CsaV3_UNG208970 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_UNG208970
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic
Location	scaffold18_1: 826819 .. 826980 (+)
RNA-Seq Expression	CsaV3_UNG208970
Synteny	CsaV3_UNG208970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTGGCATGTACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCCTAATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAA

mRNA sequence

ATGATCTGGCATGTACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCCTAATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAA

Coding sequence (CDS)

ATGATCTGGCATGTACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCCTAATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAA

Protein sequence

MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ

Homology

[Close]

BLAST of CsaV3_UNG208970 vs. NCBI nr
Match: ARC97547.1 (NADH-plastoquinone oxidoreductase subunit 2 [Osteomeles anthyllidifolia])

HSP 1 Score: 109.4 bits (272), Expect = 9.9e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. NCBI nr
Match: AQV10571.1 (NADH dehydrogenase subunit 2 [Camelina sativa] >AQV10580.1 NADH dehydrogenase subunit 2 [Camelina sativa])

HSP 1 Score: 109.4 bits (272), Expect = 9.9e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. NCBI nr
Match: YP_009419449.1 (NADH-plastoquinone oxidoreductase subunit 2 [Ternstroemia gymnanthera] >YP_009419464.1 NADH-plastoquinone oxidoreductase subunit 2 [Ternstroemia gymnanthera] >ADZ36367.1 NADH-plastoquinone oxidoreductase subunit 2 [Ternstroemia gymnanthera] >ASM45799.1 NADH-plastoquinone oxidoreductase subunit 2 [Ternstroemia gymnanthera] >ASM45800.1 NADH-plastoquinone oxidoreductase subunit 2 [Ternstroemia gymnanthera])

HSP 1 Score: 109.4 bits (272), Expect = 9.9e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. NCBI nr
Match: YP_010142386.1 (NADH-plastoquinone oxidoreductase subunit 2 [Persicaria japonica] >YP_010142402.1 NADH-plastoquinone oxidoreductase subunit 2 [Persicaria japonica] >QQK93019.1 NADH-plastoquinone oxidoreductase subunit 2 [Persicaria japonica] >QQK93020.1 NADH-plastoquinone oxidoreductase subunit 2 [Persicaria japonica])

HSP 1 Score: 109.4 bits (272), Expect = 9.9e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. NCBI nr
Match: QXP99855.1 (NADH dehydrogenase subunit 2 [Fallopia aubertii] >QXP99871.1 NADH dehydrogenase subunit 2 [Fallopia aubertii])

HSP 1 Score: 109.4 bits (272), Expect = 9.9e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. ExPASy Swiss-Prot
Match: P0CC20 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Acorus americanus OX=263995 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. ExPASy Swiss-Prot
Match: P0CC21 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Acorus calamus OX=4465 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. ExPASy Swiss-Prot
Match: P0CC46 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Citrus sinensis OX=2711 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. ExPASy Swiss-Prot
Match: P0CC50 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. ExPASy Swiss-Prot
Match: P0CC64 (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Gossypium barbadense OX=3634 GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.3e-23
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. ExPASy TrEMBL
Match: A0A7H1A7K0 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Solms-laubachia baiogoinensis OX=375369 GN=ndhB PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.8e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. ExPASy TrEMBL
Match: A0A7H9SKS1 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Camellia fraterna OX=542725 GN=ndhB PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.8e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. ExPASy TrEMBL
Match: A0A7G8QE82 (NADH-quinone oxidoreductase subunit N OS=Balanops balansae OX=544656 GN=ndhB PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.8e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. ExPASy TrEMBL
Match: A0A7H1A731 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Sisymbriopsis schugnana OX=2259848 GN=ndhB PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.8e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

[Close]

BLAST of CsaV3_UNG208970 vs. ExPASy TrEMBL
Match: A0A649Z9L0 (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Amelanchier cusickii OX=52524 GN=ndhB PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.8e-21
Identity = 54/54 (100.00%), Postives = 54/54 (100.00%), Query Frame = 0


Query: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 55
          MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ
Sbjct: 1  MIWHVQNENFILDSTRIFMKAFHLLLFDGSFIFPECILIFGLILLLMIDSTSDQ 54

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG208970 vs. NCBI nr


Match Name	E-value	Identity	Description
ARC97547.1	9.9e-21	100.00	NADH-plastoquinone oxidoreductase subunit 2 [Osteomeles anthyllidifolia]	[more]
AQV10571.1	9.9e-21	100.00	NADH dehydrogenase subunit 2 [Camelina sativa] >AQV10580.1 NADH dehydrogenase su...	[more]
YP_009419449.1	9.9e-21	100.00	NADH-plastoquinone oxidoreductase subunit 2 [Ternstroemia gymnanthera] >YP_00941...	[more]
YP_010142386.1	9.9e-21	100.00	NADH-plastoquinone oxidoreductase subunit 2 [Persicaria japonica] >YP_010142402....	[more]
QXP99855.1	9.9e-21	100.00	NADH dehydrogenase subunit 2 [Fallopia aubertii] >QXP99871.1 NADH dehydrogenase ...	[more]

BLAST of CsaV3_UNG208970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CC20	1.3e-23	100.00	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Acorus americanus O...	[more]
P0CC21	1.3e-23	100.00	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Acorus calamus OX=4...	[more]
P0CC46	1.3e-23	100.00	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Citrus sinensis OX=...	[more]
P0CC50	1.3e-23	100.00	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Cucumis sativus OX=...	[more]
P0CC64	1.3e-23	100.00	NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Gossypium barbadens...	[more]

BLAST of CsaV3_UNG208970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7H1A7K0	4.8e-21	100.00	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Solms-laubachia baiog...	[more]
A0A7H9SKS1	4.8e-21	100.00	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Camellia fraterna OX=...	[more]
A0A7G8QE82	4.8e-21	100.00	NADH-quinone oxidoreductase subunit N OS=Balanops balansae OX=544656 GN=ndhB PE=...	[more]
A0A7H1A731	4.8e-21	100.00	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Sisymbriopsis schugna...	[more]
A0A649Z9L0	4.8e-21	100.00	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Amelanchier cusickii ...	[more]

BLAST of CsaV3_UNG208970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45564:SF5	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 2 B, CHLOROPLASTIC	coord: 1..54
None	No IPR available	PANTHER	PTHR45564	FAMILY NOT NAMED	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG208970.1	CsaV3_UNG208970.1	mRNA