Csor.00g003750 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g003750
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description(6-4)DNA photolyase
LocationCsor_Chr08: 3715091 .. 3715447 (+)
RNA-Seq ExpressionCsor.00g003750
SyntenyCsor.00g003750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACCAATCTTCCCGTTTTCCATGCCGCTCCGATAAGGGCTTCGTCATCTGGAAAATCCGAACCAAATCGCCGGAAGGCTGCCGCGCCAAAGTGGTGGTCACCGATCTTCGGATGGTCCTCCGAGCCGGACTACATCGGTTCTTCCGCCGCGGATCAGCCTGTTCAGAATGCCGATCCAGAGCTCGACGGCGGACGACCGAAATCCAAATTCCTGCCAGGCTGCTTCACGGAGGAGAAGGCAAAACTGCTCCGGATGAAGACGCTGGAGAGCTCTACTTTCCATGACATTATGTATCATTCAGCAATAGCATCGCGCCTCGCCTCCGATTTGTCGGACCGAAGCAAGGAATAG

mRNA sequence

ATGGCGACCAATCTTCCCGTTTTCCATGCCGCTCCGATAAGGGCTTCGTCATCTGGAAAATCCGAACCAAATCGCCGGAAGGCTGCCGCGCCAAAGTGGTGGTCACCGATCTTCGGATGGTCCTCCGAGCCGGACTACATCGGTTCTTCCGCCGCGGATCAGCCTGTTCAGAATGCCGATCCAGAGCTCGACGGCGGACGACCGAAATCCAAATTCCTGCCAGGCTGCTTCACGGAGGAGAAGGCAAAACTGCTCCGGATGAAGACGCTGGAGAGCTCTACTTTCCATGACATTATGTATCATTCAGCAATAGCATCGCGCCTCGCCTCCGATTTGTCGGACCGAAGCAAGGAATAG

Coding sequence (CDS)

ATGGCGACCAATCTTCCCGTTTTCCATGCCGCTCCGATAAGGGCTTCGTCATCTGGAAAATCCGAACCAAATCGCCGGAAGGCTGCCGCGCCAAAGTGGTGGTCACCGATCTTCGGATGGTCCTCCGAGCCGGACTACATCGGTTCTTCCGCCGCGGATCAGCCTGTTCAGAATGCCGATCCAGAGCTCGACGGCGGACGACCGAAATCCAAATTCCTGCCAGGCTGCTTCACGGAGGAGAAGGCAAAACTGCTCCGGATGAAGACGCTGGAGAGCTCTACTTTCCATGACATTATGTATCATTCAGCAATAGCATCGCGCCTCGCCTCCGATTTGTCGGACCGAAGCAAGGAATAG

Protein sequence

MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE
Homology
BLAST of Csor.00g003750 vs. NCBI nr
Match: XP_022960101.1 (uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothetical protein SDJN03_12890, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025762.1 hypothetical protein SDJN02_12260, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241 bits (615), Expect = 2.56e-80
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60
           MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD
Sbjct: 1   MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60

Query: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118
           PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE
Sbjct: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of Csor.00g003750 vs. NCBI nr
Match: XP_023004861.1 (uncharacterized protein LOC111498038 [Cucurbita maxima])

HSP 1 Score: 236 bits (603), Expect = 1.74e-78
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0

Query: 1   MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60
           MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD
Sbjct: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60

Query: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118
           PELDGGR KSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE
Sbjct: 61  PELDGGRAKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of Csor.00g003750 vs. NCBI nr
Match: XP_023514525.1 (uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236 bits (601), Expect = 3.50e-78
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0

Query: 1   MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60
           MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQ VQNAD
Sbjct: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQNAD 60

Query: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118
           PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE
Sbjct: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of Csor.00g003750 vs. NCBI nr
Match: XP_038898524.1 (uncharacterized protein LOC120086132 [Benincasa hispida])

HSP 1 Score: 211 bits (537), Expect = 2.03e-68
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 0

Query: 1   MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60
           MATNL VFH APIRASSSGKSEPNRRKA APKWWSPIFGWSSEPDY+ SSAA+Q V NA+
Sbjct: 1   MATNLAVFHPAPIRASSSGKSEPNRRKATAPKWWSPIFGWSSEPDYVLSSAAEQSVLNAE 60

Query: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118
           PEL+GGR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 61  PELEGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 118

BLAST of Csor.00g003750 vs. NCBI nr
Match: XP_008461069.1 (PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo] >KAA0058783.1 uncharacterized protein E6C27_scaffold339G002570 [Cucumis melo var. makuwa] >TYK10577.1 uncharacterized protein E5676_scaffold459G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (506), Expect = 1.23e-63
Identity = 102/122 (83.61%), Postives = 107/122 (87.70%), Query Frame = 0

Query: 1   MATNLPVFHAAPIRASSS---GKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPV 60
           MATN  VFH  PIRASSS   GKS+PNRR AA PKWWSPIFGWSSEPDY+ SSAA+ Q V
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  QNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 118
           QNADPELDGGR  S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

BLAST of Csor.00g003750 vs. ExPASy TrEMBL
Match: A0A6J1H6P9 (uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC111460952 PE=4 SV=1)

HSP 1 Score: 241 bits (615), Expect = 1.24e-80
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query: 1   MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60
           MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD
Sbjct: 1   MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60

Query: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118
           PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE
Sbjct: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of Csor.00g003750 vs. ExPASy TrEMBL
Match: A0A6J1KTB2 (uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038 PE=4 SV=1)

HSP 1 Score: 236 bits (603), Expect = 8.40e-79
Identity = 116/118 (98.31%), Postives = 116/118 (98.31%), Query Frame = 0

Query: 1   MATNLPVFHAAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60
           MATNLPVFH APIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD
Sbjct: 1   MATNLPVFHVAPIRASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNAD 60

Query: 61  PELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118
           PELDGGR KSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE
Sbjct: 61  PELDGGRAKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of Csor.00g003750 vs. ExPASy TrEMBL
Match: A0A5D3CF29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002310 PE=4 SV=1)

HSP 1 Score: 199 bits (506), Expect = 5.96e-64
Identity = 102/122 (83.61%), Postives = 107/122 (87.70%), Query Frame = 0

Query: 1   MATNLPVFHAAPIRASSS---GKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPV 60
           MATN  VFH  PIRASSS   GKS+PNRR AA PKWWSPIFGWSSEPDY+ SSAA+ Q V
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  QNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 118
           QNADPELDGGR  S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

BLAST of Csor.00g003750 vs. ExPASy TrEMBL
Match: A0A1S3CEC0 (uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=4 SV=1)

HSP 1 Score: 199 bits (506), Expect = 5.96e-64
Identity = 102/122 (83.61%), Postives = 107/122 (87.70%), Query Frame = 0

Query: 1   MATNLPVFHAAPIRASSS---GKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPV 60
           MATN  VFH  PIRASSS   GKS+PNRR AA PKWWSPIFGWSSEPDY+ SSAA+ Q V
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  QNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 118
           QNADPELDGGR  S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

BLAST of Csor.00g003750 vs. ExPASy TrEMBL
Match: A0A0A0K8X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433380 PE=4 SV=1)

HSP 1 Score: 189 bits (480), Expect = 6.24e-60
Identity = 98/126 (77.78%), Postives = 105/126 (83.33%), Query Frame = 0

Query: 1   MATNLPVFHAAPIRASSS-------GKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD 60
           MATN  VFH API ASSS       GK +PNR  AAAPKWWSPIFGWSSEPDY+ SSAA+
Sbjct: 1   MATNFAVFHPAPITASSSSSSSSSSGKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAE 60

Query: 61  -QPVQNADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDL 118
            Q +QNADPEL GGR +S+F PGCFTEEKAKLLRMKT ESSTFHDIMYHSAIASRLASDL
Sbjct: 61  VQSIQNADPELHGGRIRSRFAPGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDL 120

BLAST of Csor.00g003750 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 104.0 bits (258), Expect = 8.5e-23
Identity = 54/107 (50.47%), Postives = 72/107 (67.29%), Query Frame = 0

Query: 13  IRASS-SGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQNADPELDGGRPKSK 72
           IRASS SG   P++ +  +  WW+P+FG  S+PDY+   ++   V     ++ G     K
Sbjct: 13  IRASSGSGSLNPDQNRKKSAAWWAPLFGLPSDPDYLNIESSCSTVNPDKTDISGS--GQK 72

Query: 73  FLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 119
           F  GCFTEEKAK LR KT E+STFHD+MYHSAIASRLASD++ R ++
Sbjct: 73  FRRGCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDITGRVED 117

BLAST of Csor.00g003750 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-21
Identity = 58/113 (51.33%), Postives = 75/113 (66.37%), Query Frame = 0

Query: 1   MATNLPVFHAAPIRASSSGKSEPNRRK-AAAPKWWSPIFGWSSEPDYIGSSAADQPVQNA 60
           MAT +     + IRASS  +S+P R+K  ++  WW+P+FG SSEPDY+  +       N 
Sbjct: 1   MATIISCSALSSIRASS--ESDPARKKPVSSVSWWAPLFGMSSEPDYVNKTV------NL 60

Query: 61  DPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDL 113
           + +LD    +S  L  C TEEKAK LR KT E+STFHD+MYHSAIASRLASD+
Sbjct: 61  ESDLDKAEKRS--LRCCLTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDV 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022960101.12.56e-80100.00uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothet... [more]
XP_023004861.11.74e-7898.31uncharacterized protein LOC111498038 [Cucurbita maxima][more]
XP_023514525.13.50e-7898.31uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo][more]
XP_038898524.12.03e-6887.29uncharacterized protein LOC120086132 [Benincasa hispida][more]
XP_008461069.11.23e-6383.61PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo] >KAA0058783.1 unc... [more]
Match NameE-valueIdentityDescription
A0A6J1H6P91.24e-80100.00uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC1114609... [more]
A0A6J1KTB28.40e-7998.31uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038... [more]
A0A5D3CF295.96e-6483.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CEC05.96e-6483.61uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=... [more]
A0A0A0K8X06.24e-6077.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433380 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G52720.18.5e-2350.47unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G15630.13.6e-2151.33unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..72
NoneNo IPR availablePANTHERPTHR34198:SF12BNAA05G35680D PROTEINcoord: 1..117
NoneNo IPR availablePANTHERPTHR34198OS01G0175100 PROTEINcoord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g003750.m01Csor.00g003750.m01mRNA