Csor.00g002170 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g002170
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X2
Location	Csor_Chr17: 10184720 .. 10186044 (-)
RNA-Seq Expression	Csor.00g002170
Synteny	Csor.00g002170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCGGAAGAGCCAGTTGTACTCTTGGAGCTGATGACATCCCAAGGGCCTACCACCGCACCCTAAACATGGACCGGTAACGTCATTCGATTCTTTCTTATTTCGTTCTGCTTGACTGTATTTGAATTTTCCCTATATTCCATGTCTAGTAGGTAGGTTCTGAGCTTAACGGCTCTGATGTATTTTGCATTTTTTTTTGGTTAAATATTTAGTTTTCGTCCATTGTTCAATGACTCCCCGGGCTCGGATTTGCCGATTGTTCGTCGAGATTATGAATCTGGTGGGGTCTGATTCCTAGTTTTACCGAGAAATCCGAGTAACCTAATTTCTTCAAGACGGTAATTTTCCCTCTTTTGTCTTGTGGCCTTTATCTGGTTTTCGTGTATAGTTTTATTGAAATGGCAGTTACTGTTTTTGTTACCTGTGGTCTGTAAGCATTTGTGTATGCAGGAGCTATTTCGTAGTTTTGTCTTGGTTTAAGTAATCCATGGCTTTTGCTTTCAAAAAATGGTAGTCAATCAATAGTTTTGTTTTCTTGCACAATGCAGGGGAGGCTTTCTTGAATTTGTTATTATTGTTTTTGCCGGTGAATTATTTACGCTCTTACCATTCTTACAACTTCATCATCTCCAGCTTTAGAGTGGTTACACGGTCAGTCTTATCTTTTCTTATTGGATTTGAATGTTGATGGGGACATGATGGAACTAAAAATTGTCAATCTCTGATTTGGTTGCAATAATTTTTATTTTATTATAGAAAAGATTAGTAGTGTATTGATGCCAAATTGTGCAACGGTGAAATTAATCTGAGGGGATGTTGGATTATAAGGAATTCCTACTAGCCTTGATAGAAAACAGAGGTTACAAGCTTGTCACATCTTATGAAGGGAAGAAGAATCTGGCAAGGAAATACTGGGAGCCGCATACTTGAAGATACATAATAGCTTTCATATGGATCCAATGGACATGAGCCTCTCTTGGTTTTTACCCTTTGGAAAATATGATTAGTAACTTCATTTTCTAAAACATCTGAAAACATTTTTATGTCTTCTTGTGTAGATAAGCTAAAGAATGATAGAAAAGTGAACACTCAAATTCCCCGTAACACATCTGTGAAACCTGAGCCATCGGAAAGTCCAGAAGAACACGAAAGAGATGTAAACCTTAGAGCTTCATCTGAAAAATCAAAGGATTGTCTTGCAAAGAGTTCTTCCGTGACTGTATCTCAAATAAAATGGGACCGTGAAGATATCTCATCTGAGTCAAAAAGTGGCATGGATGACTGTAGTAAGATTGGCATTAGTCCAAAGATAAGGAAAAAGTGA

mRNA sequence

ATGTGCGGAAGAGCCAGTTGTACTCTTGGAGCTGATGACATCCCAAGGGCCTACCACCGCACCCTAAACATGGACCGTTTTCGTCCATTGTTCAATGACTCCCCGGGCTCGGATTTGCCGATTGTTCGTCGAGATTATGAATCTGATAAGCTAAAGAATGATAGAAAAGTGAACACTCAAATTCCCCGTAACACATCTGTGAAACCTGAGCCATCGGAAAGTCCAGAAGAACACGAAAGAGATGTAAACCTTAGAGCTTCATCTGAAAAATCAAAGGATTGTCTTGCAAAGAGTTCTTCCGTGACTGTATCTCAAATAAAATGGGACCGTGAAGATATCTCATCTGAGTCAAAAAGTGGCATGGATGACTGTAGTAAGATTGGCATTAGTCCAAAGATAAGGAAAAAGTGA

Coding sequence (CDS)

ATGTGCGGAAGAGCCAGTTGTACTCTTGGAGCTGATGACATCCCAAGGGCCTACCACCGCACCCTAAACATGGACCGTTTTCGTCCATTGTTCAATGACTCCCCGGGCTCGGATTTGCCGATTGTTCGTCGAGATTATGAATCTGATAAGCTAAAGAATGATAGAAAAGTGAACACTCAAATTCCCCGTAACACATCTGTGAAACCTGAGCCATCGGAAAGTCCAGAAGAACACGAAAGAGATGTAAACCTTAGAGCTTCATCTGAAAAATCAAAGGATTGTCTTGCAAAGAGTTCTTCCGTGACTGTATCTCAAATAAAATGGGACCGTGAAGATATCTCATCTGAGTCAAAAAGTGGCATGGATGACTGTAGTAAGATTGGCATTAGTCCAAAGATAAGGAAAAAGTGA

Protein sequence

MCGRASCTLGADDIPRAYHRTLNMDRFRPLFNDSPGSDLPIVRRDYESDKLKNDRKVNTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKSSSVTVSQIKWDREDISSESKSGMDDCSKIGISPKIRKK

Homology

[Close]

BLAST of Csor.00g002170 vs. NCBI nr
Match: KAG6576026.1 (hypothetical protein SDJN03_26665, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 265 bits (678), Expect = 2.41e-89
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 0


Query: 1   MCGRASCTLGADDIPRAYHRTLNMDRFRPLFNDSPGSDLPIVRRDYESDKLKNDRKVNTQ 60
           MCGRASCTLGADDIPRAYHRTLNMDRFRPLFNDSPGSDLPIVRRDYESDKLKNDRKVNTQ
Sbjct: 1   MCGRASCTLGADDIPRAYHRTLNMDRFRPLFNDSPGSDLPIVRRDYESDKLKNDRKVNTQ 60

Query: 61  IPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKSSSVTVSQIKWDREDISSESKSG 120
           IPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKSSSVTVSQIKWDREDISSESKSG
Sbjct: 61  IPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKSSSVTVSQIKWDREDISSESKSG 120

Query: 121 MDDCSKIGISPKIRKK 136
           MDDCSKIGISPKIRKK
Sbjct: 121 MDDCSKIGISPKIRKK 136

[Close]

BLAST of Csor.00g002170 vs. NCBI nr
Match: KAG7014547.1 (hypothetical protein SDJN02_24725, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207 bits (526), Expect = 7.89e-66
Identity = 116/141 (82.27%), Postives = 120/141 (85.11%), Query Frame = 0


Query: 1   MCGRASCTLGADDIPRAYHRTLNMDRFRPL-----FNDSPGSDLPIVRRDYESDKLKNDR 60
           MCGRASCTLGADDIPRAYHRTLNMDRF  +          G  L  V   + +DKLKNDR
Sbjct: 1   MCGRASCTLGADDIPRAYHRTLNMDRFIEMAVTVFVTCGLGGFLEFVIIVF-ADKLKNDR 60

Query: 61  KVNTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKSSSVTVSQIKWDREDISS 120
           K+NTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLAK SSVTVSQIKWDREDISS
Sbjct: 61  KMNTQIPRNTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKRSSVTVSQIKWDREDISS 120

Query: 121 ESKSGMDDCSKIGISPKIRKK 136
           ESKSGMDDCSKIGISPKIRKK
Sbjct: 121 ESKSGMDDCSKIGISPKIRKK 140

[Close]

BLAST of Csor.00g002170 vs. NCBI nr
Match: XP_011659221.1 (uncharacterized protein LOC101206083 isoform X2 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.49e-17
Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 64  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKSSSVT--VSQIKWDREDISSESKSGM 123
           NTSVKPE S S EEH+R+VN  ASSE+SKDCLAK SS T    QIK DREDISS+ KSGM
Sbjct: 263 NTSVKPEASPSLEEHKREVNRGASSEESKDCLAKCSSDTSLTYQIKRDREDISSDLKSGM 322

Query: 124 DDCSKIGISPKIRKK 136
           DD SK+G SPKIRKK
Sbjct: 323 DDYSKVGSSPKIRKK 337

[Close]

BLAST of Csor.00g002170 vs. NCBI nr
Match: XP_011659220.1 (uncharacterized protein LOC101206083 isoform X1 [Cucumis sativus] >KGN44679.1 hypothetical protein Csa_015996 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.52e-17
Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 64  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKSSSVT--VSQIKWDREDISSESKSGM 123
           NTSVKPE S S EEH+R+VN  ASSE+SKDCLAK SS T    QIK DREDISS+ KSGM
Sbjct: 265 NTSVKPEASPSLEEHKREVNRGASSEESKDCLAKCSSDTSLTYQIKRDREDISSDLKSGM 324

Query: 124 DDCSKIGISPKIRKK 136
           DD SK+G SPKIRKK
Sbjct: 325 DDYSKVGSSPKIRKK 339

[Close]

BLAST of Csor.00g002170 vs. NCBI nr
Match: XP_038896830.1 (abasic site processing protein HMCES isoform X2 [Benincasa hispida])

HSP 1 Score: 87.4 bits (215), Expect = 2.86e-17
Identity = 55/75 (73.33%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 64  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKSSSVTVS--QIKWDREDISSESKSGM 123
           NT VKPE S S EEH+ DVNLRASSE+SKDCLAK SS T    QIK DREDISS SKSG+
Sbjct: 263 NTYVKPEASPSLEEHKTDVNLRASSEESKDCLAKCSSETAPTCQIKRDREDISSVSKSGV 322

Query: 124 DDCSKIGISPKIRKK 136
           DD SK+G SPK RKK
Sbjct: 323 DDYSKVGSSPKKRKK 337

[Close]

BLAST of Csor.00g002170 vs. ExPASy TrEMBL
Match: A0A0A0K6X8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G371760 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 7.34e-18
Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 64  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKSSSVT--VSQIKWDREDISSESKSGM 123
           NTSVKPE S S EEH+R+VN  ASSE+SKDCLAK SS T    QIK DREDISS+ KSGM
Sbjct: 265 NTSVKPEASPSLEEHKREVNRGASSEESKDCLAKCSSDTSLTYQIKRDREDISSDLKSGM 324

Query: 124 DDCSKIGISPKIRKK 136
           DD SK+G SPKIRKK
Sbjct: 325 DDYSKVGSSPKIRKK 339

[Close]

BLAST of Csor.00g002170 vs. ExPASy TrEMBL
Match: A0A5A7UR90 (Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9829G00070 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.15e-17
Identity = 54/75 (72.00%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 64  NTSVKPEPSESPEEHERDVNLRASSEKSKDCLAKSSSVT--VSQIKWDREDISSESKSGM 123
           NTSVKPE S S EEH+R+ NL ASSE+S+DCLAK SSVT    QIK DREDISS SKSG+
Sbjct: 314 NTSVKPEASPSLEEHKREANLGASSEESEDCLAKCSSVTSLTYQIKRDREDISSGSKSGV 373

Query: 124 DDCSKIGISPKIRKK 136
           DD SK G  PKIRKK
Sbjct: 374 DDYSKAGSRPKIRKK 388

[Close]

BLAST of Csor.00g002170 vs. ExPASy TrEMBL
Match: A0A6J1KPK2 (LOW QUALITY PROTEIN: uncharacterized protein LOC111497557 OS=Cucurbita maxima OX=3661 GN=LOC111497557 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.83e-16
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 1  MCGRASCTLGADDIPRAYHRT------LNMDRFRPLFNDSPGSDLPIVRRDYESD 49
          MCGRA CTL  DDI RA HRT      LNMDRFRPLFN SPGSDLP+VRRD ESD
Sbjct: 1  MCGRARCTLRTDDISRACHRTGGPIRSLNMDRFRPLFNASPGSDLPVVRRDDESD 55

[Close]

BLAST of Csor.00g002170 vs. ExPASy TrEMBL
Match: A0A6J1H9B1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111461258 OS=Cucurbita moschata OX=3662 GN=LOC111461258 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.83e-16
Identity = 41/55 (74.55%), Postives = 42/55 (76.36%), Query Frame = 0


Query: 1  MCGRASCTLGADDIPRAYHRT------LNMDRFRPLFNDSPGSDLPIVRRDYESD 49
          MCGRA CTL  DDI RA HRT      LNMDRFRPLFN SPGSDLP+VRRD ESD
Sbjct: 1  MCGRARCTLRTDDISRACHRTGGPIRSLNMDRFRPLFNASPGSDLPVVRRDDESD 55

[Close]

BLAST of Csor.00g002170 vs. ExPASy TrEMBL
Match: A0A1S3C774 (embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497636 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.33e-15
Identity = 41/54 (75.93%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 1  MCGRASCTLGADDIPRAYHRT------LNMDRFRPLFNDSPGSDLPIVRRDYES 48
          MCGRA CTL ADDI RA HRT      LNMDRFRPLFN SPGSDLP+VRRD ES
Sbjct: 1  MCGRARCTLRADDITRACHRTGGPVRSLNMDRFRPLFNASPGSDLPVVRRDDES 54

[Close]

BLAST of Csor.00g002170 vs. TAIR 10
Match: AT2G26470.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF159 (InterPro:IPR003738); Has 3646 Blast hits to 3636 proteins in 1001 species: Archae - 41; Bacteria - 1922; Metazoa - 142; Fungi - 125; Plants - 44; Viruses - 14; Other Eukaryotes - 1358 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 3.3e-10
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 1  MCGRASCTLGADDIPRAYH------RTLNMDRFRPLFNDSPGSDLPIVRRDYE 48
          MCGR  CTL  DD+PRA H      R L++DR+RP +N +PGS +P++RRD E
Sbjct: 1  MCGRTRCTLRPDDVPRASHRHTVPTRFLHLDRYRPSYNVAPGSYIPVLRRDNE 53

The following BLAST results are available for this feature:

BLAST of Csor.00g002170 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g002170 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6576026.1	2.41e-89	100.00	hypothetical protein SDJN03_26665, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014547.1	7.89e-66	82.27	hypothetical protein SDJN02_24725, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_011659221.1	1.49e-17	73.33	uncharacterized protein LOC101206083 isoform X2 [Cucumis sativus]	[more]
XP_011659220.1	1.52e-17	73.33	uncharacterized protein LOC101206083 isoform X1 [Cucumis sativus] >KGN44679.1 hy...	[more]
XP_038896830.1	2.86e-17	73.33	abasic site processing protein HMCES isoform X2 [Benincasa hispida]	[more]

BLAST of Csor.00g002170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6X8	7.34e-18	73.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G371760 PE=3 SV=1	[more]
A0A5A7UR90	7.15e-17	72.00	Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X2 ...	[more]
A0A6J1KPK2	9.83e-16	74.55	LOW QUALITY PROTEIN: uncharacterized protein LOC111497557 OS=Cucurbita maxima OX...	[more]
A0A6J1H9B1	9.83e-16	74.55	LOW QUALITY PROTEIN: uncharacterized protein LOC111461258 OS=Cucurbita moschata ...	[more]
A0A1S3C774	1.33e-15	75.93	embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X2 ...	[more]

BLAST of Csor.00g002170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26470.1	3.3e-10	52.83	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF159 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g002170.m01	Csor.00g002170.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0018142	protein-DNA covalent cross-linking
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003697	single-stranded DNA binding