CsaV3_UNG208670 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_UNG208670
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	NADH-ubiquinone oxidoreductase chain 6
Location	scaffold18_1: 741960 .. 742477 (+)
RNA-Seq Expression	CsaV3_UNG208670
Synteny	CsaV3_UNG208670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATACTTTCCGTTTTGTCGAGCCCAGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCTGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATCTTCTTCATTTTGGATAATGAAAGCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACGGTTTATGCCGGAAAGGTACGAAGTTGGACTAATTTGGAAACATTGGGCAATTTACTTTATACCTACTATTCCGTCTGGTTTTTGCTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAG

mRNA sequence

ATGATACTTTCCGTTTTGTCGAGCCCAGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCTGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATCTTCTTCATTTTGGATAATGAAAGCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACGGTTTATGCCGGAAAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAG

Coding sequence (CDS)

ATGATACTTTCCGTTTTGTCGAGCCCAGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGCAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATGTTCCATATTCAAATAGCGGAGATTCACGAAGAAGTCTTGCGCTATTTACCTGTGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATCTTCTTCATTTTGGATAATGAAAGCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACGGTTTATGCCGGAAAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAG

Protein sequence

MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSLRYTVYAGKSDFISSHDWGYSTDYA*

Homology

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BLAST of CsaV3_UNG208670 vs. NCBI nr
Match: AEN56128.1 (hypothetical protein [Cucumis melo subsp. melo] >AZP40285.1 NADH dehydrogenase subunit 6 [Cucumis melo var. momordica])

HSP 1 Score: 248.1 bits (632), Expect = 4.9e-62
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. NCBI nr
Match: YP_004849335.1 (NADH dehydrogenase subunit 6 [Cucumis sativus] >ADZ10762.1 NADH dehydrogenase subunit 6 [Cucumis sativus])

HSP 1 Score: 248.1 bits (632), Expect = 4.9e-62
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. NCBI nr
Match: AUD57051.1 (NADH dehydrogenase subunit 6 [Cephalanthus occidentalis] >AUD57053.1 NADH dehydrogenase subunit 6 [Deppea grandiflora])

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. NCBI nr
Match: QYB18028.1 (NADH dehydrogenase subunit 6 [Damnacanthus indicus var. indicus] >QYB18156.1 NADH dehydrogenase subunit 6 [Damnacanthus indicus var. microphyllus] >QYB18060.1 NADH dehydrogenase subunit 6 [Damnacanthus indicus var. indicus] >QYB18092.1 NADH dehydrogenase subunit 6 [Damnacanthus indicus var. indicus] >QYB18124.1 NADH dehydrogenase subunit 6 [Damnacanthus indicus var. indicus])

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. NCBI nr
Match: AUD57052.1 (NADH dehydrogenase subunit 6 [Cubanola domingensis] >AUD57054.1 NADH dehydrogenase subunit 6 [Guettarda scabra] >AUD57055.1 NADH dehydrogenase subunit 6 [Hillia triflora] >AUD57056.1 NADH dehydrogenase subunit 6 [Hymenodictyon parvifolium] >AUD57057.1 NADH dehydrogenase subunit 6 [Rondeletia odorata] >QOS02862.1 NADH dehydrogenase subunit 6 [Neolamarckia cadamba])

HSP 1 Score: 246.9 bits (629), Expect = 1.1e-61
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. ExPASy Swiss-Prot
Match: P60498 (NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.6e-63
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMV RAKNPVHSVLFPIPVFR+TSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. ExPASy Swiss-Prot
Match: Q02500 (NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.4e-58
Identity = 120/130 (92.31%), Postives = 125/130 (96.15%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPI VF +TSGLL+LLGLDF AMI PVVHIGA
Sbjct: 19  MILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSAMISPVVHIGA 78

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMF+IQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNE+IPLLPT RNTT
Sbjct: 79  IAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTHRNTT 138

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 139 SLRYTVYAGK 148

[Close]

BLAST of CsaV3_UNG208670 vs. ExPASy Swiss-Prot
Match: P60497 (NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE=1 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.4e-57
Identity = 121/130 (93.08%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSS ALVSGLMVVRAKNPVHSVLF I VF +TSGLLLLLGLDFFAMIF VV+IGA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAV FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. ExPASy Swiss-Prot
Match: P26850 (NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 PE=2 SV=2)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-41
Identity = 94/130 (72.31%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 10  ALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVSFLFVV 69
           ALVSG MV+RAKNPVHSVLF I VF NTSGLL+LLGLDFFAMIF VV++GAIAV FLFVV
Sbjct: 11  ALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGAIAVLFLFVV 70

Query: 70  MMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSLRYTVYAG 129
           MM HI+I EIHE VLRYLPV GIIGLIF  EIF ++DN+ IP+LPT+ + T L YTVYAG
Sbjct: 71  MMLHIRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILPTKLSATYLTYTVYAG 130

Query: 130 KSDFISSHDW 140
           K      H W
Sbjct: 131 K-----IHSW 135

[Close]

BLAST of CsaV3_UNG208670 vs. ExPASy Swiss-Prot
Match: Q37626 (NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.5e-29
Identity = 69/118 (58.47%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 5   VLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGAIAVS 64
           + SS  L+SG +V++A+NPVHSVLF + VF N +GLL+LLGLDFFA+IF VV++GAIAV 
Sbjct: 7   IFSSLTLISGSLVIQARNPVHSVLFLVLVFFNAAGLLVLLGLDFFALIFLVVYVGAIAVL 66

Query: 65  FLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTTSL 123
           FLFVVMM +I+I EI E+ LRYLPV G++G++F +EI  ++DN+ IPLL      T+L
Sbjct: 67  FLFVVMMLNIRITEISEKRLRYLPVGGVLGVLFLFEICILIDNDCIPLLSYDIENTAL 124

[Close]

BLAST of CsaV3_UNG208670 vs. ExPASy TrEMBL
Match: A0A6N2MNA9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS398258 PE=3 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 4.7e-63
Identity = 131/139 (94.24%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMV RAKNPVHSVLF I VFRNTSGLL+LLGLDF AMIFPVVHIGA
Sbjct: 306 MILSVLSSPALVSGLMVARAKNPVHSVLFSILVFRNTSGLLILLGLDFSAMIFPVVHIGA 365

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVS IIGLIFWWE+FFILDNESIPLLPTQR TT
Sbjct: 366 IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSAIIGLIFWWEMFFILDNESIPLLPTQRKTT 425

Query: 121 SLRYTVYAGKSDFISSHDW 140
           SLRYTVYAGKSDFISSHDW
Sbjct: 426 SLRYTVYAGKSDFISSHDW 444

[Close]

BLAST of CsaV3_UNG208670 vs. ExPASy TrEMBL
Match: G3EU06 (NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. ExPASy TrEMBL
Match: G3EIY7 (NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis sativus OX=3659 GN=nad6 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. ExPASy TrEMBL
Match: A0A3Q9CS19 (NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis melo var. momordica OX=2034244 GN=nad6 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. ExPASy TrEMBL
Match: A0A2H4YAS2 (NADH-ubiquinone oxidoreductase chain 6 OS=Hymenodictyon parvifolium OX=170357 GN=nad6 PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 5.2e-62
Identity = 129/130 (99.23%), Postives = 130/130 (100.00%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. TAIR 10
Match: ATMG00270.1 (NADH dehydrogenase 6 )

HSP 1 Score: 243.4 bits (620), Expect = 1.1e-64
Identity = 127/130 (97.69%), Postives = 129/130 (99.23%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMV RAKNPVHSVLFPIPVFR+TSGLLLLLGLDFFAMIFPVVHIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEIFFILDNESIPLLPTQRNTT 120
           IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWE+FFILDNESIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 121 SLRYTVYAGK 131
           SLRYTVYAGK
Sbjct: 121 SLRYTVYAGK 130

[Close]

BLAST of CsaV3_UNG208670 vs. TAIR 10
Match: AT2G07718.1 (Cytochrome b/b6 protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMV RAKN VHSVLFPIP+F + + L       +F  +  + H+  
Sbjct: 45  MILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQL-----FHYFCRLPIIKHLAT 104

Query: 61  IAVSFLFVVMMF 73
                LF++  F
Sbjct: 105 KCQLLLFLISHF 111

[Close]

BLAST of CsaV3_UNG208670 vs. TAIR 10
Match: ATMG00590.1 (Cytochrome b/b6 protein )

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-08
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60
           MILSVLSSPALVSGLMV RAKN VHSVLFPIP+F + + L       +F  +  + H+  
Sbjct: 45  MILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQL-----FHYFCRLPIIKHLAT 104

Query: 61  IAVSFLFVVMMF 73
                LF++  F
Sbjct: 105 KCQLLLFLISHF 111

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG208670 vs. NCBI nr


Match Name	E-value	Identity	Description
AEN56128.1	4.9e-62	100.00	hypothetical protein [Cucumis melo subsp. melo] >AZP40285.1 NADH dehydrogenase s...	[more]
YP_004849335.1	4.9e-62	100.00	NADH dehydrogenase subunit 6 [Cucumis sativus] >ADZ10762.1 NADH dehydrogenase su...	[more]
AUD57051.1	1.1e-61	99.23	NADH dehydrogenase subunit 6 [Cephalanthus occidentalis] >AUD57053.1 NADH dehydr...	[more]
QYB18028.1	1.1e-61	99.23	NADH dehydrogenase subunit 6 [Damnacanthus indicus var. indicus] >QYB18156.1 NAD...	[more]
AUD57052.1	1.1e-61	99.23	NADH dehydrogenase subunit 6 [Cubanola domingensis] >AUD57054.1 NADH dehydrogena...	[more]

BLAST of CsaV3_UNG208670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P60498	1.6e-63	97.69	NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=...	[more]
Q02500	4.4e-58	92.31	NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 ...	[more]
P60497	6.4e-57	93.08	NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE...	[more]
P26850	1.7e-41	72.31	NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 P...	[more]
Q37626	1.5e-29	58.47	NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 ...	[more]

BLAST of CsaV3_UNG208670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6N2MNA9	4.7e-63	94.24	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS398258 PE=3 SV=...	[more]
G3EU06	2.4e-62	100.00	NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis melo subsp. melo OX=412675 PE=...	[more]
G3EIY7	2.4e-62	100.00	NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis sativus OX=3659 GN=nad6 PE=3 S...	[more]
A0A3Q9CS19	2.4e-62	100.00	NADH-ubiquinone oxidoreductase chain 6 OS=Cucumis melo var. momordica OX=2034244...	[more]
A0A2H4YAS2	5.2e-62	99.23	NADH-ubiquinone oxidoreductase chain 6 OS=Hymenodictyon parvifolium OX=170357 GN...	[more]

BLAST of CsaV3_UNG208670 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00270.1	1.1e-64	97.69	NADH dehydrogenase 6	[more]
AT2G07718.1	1.9e-08	51.39	Cytochrome b/b6 protein	[more]
ATMG00590.1	1.9e-08	51.39	Cytochrome b/b6 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR042106	NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	GENE3D	1.20.120.1200		coord: 1..134 e-value: 7.8E-26 score: 92.5
IPR001457	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	PFAM	PF00499	Oxidored_q3	coord: 14..109 e-value: 2.0E-20 score: 73.0
None	No IPR available	PANTHER	PTHR33269:SF5	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6	coord: 1..139
None	No IPR available	PANTHER	PTHR33269	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6	coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG208670.1	CsaV3_UNG208670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity