CsaV3_UNG227960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_UNG227960
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionGlutamate--tRNA ligase
Locationscaffold114: 123274 .. 123628 (-)
RNA-Seq ExpressionCsaV3_UNG227960
SyntenyCsaV3_UNG227960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCCAAAATCATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTTTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

mRNA sequence

CCCAAAATCATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTTTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

Coding sequence (CDS)

CCCAAAATCATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTTTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

Protein sequence

PKIMDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR*
Homology
BLAST of CsaV3_UNG227960 vs. NCBI nr
Match: KAE8637311.1 (hypothetical protein CSA_023553, partial [Cucumis sativus])

HSP 1 Score: 227.3 bits (578), Expect = 7.1e-56
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0

Query: 1   PKIMDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAI 60
           PKIMDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAI
Sbjct: 1   PKIMDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAI 60

Query: 61  KTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           KTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  KTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 117

BLAST of CsaV3_UNG227960 vs. NCBI nr
Match: KAA0058525.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK07220.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.4 bits (529), Expect = 3.4e-50
Identity = 107/114 (93.86%), Postives = 108/114 (94.74%), Query Frame = 0

Query: 4   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 63
           MDSNY AY NQNSS RPLAI LALASAV LSPLRSYETSWSSGFVVPLVLLGLI+AIKTS
Sbjct: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60

Query: 64  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           S CSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

BLAST of CsaV3_UNG227960 vs. NCBI nr
Match: KAG6581812.1 (hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.9 bits (450), Expect = 5.0e-41
Identity = 98/119 (82.35%), Postives = 103/119 (86.55%), Query Frame = 0

Query: 4   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 63
           MDSNY AY NQ SSQRPLAI LALASAVVLSPLR YE+ WSSGFV+PLVLL LI+AIKTS
Sbjct: 1   MDSNYGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60

Query: 64  SSCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           SSCSS S     RDSAIL SD PSWVLKIGSSSWGLAG+LMMLI GLSWQSSV+EFLWR
Sbjct: 61  SSCSSMSTDRRERDSAILSSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118

BLAST of CsaV3_UNG227960 vs. NCBI nr
Match: KAF7814039.1 (hypothetical protein G2W53_028008 [Senna tora])

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-30
Identity = 77/121 (63.64%), Postives = 95/121 (78.51%), Query Frame = 0

Query: 8   YSAYANQNSSQRPLAIFLALASAVVLSPL-----------RSYETSWSSGFVVPLVLLGL 67
           Y+AY++Q SSQR LA+ LALASAVVLSPL           R YE+ WS GFV+P++L GL
Sbjct: 8   YAAYSSQGSSQRSLAMVLALASAVVLSPLYNVKPKSEGIGRYYESKWSFGFVLPMLLAGL 67

Query: 68  IVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLW 118
           I+AI+TSSS SST R +++LPS  PSWVL+IGSSSWGLAG+L+ML+L L WQ+SVQEF W
Sbjct: 68  IIAIRTSSSSSSTPR-ASLLPSPEPSWVLRIGSSSWGLAGVLLMLMLVLHWQASVQEFFW 127

BLAST of CsaV3_UNG227960 vs. NCBI nr
Match: XP_030969466.1 (uncharacterized protein LOC115989757 [Quercus lobata])

HSP 1 Score: 142.5 bits (358), Expect = 2.3e-30
Identity = 77/118 (65.25%), Postives = 91/118 (77.12%), Query Frame = 0

Query: 11  YANQNSSQRPLAIFLALASAVVLSPL--------RSYETSWSSGFVVPLVLLGLIVAIKT 70
           Y +Q SSQR +A+ LAL SA+VLSPL        R YET WSSGFV+P+VL GLI+AIKT
Sbjct: 6   YTSQYSSQRSVAMVLALVSAIVLSPLYVTRKNDTRYYETKWSSGFVLPMVLAGLIIAIKT 65

Query: 71  SSSCSSTSRD---SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           +SSCSS S     ++I+PS  PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 66  TSSCSSMSAQGGRASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQESVQEFFWR 123

BLAST of CsaV3_UNG227960 vs. ExPASy TrEMBL
Match: A0A0A0LEN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.5e-54
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0

Query: 4   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 63
           MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS
Sbjct: 1   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60

Query: 64  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

BLAST of CsaV3_UNG227960 vs. ExPASy TrEMBL
Match: A0A5A7UY99 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001090 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-50
Identity = 107/114 (93.86%), Postives = 108/114 (94.74%), Query Frame = 0

Query: 4   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 63
           MDSNY AY NQNSS RPLAI LALASAV LSPLRSYETSWSSGFVVPLVLLGLI+AIKTS
Sbjct: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60

Query: 64  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           S CSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

BLAST of CsaV3_UNG227960 vs. ExPASy TrEMBL
Match: A0A7N2LMQ6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 77/118 (65.25%), Postives = 91/118 (77.12%), Query Frame = 0

Query: 11  YANQNSSQRPLAIFLALASAVVLSPL--------RSYETSWSSGFVVPLVLLGLIVAIKT 70
           Y +Q SSQR +A+ LAL SA+VLSPL        R YET WSSGFV+P+VL GLI+AIKT
Sbjct: 6   YTSQYSSQRSVAMVLALVSAIVLSPLYVTRKNDTRYYETKWSSGFVLPMVLAGLIIAIKT 65

Query: 71  SSSCSSTSRD---SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           +SSCSS S     ++I+PS  PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 66  TSSCSSMSAQGGRASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQESVQEFFWR 123

BLAST of CsaV3_UNG227960 vs. ExPASy TrEMBL
Match: A0A067KX22 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24696 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 5.6e-30
Identity = 76/119 (63.87%), Postives = 92/119 (77.31%), Query Frame = 0

Query: 8   YSAYANQNSSQRPLAIFLALASAVVLSP---------LRSYETSWSSGFVVPLVLLGLIV 67
           Y+ Y++QNSSQR LA+ LAL SAVVLSP         LR YET WSSGFV+P+VL GLI+
Sbjct: 4   YNNYSSQNSSQRGLALVLALVSAVVLSPLYVNRKTDSLRFYETKWSSGFVLPMVLGGLII 63

Query: 68  AIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           AI+T+S+ SS  R  +++P   PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 64  AIRTTST-SSVQRRESLIPCPDPSWVLRIGSSSWGLAGILVMLMLVLSWQESVQEFFWR 121

BLAST of CsaV3_UNG227960 vs. ExPASy TrEMBL
Match: A0A2N9IBH6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49527 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.2e-29
Identity = 74/119 (62.18%), Postives = 92/119 (77.31%), Query Frame = 0

Query: 11  YANQNSSQRPLAIFLALASAVVLSPLRS--------YETSWSSGFVVPLVLLGLIVAIKT 70
           Y  Q SSQR +A+ L+L SA+VLSPL +        YET WSSGFV+P+VL+GLI+AI+T
Sbjct: 6   YTGQYSSQRSVAMVLSLVSAIVLSPLYARRKNDTSYYETKWSSGFVLPMVLVGLIIAIRT 65

Query: 71  SSSCSSTSRD----SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 118
           +SSCSS S      ++I+PS  PSWVL+IGSSSWGLAGIL+ML+L LSWQ+SVQEF WR
Sbjct: 66  TSSCSSMSAQGGARASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQASVQEFFWR 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8637311.17.1e-56100.00hypothetical protein CSA_023553, partial [Cucumis sativus][more]
KAA0058525.13.4e-5093.86putative transmembrane protein [Cucumis melo var. makuwa] >TYK07220.1 putative t... [more]
KAG6581812.15.0e-4182.35hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF7814039.11.8e-3063.64hypothetical protein G2W53_028008 [Senna tora][more]
XP_030969466.12.3e-3065.25uncharacterized protein LOC115989757 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LEN32.5e-54100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1[more]
A0A5A7UY991.7e-5093.86Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A7N2LMQ61.1e-3065.25Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A067KX225.6e-3063.87Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24696 PE=4 SV=1[more]
A0A2N9IBH61.2e-2962.18Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49527 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35758TRANSMEMBRANE PROTEINcoord: 4..117
NoneNo IPR availablePANTHERPTHR35758:SF1SERINE RICH PROTEINcoord: 4..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_UNG227960.1CsaV3_UNG227960.1mRNA