CsaV3_UNG208790 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_UNG208790
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionGemini_AL1 domain-containing protein
Locationscaffold18_1: 783334 .. 783624 (+)
RNA-Seq ExpressionCsaV3_UNG208790
SyntenyCsaV3_UNG208790
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTCATTGGATAGCCACCAATGACGTCTTCCAGCGGCCCATAAGGAGAAGACAGCTCTTTGTCTACGGCCCGCCAAGTACACAGAAAATACTTCAGATAAGTATGTTAAAAAGGGGTGGCTTAAGGGTGGGCCAAAGGAAAAATGACTATTCTGGCGCGCATGATTACTTTGACCTATGGGTTATCGACGAGTTCATGGAGGACAAGCCCCAGTCCCAATTCGAATCGGAACAGCGGGGAAGCTATATTCATGCGGTACTCACCCTACTGGGCAGGAGTGCAGGCTAG

mRNA sequence

ATGCGTCATTGGATAGCCACCAATGACGTCTTCCAGCGGCCCATAAGGAGAAGACAGCTCTTTGTCTACGGCCCGCCAAGTACACAGAAAATACTTCAGATAAGTATGTTAAAAAGGGGTGGCTTAAGGGTGGGCCAAAGGAAAAATGACTATTCTGGCGCGCATGATTACTTTGACCTATGGGTTATCGACGAGTTCATGGAGGACAAGCCCCAGTCCCAATTCGAATCGGAACAGCGGGGAAGCTATATTCATGCGGTACTCACCCTACTGGGCAGGAGTGCAGGCTAG

Coding sequence (CDS)

ATGCGTCATTGGATAGCCACCAATGACGTCTTCCAGCGGCCCATAAGGAGAAGACAGCTCTTTGTCTACGGCCCGCCAAGTACACAGAAAATACTTCAGATAAGTATGTTAAAAAGGGGTGGCTTAAGGGTGGGCCAAAGGAAAAATGACTATTCTGGCGCGCATGATTACTTTGACCTATGGGTTATCGACGAGTTCATGGAGGACAAGCCCCAGTCCCAATTCGAATCGGAACAGCGGGGAAGCTATATTCATGCGGTACTCACCCTACTGGGCAGGAGTGCAGGCTAG

Protein sequence

MRHWIATNDVFQRPIRRRQLFVYGPPSTQKILQISMLKRGGLRVGQRKNDYSGAHDYFDLWVIDEFMEDKPQSQFESEQRGSYIHAVLTLLGRSAG*
Homology
[Close]
BLAST of CsaV3_UNG208790 vs. NCBI nr
Match: KAA0036653.1 (hypothetical protein E6C27_scaffold43953G00030 [Cucumis melo var. makuwa] >TYK22294.1 hypothetical protein E5676_scaffold76112G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 53/91 (58.24%), Postives = 69/91 (75.82%), Query Frame = 0 

Query: 4   WIATNDVFQRPIRRRQLFVYGPPSTQKILQISMLKRGGLR---VGQRKNDYSGAHDYFDL 63
           WIA N +F+R ++ RQLFVYG P+ QK L IS+LKR GLR   VG RKND+SGA+D+FDL
Sbjct: 31  WIAVNLLFERRLKTRQLFVYGKPNAQKSLLISLLKRAGLRIYSVGHRKNDFSGANDFFDL 90

Query: 64  WVIDEFMEDKPQSQFESEQRGSYIHAVLTLL 92
           WVIDEF+++   +++ESEQ G     +LTLL
Sbjct: 91  WVIDEFIDE--SNKYESEQ-GINPKTLLTLL 118

[Close]
BLAST of CsaV3_UNG208790 vs. NCBI nr
Match: KAA0036880.1 (hypothetical protein E6C27_scaffold47006G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 9.2e-17
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 0 

Query: 4   WIATNDVFQRPIRRRQLFVYGPPSTQKILQISMLKRGGLR---VGQRKNDYSGAHDYFDL 63
           WIA N VF+R ++ RQLF+YG P+ QK L IS+LK  GLR   VG RKND+SGA+D++D+
Sbjct: 191 WIAVNLVFERRLKTRQLFIYGRPNAQKSLFISLLKEAGLRIYSVGHRKNDFSGANDFYDI 250

Query: 64  WVIDEFMEDKPQSQFESEQRGSYIHAVLTLL 92
           W IDEF +D    ++ESEQ G   + +L LL
Sbjct: 251 WAIDEFTDD--SEKYESEQ-GRNPNTLLVLL 278

[Close]
BLAST of CsaV3_UNG208790 vs. NCBI nr
Match: TYK27131.1 (hypothetical protein E5676_scaffold78976G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 9.2e-17
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 0 

Query: 4   WIATNDVFQRPIRRRQLFVYGPPSTQKILQISMLKRGGLR---VGQRKNDYSGAHDYFDL 63
           WIA N VF+R ++ RQLF+YG P+ QK L IS+LK  GLR   VG RKND+SGA+D++D+
Sbjct: 31  WIAVNLVFERRLKTRQLFIYGRPNAQKSLFISLLKEAGLRIYSVGHRKNDFSGANDFYDI 90

Query: 64  WVIDEFMEDKPQSQFESEQRGSYIHAVLTLL 92
           W IDEF +D    ++ESEQ G   + +L LL
Sbjct: 91  WAIDEFTDD--SEKYESEQ-GRNPNTLLVLL 118

[Close]
BLAST of CsaV3_UNG208790 vs. NCBI nr
Match: TYK22406.1 (hypothetical protein E5676_scaffold78038G00030 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 6.6e-15
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 0 

Query: 4   WIATNDVF--QRPIRRRQLFVYGPPSTQKILQISMLKRGGLRV---GQRKNDYSGAHDYF 63
           W+A N V   +RPI+ RQLFVYG PSTQK L I ML++  L+V   G RK DYSGA D+ 
Sbjct: 161 WLAVNRVVGSKRPIKTRQLFVYGEPSTQKTLLICMLQQ-ALKVYTTGSRKTDYSGADDFH 220

Query: 64  DLWVIDEFMEDKPQSQFESEQRGSYIHAVLTLL 92
           DLWV+DEF +   +     E+ G+Y++ +L LL
Sbjct: 221 DLWVLDEFQDHSAEKTLYEEKPGAYLNHLLQLL 252

[Close]
BLAST of CsaV3_UNG208790 vs. NCBI nr
Match: KAA0046627.1 (hypothetical protein E6C27_scaffold45744G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 3.3e-14
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 4   WIATNDVFQRPIRRRQLFVYGPPSTQKILQISMLKRGGLRV---GQRKNDYSGAHDYFDL 63
           W+A N V  RP++ ++LF+YG  STQK L I +L +  LR+   G RKNDYSGA+ Y  L
Sbjct: 204 WLAVNLVSDRPLKTKELFLYGEKSTQKTLLIKILGK-VLRIYSTGHRKNDYSGANHYSSL 263

Query: 64  WVIDEFMEDKPQ-SQFESEQRGSYIHAVLTL 91
           W IDEF E     S F  E+ G YIH +LTL
Sbjct: 264 WTIDEFREKTDSASSFHQEEEGEYIHRLLTL 293

[Close]
BLAST of CsaV3_UNG208790 vs. ExPASy TrEMBL
Match: A0A5D3DFC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76112G00020 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.1e-19
Identity = 53/91 (58.24%), Postives = 69/91 (75.82%), Query Frame = 0 

Query: 4   WIATNDVFQRPIRRRQLFVYGPPSTQKILQISMLKRGGLR---VGQRKNDYSGAHDYFDL 63
           WIA N +F+R ++ RQLFVYG P+ QK L IS+LKR GLR   VG RKND+SGA+D+FDL
Sbjct: 31  WIAVNLLFERRLKTRQLFVYGKPNAQKSLLISLLKRAGLRIYSVGHRKNDFSGANDFFDL 90

Query: 64  WVIDEFMEDKPQSQFESEQRGSYIHAVLTLL 92
           WVIDEF+++   +++ESEQ G     +LTLL
Sbjct: 91  WVIDEFIDE--SNKYESEQ-GINPKTLLTLL 118

[Close]
BLAST of CsaV3_UNG208790 vs. ExPASy TrEMBL
Match: A0A5A7T0J6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold47006G00040 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.4e-17
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 0 

Query: 4   WIATNDVFQRPIRRRQLFVYGPPSTQKILQISMLKRGGLR---VGQRKNDYSGAHDYFDL 63
           WIA N VF+R ++ RQLF+YG P+ QK L IS+LK  GLR   VG RKND+SGA+D++D+
Sbjct: 191 WIAVNLVFERRLKTRQLFIYGRPNAQKSLFISLLKEAGLRIYSVGHRKNDFSGANDFYDI 250

Query: 64  WVIDEFMEDKPQSQFESEQRGSYIHAVLTLL 92
           W IDEF +D    ++ESEQ G   + +L LL
Sbjct: 251 WAIDEFTDD--SEKYESEQ-GRNPNTLLVLL 278

[Close]
BLAST of CsaV3_UNG208790 vs. ExPASy TrEMBL
Match: A0A5D3DTX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78976G00010 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.4e-17
Identity = 49/91 (53.85%), Postives = 65/91 (71.43%), Query Frame = 0 

Query: 4   WIATNDVFQRPIRRRQLFVYGPPSTQKILQISMLKRGGLR---VGQRKNDYSGAHDYFDL 63
           WIA N VF+R ++ RQLF+YG P+ QK L IS+LK  GLR   VG RKND+SGA+D++D+
Sbjct: 31  WIAVNLVFERRLKTRQLFIYGRPNAQKSLFISLLKEAGLRIYSVGHRKNDFSGANDFYDI 90

Query: 64  WVIDEFMEDKPQSQFESEQRGSYIHAVLTLL 92
           W IDEF +D    ++ESEQ G   + +L LL
Sbjct: 91  WAIDEFTDD--SEKYESEQ-GRNPNTLLVLL 118

[Close]
BLAST of CsaV3_UNG208790 vs. ExPASy TrEMBL
Match: A0A5D3DFN6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78038G00030 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.2e-15
Identity = 47/93 (50.54%), Postives = 62/93 (66.67%), Query Frame = 0 

Query: 4   WIATNDVF--QRPIRRRQLFVYGPPSTQKILQISMLKRGGLRV---GQRKNDYSGAHDYF 63
           W+A N V   +RPI+ RQLFVYG PSTQK L I ML++  L+V   G RK DYSGA D+ 
Sbjct: 161 WLAVNRVVGSKRPIKTRQLFVYGEPSTQKTLLICMLQQ-ALKVYTTGSRKTDYSGADDFH 220

Query: 64  DLWVIDEFMEDKPQSQFESEQRGSYIHAVLTLL 92
           DLWV+DEF +   +     E+ G+Y++ +L LL
Sbjct: 221 DLWVLDEFQDHSAEKTLYEEKPGAYLNHLLQLL 252

[Close]
BLAST of CsaV3_UNG208790 vs. ExPASy TrEMBL
Match: A0A5A7TXG7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold45744G00010 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.6e-14
Identity = 46/91 (50.55%), Postives = 58/91 (63.74%), Query Frame = 0 

Query: 4   WIATNDVFQRPIRRRQLFVYGPPSTQKILQISMLKRGGLRV---GQRKNDYSGAHDYFDL 63
           W+A N V  RP++ ++LF+YG  STQK L I +L +  LR+   G RKNDYSGA+ Y  L
Sbjct: 204 WLAVNLVSDRPLKTKELFLYGEKSTQKTLLIKILGK-VLRIYSTGHRKNDYSGANHYSSL 263

Query: 64  WVIDEFMEDKPQ-SQFESEQRGSYIHAVLTL 91
           W IDEF E     S F  E+ G YIH +LTL
Sbjct: 264 WTIDEFREKTDSASSFHQEEEGEYIHRLLTL 293

The following BLAST results are available for this feature:
BLAST of CsaV3_UNG208790 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036653.11.7e-1858.24hypothetical protein E6C27_scaffold43953G00030 [Cucumis melo var. makuwa] >TYK22... [more]
KAA0036880.19.2e-1753.85hypothetical protein E6C27_scaffold47006G00040 [Cucumis melo var. makuwa][more]
TYK27131.19.2e-1753.85hypothetical protein E5676_scaffold78976G00010 [Cucumis melo var. makuwa][more]
TYK22406.16.6e-1550.54hypothetical protein E5676_scaffold78038G00030 [Cucumis melo var. makuwa][more]
KAA0046627.13.3e-1450.55hypothetical protein E6C27_scaffold45744G00010 [Cucumis melo var. makuwa][more]
BLAST of CsaV3_UNG208790 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_UNG208790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DFC68.1e-1958.24Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7T0J64.4e-1753.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DTX04.4e-1753.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DFN63.2e-1550.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TXG71.6e-1450.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CsaV3_UNG208790 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_UNG208790.1CsaV3_UNG208790.1mRNA