCATCCACTGATGACCGGCGGAAGTTTACAGCTTCAGCTGGAGAAAATTCAGAAACAGAAAAGAATTGTGCAAGTTAG

Coding sequence (CDS)

ATGGCCGAGAAATGGAAGGCGGACGAGCAACTATTCCAGCTTCTTGCCAGTCTTCTTCACCAGGTGGAATCACTGACCAACCAGGAGGAAGTTGAACTTCGTATGAAGATCGAAGCCCTTGGACTTGAAGTAACAAAAGTACCCTCAAAGTCCTTAAAGCAGCTCGATGAAATGGAACTTGCCAAGGAGTTGGATAAGTTATCTGAAAAGCTAGACGATGTGGATGAAATGATTTCTTCAGCAATGGCTGCTGACCCACAGGTGCAGTCTCTTTTGAGTCATACTGCTGATATTTGGATGCCGGTGATAACTGCATCCACTGATGACCGGCGGAAGTTTACAGCTTCAGCTGGAGAAAATTCAGAAACAGAAAAGAATTGTGCAAGTTAG

Protein sequence

MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGENSETEKNCAS

Homology

[Close]

BLAST of Csor.00g004560 vs. NCBI nr
Match: XP_023004866.1 (uncharacterized protein LOC111498046 [Cucurbita maxima] >KAG6593335.1 hypothetical protein SDJN03_12811, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238 bits (608), Expect = 6.78e-79
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL 60
           MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL
Sbjct: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL 60

Query: 61  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN 120
           AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN
Sbjct: 61  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN 120

Query: 121 SETEKNCAS 129
           SETEKNCAS
Sbjct: 121 SETEKNCAS 129

[Close]

BLAST of Csor.00g004560 vs. NCBI nr
Match: KAG7025681.1 (hypothetical protein SDJN02_12179, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233 bits (594), Expect = 1.02e-76
Identity = 129/132 (97.73%), Postives = 129/132 (97.73%), Query Frame = 0


Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDE--- 60
           MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDE   
Sbjct: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEVRL 60

Query: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120
           MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA
Sbjct: 61  MELAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASA 120

Query: 121 GENSETEKNCAS 129
           GENSETEKNCAS
Sbjct: 121 GENSETEKNCAS 132

[Close]

BLAST of Csor.00g004560 vs. NCBI nr
Match: XP_022960425.1 (uncharacterized protein LOC111461159 [Cucurbita moschata])

HSP 1 Score: 232 bits (591), Expect = 2.74e-76
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEAL-GLEVTKVPSKSLKQLDEME 60
           MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEAL GLEVTKVPSKSLKQLDEME
Sbjct: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALFGLEVTKVPSKSLKQLDEME 60

Query: 61  LAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGE 120
           LAKELDKLSEKLDDV+EMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGE
Sbjct: 61  LAKELDKLSEKLDDVNEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGE 120

Query: 121 NSETEKNCAS 129
           NSETEKNCAS
Sbjct: 121 NSETEKNCAS 130

[Close]

BLAST of Csor.00g004560 vs. NCBI nr
Match: XP_023514533.1 (uncharacterized protein LOC111778791 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231 bits (590), Expect = 3.77e-76
Identity = 126/129 (97.67%), Postives = 127/129 (98.45%), Query Frame = 0


Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL 60
           MA  WKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL
Sbjct: 1   MAGTWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL 60

Query: 61  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN 120
           AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN
Sbjct: 61  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN 120

Query: 121 SETEKNCAS 129
           SETEK+CAS
Sbjct: 121 SETEKSCAS 129

[Close]

BLAST of Csor.00g004560 vs. NCBI nr
Match: XP_022953424.1 (uncharacterized protein LOC111455983 [Cucurbita moschata] >XP_023547946.1 uncharacterized protein LOC111806741 [Cucurbita pepo subsp. pepo] >KAG6575661.1 hypothetical protein SDJN03_26300, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211 bits (536), Expect = 6.45e-68
Identity = 115/129 (89.15%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL 60
           M ++ KADEQLF LLASLLHQVESLTNQEEVELR KIEALGLEVTKVPSKSLKQLDE+E+
Sbjct: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEI 60

Query: 61  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN 120
           AKELDKLSEKLDDVDEMISSAMAADPQVQSLLS TADIWMPVITAS D+RRKFTAS GEN
Sbjct: 61  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGEN 120

Query: 121 SETEKNCAS 129
           SETE+NC S
Sbjct: 121 SETEENCGS 129

[Close]

BLAST of Csor.00g004560 vs. ExPASy TrEMBL
Match: A0A6J1KTB9 (uncharacterized protein LOC111498046 OS=Cucurbita maxima OX=3661 GN=LOC111498046 PE=4 SV=1)

HSP 1 Score: 238 bits (608), Expect = 3.28e-79
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL 60
           MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL
Sbjct: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL 60

Query: 61  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN 120
           AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN
Sbjct: 61  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN 120

Query: 121 SETEKNCAS 129
           SETEKNCAS
Sbjct: 121 SETEKNCAS 129

[Close]

BLAST of Csor.00g004560 vs. ExPASy TrEMBL
Match: A0A6J1H914 (uncharacterized protein LOC111461159 OS=Cucurbita moschata OX=3662 GN=LOC111461159 PE=4 SV=1)

HSP 1 Score: 232 bits (591), Expect = 1.33e-76
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEAL-GLEVTKVPSKSLKQLDEME 60
           MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEAL GLEVTKVPSKSLKQLDEME
Sbjct: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALFGLEVTKVPSKSLKQLDEME 60

Query: 61  LAKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGE 120
           LAKELDKLSEKLDDV+EMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGE
Sbjct: 61  LAKELDKLSEKLDDVNEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGE 120

Query: 121 NSETEKNCAS 129
           NSETEKNCAS
Sbjct: 121 NSETEKNCAS 130

[Close]

BLAST of Csor.00g004560 vs. ExPASy TrEMBL
Match: A0A6J1GPL7 (uncharacterized protein LOC111455983 OS=Cucurbita moschata OX=3662 GN=LOC111455983 PE=4 SV=1)

HSP 1 Score: 211 bits (536), Expect = 3.12e-68
Identity = 115/129 (89.15%), Postives = 121/129 (93.80%), Query Frame = 0


Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL 60
           M ++ KADEQLF LLASLLHQVESLTNQEEVELR KIEALGLEVTKVPSKSLKQLDE+E+
Sbjct: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEI 60

Query: 61  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN 120
           AKELDKLSEKLDDVDEMISSAMAADPQVQSLLS TADIWMPVITAS D+RRKFTAS GEN
Sbjct: 61  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGEN 120

Query: 121 SETEKNCAS 129
           SETE+NC S
Sbjct: 121 SETEENCGS 129

[Close]

BLAST of Csor.00g004560 vs. ExPASy TrEMBL
Match: A0A6J1JXP7 (uncharacterized protein LOC111488434 OS=Cucurbita maxima OX=3661 GN=LOC111488434 PE=4 SV=1)

HSP 1 Score: 208 bits (530), Expect = 2.57e-67
Identity = 113/127 (88.98%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL 60
           M ++ KADEQLF LLASLLHQVESLTNQEEVELR KIEALGLEVTKVPSKSLKQLDE+E+
Sbjct: 1   MDQEGKADEQLFNLLASLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEI 60

Query: 61  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN 120
           +KELDKLSEKLDDVDEMISSAMAADPQVQSLLS TADIWMPVITAS D+RRKFTAS GEN
Sbjct: 61  SKELDKLSEKLDDVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRKFTASVGEN 120

Query: 121 SETEKNC 127
           SETE+NC
Sbjct: 121 SETEENC 127

[Close]

BLAST of Csor.00g004560 vs. ExPASy TrEMBL
Match: A0A0A0KBJ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429570 PE=4 SV=1)

HSP 1 Score: 206 bits (524), Expect = 2.11e-66
Identity = 113/129 (87.60%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MAEKWKADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMEL 60
           MA + KADEQLFQLLA+LLHQVESLTNQEEVELR KIEALGLEVTKVPSKSLKQLDE+E+
Sbjct: 1   MAHEGKADEQLFQLLANLLHQVESLTNQEEVELRTKIEALGLEVTKVPSKSLKQLDELEI 60

Query: 61  AKELDKLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGEN 120
           AKELDKLSEKLD+VDEMISSAMAADPQVQSLLS TADIWMPVITAS D+RR FT S GEN
Sbjct: 61  AKELDKLSEKLDNVDEMISSAMAADPQVQSLLSDTADIWMPVITASADERRNFTPSVGEN 120

Query: 121 SETEKNCAS 129
           SETE NC S
Sbjct: 121 SETEANCES 129

[Close]

BLAST of Csor.00g004560 vs. TAIR 10
Match: AT2G44360.1 (unknown protein; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 160.6 bits (405), Expect = 8.4e-40
Identity = 87/117 (74.36%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 6   KADEQLFQLLASLLHQVESLTNQEEVELRMKIEALGLEVTKVPSKSLKQLDEMELAKELD 65
           K DEQLFQLL+ LL QVESLTN EEVELR KIEALGLEVTKVPSKS + L+E+E+AKELD
Sbjct: 5   KPDEQLFQLLSGLLQQVESLTNTEEVELRSKIEALGLEVTKVPSKSAQHLNEVEIAKELD 64

Query: 66  KLSEKLDDVDEMISSAMAADPQVQSLLSHTADIWMPVITASTDDRRKFTASAGENSE 123
           KLS KLDDVDEMISSA+A+DPQVQ+LLS TAD+WMPVITA  ++R  FTAS  ++ +
Sbjct: 65  KLSAKLDDVDEMISSAIASDPQVQTLLSGTADVWMPVITAGAEERLNFTASLADDDD 121

The following BLAST results are available for this feature:

BLAST of Csor.00g004560 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g004560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023004866.1	6.78e-79	100.00	uncharacterized protein LOC111498046 [Cucurbita maxima] >KAG6593335.1 hypothetic...	[more]
KAG7025681.1	1.02e-76	97.73	hypothetical protein SDJN02_12179, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022960425.1	2.74e-76	98.46	uncharacterized protein LOC111461159 [Cucurbita moschata]	[more]
XP_023514533.1	3.77e-76	97.67	uncharacterized protein LOC111778791 [Cucurbita pepo subsp. pepo]	[more]
XP_022953424.1	6.45e-68	89.15	uncharacterized protein LOC111455983 [Cucurbita moschata] >XP_023547946.1 unchar...	[more]

BLAST of Csor.00g004560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTB9	3.28e-79	100.00	uncharacterized protein LOC111498046 OS=Cucurbita maxima OX=3661 GN=LOC111498046...	[more]
A0A6J1H914	1.33e-76	98.46	uncharacterized protein LOC111461159 OS=Cucurbita moschata OX=3662 GN=LOC1114611...	[more]
A0A6J1GPL7	3.12e-68	89.15	uncharacterized protein LOC111455983 OS=Cucurbita moschata OX=3662 GN=LOC1114559...	[more]
A0A6J1JXP7	2.57e-67	88.98	uncharacterized protein LOC111488434 OS=Cucurbita maxima OX=3661 GN=LOC111488434...	[more]
A0A0A0KBJ8	2.11e-66	87.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429570 PE=4 SV=1	[more]

BLAST of Csor.00g004560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44360.1	8.4e-40	74.36	unknown protein; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..84
None	No IPR available	PANTHER	PTHR37727	ECOTROPIC VIRAL INTEGRATION SITE PROTEIN	coord: 1..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g004560.m01	Csor.00g004560.m01	mRNA