Csor.00g002590 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g002590
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	4F5 domain-containing protein
Location	Csor_Chr17: 9964834 .. 9965490 (-)
RNA-Seq Expression	Csor.00g002590
Synteny	Csor.00g002590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGATGATTTTAGGCAACGAAATAGGTTAGAGTTAATGGAGTTTATATATCGCGATTTTGTTGTAGATTTTGTGGTTTTATGTTTGTTTTGTCTTTAACTGAAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTTGACGCCTGAACAGCGACGCGAAAGGTTTCGTTCCTCTCTCTTAGTTATCAAAATTCGTCTTAAGTAACTTTTATGAGCTTGATTTTCAAAAATTGACAACAAAAATTAATTAGTTACCAAAAGAAGTCTAATTGGAACAGAATCTGTTTTGGAGTGAGAATTTGGGAAGTTGAAAGGATGGAGTTGTATTTGTGTTCAGGGATTCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGACGGAGGTAAAATTAAGTAACTGCAGATTCGATTTGGAGTAAATAGGAGAAGATTTATGGTAAAATCCATCCATCATGTGGATTCCTTTGCATTAGAACAAAGTTTGACTCTGCTTTTGAATGGTTATTTTTGTAGTTTTTGCTGGGCTTCAAATGCTTGTTCTCTCTGCAAACTTTTTCATATTTGAATGA

mRNA sequence

ATGATCGATGATTTTAGGCAACGAAATAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTTGACGCCTGAACAGCGACGCGAAAGGGATTCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGACGGAGTTTTTGCTGGGCTTCAAATGCTTGTTCTCTCTGCAAACTTTTTCATATTTGAATGA

Coding sequence (CDS)

ATGATCGATGATTTTAGGCAACGAAATAGCGAACGCGGAAACCAGAGAGATCGAGATCGAGAAAGGGCTCAAGCTAGGGCTGGAAGCAAGACCAAGCAACCGAGAAACGACGGCTTGACGCCTGAACAGCGACGCGAAAGGGATTCAAAAGCTCTTCAGGAGAAGACGGCGAGAAAAGCTGCAATGGCTGCCGGAGGAATCAACGCTGGCGACGGAGTTTTTGCTGGGCTTCAAATGCTTGTTCTCTCTGCAAACTTTTTCATATTTGAATGA

Protein sequence

MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGDGVFAGLQMLVLSANFFIFE

Homology

[Close]

BLAST of Csor.00g002590 vs. NCBI nr
Match: KAG6575984.1 (hypothetical protein SDJN03_26623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164 bits (414), Expect = 1.53e-50
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKA 60
          MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKA
Sbjct: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKA 60

Query: 61 AMAAGGINAGDGVFAGLQMLVLSANFFIFE 90
          AMAAGGINAGDGVFAGLQMLVLSANFFIFE
Sbjct: 61 AMAAGGINAGDGVFAGLQMLVLSANFFIFE 90

[Close]

BLAST of Csor.00g002590 vs. NCBI nr
Match: KAG7014508.1 (hypothetical protein SDJN02_24686, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131 bits (330), Expect = 6.62e-38
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKA 60
          MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKA
Sbjct: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKA 60

Query: 61 AMAAGGINAGDG 72
          AMAAGGINAGDG
Sbjct: 61 AMAAGGINAGDG 72

[Close]

BLAST of Csor.00g002590 vs. NCBI nr
Match: XP_022953785.1 (putative SERF-like protein [Cucurbita moschata])

HSP 1 Score: 127 bits (320), Expect = 2.22e-36
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKA 60
          MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERD+KALQEKTARKA
Sbjct: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDAKALQEKTARKA 60

Query: 61 AMAAGGINAGDG 72
          AMAAGGINAG G
Sbjct: 61 AMAAGGINAGGG 72

[Close]

BLAST of Csor.00g002590 vs. NCBI nr
Match: XP_023547529.1 (putative SERF-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 125 bits (314), Expect = 1.82e-35
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKA 60
          MIDDFRQR SERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERD+KALQEKTARKA
Sbjct: 1  MIDDFRQRTSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDAKALQEKTARKA 60

Query: 61 AMAAGGINAGDG 72
          AMAAGGINAG G
Sbjct: 61 AMAAGGINAGGG 72

[Close]

BLAST of Csor.00g002590 vs. NCBI nr
Match: XP_022991972.1 (putative SERF-like protein [Cucurbita maxima])

HSP 1 Score: 125 bits (314), Expect = 1.82e-35
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKA 60
          MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDG TPEQRRERD+KALQEKTARKA
Sbjct: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKA 60

Query: 61 AMAAGGINAGDG 72
          AMAAGGINAG G
Sbjct: 61 AMAAGGINAGGG 72

[Close]

BLAST of Csor.00g002590 vs. ExPASy TrEMBL
Match: A0A6J1GQM6 (putative SERF-like protein OS=Cucurbita moschata OX=3662 GN=LOC111456208 PE=3 SV=1)

HSP 1 Score: 127 bits (320), Expect = 1.07e-36
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0


Query: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKA 60
          MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERD+KALQEKTARKA
Sbjct: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDAKALQEKTARKA 60

Query: 61 AMAAGGINAGDG 72
          AMAAGGINAG G
Sbjct: 61 AMAAGGINAGGG 72

[Close]

BLAST of Csor.00g002590 vs. ExPASy TrEMBL
Match: A0A6J1JNE6 (putative SERF-like protein OS=Cucurbita maxima OX=3661 GN=LOC111488462 PE=3 SV=1)

HSP 1 Score: 125 bits (314), Expect = 8.83e-36
Identity = 69/72 (95.83%), Postives = 70/72 (97.22%), Query Frame = 0


Query: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKA 60
          MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDG TPEQRRERD+KALQEKTARKA
Sbjct: 1  MIDDFRQRNSERGNQRDRDRERAQARAGSKTKQPRNDGSTPEQRRERDAKALQEKTARKA 60

Query: 61 AMAAGGINAGDG 72
          AMAAGGINAG G
Sbjct: 61 AMAAGGINAGGG 72

[Close]

BLAST of Csor.00g002590 vs. ExPASy TrEMBL
Match: A0A151R150 (4F5 domain-containing protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_042653 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.28e-25
Identity = 54/63 (85.71%), Postives = 57/63 (90.48%), Query Frame = 0


Query: 10 SERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINA 69
          SERGNQRDRDRERAQARAG KTKQP+NDGLTPEQRRERD+KALQEK A+KAA  AGG NA
Sbjct: 1  SERGNQRDRDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKAAKKAAQGAGGNNA 60

Query: 70 GDG 72
          G G
Sbjct: 61 GGG 63

[Close]

BLAST of Csor.00g002590 vs. ExPASy TrEMBL
Match: K7MG85 (4F5 domain-containing protein OS=Glycine max OX=3847 GN=100818846 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.09e-25
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 10  SERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINA 69
           S+RGNQR+RDRERAQARAG KTKQP+NDGLTPEQRRERD+KALQEKTA+KAA AAGG NA
Sbjct: 48  SQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNA 107

Query: 70  GDG 72
           G G
Sbjct: 108 GGG 110

[Close]

BLAST of Csor.00g002590 vs. ExPASy TrEMBL
Match: A0A445GGC4 (4F5 domain-containing protein (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_043189 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.09e-25
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0


Query: 10  SERGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINA 69
           S+RGNQR+RDRERAQARAG KTKQP+NDGLTPEQRRERD+KALQEKTA+KAA AAGG NA
Sbjct: 48  SQRGNQRERDRERAQARAGGKTKQPKNDGLTPEQRRERDAKALQEKTAKKAAQAAGGNNA 107

Query: 70  GDG 72
           G G
Sbjct: 108 GGG 110

[Close]

BLAST of Csor.00g002590 vs. TAIR 10
Match: AT3G24100.1 (Uncharacterised protein family SERF )

HSP 1 Score: 70.9 bits (172), Expect = 6.1e-13
Identity = 42/61 (68.85%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 12 RGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAGD 71
          RG+QR+RDRERA AR G K K  ++DGLTPEQRRERD+KALQEKTA+KAA AA   ++G 
Sbjct: 3  RGSQRERDRERALARTGGKGKN-KDDGLTPEQRRERDAKALQEKTAKKAAQAAAAASSGG 62

Query: 72 G 73
          G
Sbjct: 63 G 62

[Close]

BLAST of Csor.00g002590 vs. TAIR 10
Match: AT4G13615.1 (Uncharacterised protein family SERF )

HSP 1 Score: 68.6 bits (166), Expect = 3.0e-12
Identity = 42/59 (71.19%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 12 RGNQRDRDRERAQARAGSKTKQPRNDGLTPEQRRERDSKALQEKTARKAAMAAGGINAG 71
          RG+QR+RDRERA ARAG K K   +DGLTPEQRRERD KALQEK A+KAA AAG  + G
Sbjct: 3  RGSQRERDRERAAARAGGKGKN-GDDGLTPEQRRERDGKALQEKAAKKAAQAAGASSGG 60

The following BLAST results are available for this feature:

BLAST of Csor.00g002590 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g002590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575984.1	1.53e-50	100.00	hypothetical protein SDJN03_26623, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014508.1	6.62e-38	100.00	hypothetical protein SDJN02_24686, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022953785.1	2.22e-36	97.22	putative SERF-like protein [Cucurbita moschata]	[more]
XP_023547529.1	1.82e-35	95.83	putative SERF-like protein [Cucurbita pepo subsp. pepo]	[more]
XP_022991972.1	1.82e-35	95.83	putative SERF-like protein [Cucurbita maxima]	[more]

BLAST of Csor.00g002590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GQM6	1.07e-36	97.22	putative SERF-like protein OS=Cucurbita moschata OX=3662 GN=LOC111456208 PE=3 SV...	[more]
A0A6J1JNE6	8.83e-36	95.83	putative SERF-like protein OS=Cucurbita maxima OX=3661 GN=LOC111488462 PE=3 SV=1	[more]
A0A151R150	2.28e-25	85.71	4F5 domain-containing protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_042653 ...	[more]
K7MG85	4.09e-25	85.71	4F5 domain-containing protein OS=Glycine max OX=3847 GN=100818846 PE=3 SV=1	[more]
A0A445GGC4	4.09e-25	85.71	4F5 domain-containing protein (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_043189...	[more]

BLAST of Csor.00g002590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24100.1	6.1e-13	68.85	Uncharacterised protein family SERF	[more]
AT4G13615.1	3.0e-12	71.19	Uncharacterised protein family SERF	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 12..45 e-value: 2.3E-9 score: 37.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..55
None	No IPR available	PANTHER	PTHR13596:SF11	SERF-LIKE PROTEIN-RELATED	coord: 12..70
IPR040211	Small EDRK-rich factor 1/2	PANTHER	PTHR13596	SMALL EDRK-RICH FACTOR 1	coord: 12..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g002590.m01	Csor.00g002590.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane