CsaV3_UNG208500 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_UNG208500
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionNADH dehydrogenase subunit 7
Locationscaffold18_1: 672385 .. 672579 (+)
RNA-Seq ExpressionCsaV3_UNG208500
SyntenyCsaV3_UNG208500
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGGCTGGGCCACCTCGAATGGCGTGAGCCGCATGCGGGGAGACCCGCACGTACGGTTTTTAGGGGGATCTGGTCGAAAGACCGGCGCCCACCCGACTAGAGGGACTGAGAAATTAATAGAGTACAAAACTTATCTTCAAGCTTTACCTTATTCTGATCGTTCAGAGGGCGATCGCGGAGTCACTGAATGA

mRNA sequence

ATGCTGGGCTGGGCCACCTCGAATGGCGTGAGCCGCATGCGGGGAGACCCGCACGTACGGTTTTTAGGGGGATCTGGTCGAAAGACCGGCGCCCACCCGACTAGAGGGACTGAGAAATTAATAGAGTACAAAACTTATCTTCAAGCTTTACCTTATTCTGATCGTTCAGAGGGCGATCGCGGAGTCACTGAATGA

Coding sequence (CDS)

ATGCTGGGCTGGGCCACCTCGAATGGCGTGAGCCGCATGCGGGGAGACCCGCACGTACGGTTTTTAGGGGGATCTGGTCGAAAGACCGGCGCCCACCCGACTAGAGGGACTGAGAAATTAATAGAGTACAAAACTTATCTTCAAGCTTTACCTTATTCTGATCGTTCAGAGGGCGATCGCGGAGTCACTGAATGA

Protein sequence

MLGWATSNGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSEGDRGVTE*
Homology
BLAST of CsaV3_UNG208500 vs. NCBI nr
Match: KAE8647103.1 (hypothetical protein Csa_021706 [Cucumis sativus] >KAE8647119.1 hypothetical protein Csa_021741 [Cucumis sativus] >KAE8647130.1 hypothetical protein Csa_021543 [Cucumis sativus])

HSP 1 Score: 138.3 bits (347), Expect = 2.4e-29
Identity = 64/64 (100.00%), Postives = 64/64 (100.00%), Query Frame = 0

Query: 1  MLGWATSNGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSEGDR 60
          MLGWATSNGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSEGDR
Sbjct: 1  MLGWATSNGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSEGDR 60

Query: 61 GVTE 65
          GVTE
Sbjct: 61 GVTE 64

BLAST of CsaV3_UNG208500 vs. NCBI nr
Match: GFQ01817.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Phtheirospermum japonicum])

HSP 1 Score: 127.9 bits (320), Expect = 3.2e-26
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 0

Query: 1  MLGWATSNGVSRMRGDPHVRFLGGSGRKTG-AHPTRGTEKLIEYKTYLQALPYSDRSEGD 60
          M GWATSNGVSRMRGDPHV FLGGSGRKTG AHPTRGTEKLIEYKTYLQALPYSDRSEGD
Sbjct: 1  MPGWATSNGVSRMRGDPHVWFLGGSGRKTGLAHPTRGTEKLIEYKTYLQALPYSDRSEGD 60

Query: 61 RGVTE 65
          RGVTE
Sbjct: 61 RGVTE 65

BLAST of CsaV3_UNG208500 vs. NCBI nr
Match: AZP40280.1 (NADH dehydrogenase subunit 7 [Cucumis melo var. momordica])

HSP 1 Score: 107.8 bits (268), Expect = 3.5e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 8   NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSE 58
           NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSE
Sbjct: 55  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSE 104

BLAST of CsaV3_UNG208500 vs. NCBI nr
Match: KAG4199295.1 (hypothetical protein ERO13_A05G138400v2 [Gossypium hirsutum])

HSP 1 Score: 78.2 bits (191), Expect = 2.9e-11
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 6  TSNGVSRMRGDPHVRFLGGSGRKTGA-HPTRGTEKLIEYKTYLQALPYSDRSEGDRGVTE 65
          T NGV+ M GD HVRFLGG G + G  +PTRGTEKLIEYKTYLQALP     EG+ GVTE
Sbjct: 15 TLNGVNSMWGDLHVRFLGGYGPRVGCINPTRGTEKLIEYKTYLQALPCFASFEGNCGVTE 74

BLAST of CsaV3_UNG208500 vs. NCBI nr
Match: TYH16843.1 (hypothetical protein ES288_A05G147500v1 [Gossypium darwinii])

HSP 1 Score: 76.6 bits (187), Expect = 8.6e-11
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 6  TSNGVSRMRGDPHVRFLGGSGRKTGA-HPTRGTEKLIEYKTYLQALPYSDRSEGDRGVTE 65
          T NGV+ M G+ HVRFLGG G + G  +PTRGTEKLIEYKTYLQALP     EG+ GVTE
Sbjct: 15 TLNGVNSMWGELHVRFLGGYGPRVGCINPTRGTEKLIEYKTYLQALPCFASFEGNCGVTE 74

BLAST of CsaV3_UNG208500 vs. ExPASy Swiss-Prot
Match: Q36450 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX=4096 GN=NAD7 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-07
Identity = 29/50 (58.00%), Postives = 31/50 (62.00%), Query Frame = 0

Query: 8  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSE 58
          NG    R +PH+  L            RGTEKLIEYKTYLQALPYSDRSE
Sbjct: 33 NGEVVERAEPHIGLL-----------QRGTEKLIEYKTYLQALPYSDRSE 71

BLAST of CsaV3_UNG208500 vs. ExPASy Swiss-Prot
Match: P93306 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX=3702 GN=NAD7 PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 6.6e-06
Identity = 27/50 (54.00%), Postives = 30/50 (60.00%), Query Frame = 0

Query: 8  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSE 58
          NG    R +PH+  L            RGTEKLIEYKTYLQALPY DRS+
Sbjct: 33 NGEVVERAEPHIGLL-----------HRGTEKLIEYKTYLQALPYFDRSD 71

BLAST of CsaV3_UNG208500 vs. ExPASy Swiss-Prot
Match: Q37619 (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Prototheca wickerhamii OX=3111 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-05
Identity = 26/48 (54.17%), Postives = 27/48 (56.25%), Query Frame = 0

Query: 8  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDR 56
          NG    R DPH+  L            RGTEKLIEYK YLQALPY DR
Sbjct: 37 NGEVVQRSDPHIGLL-----------HRGTEKLIEYKNYLQALPYFDR 73

BLAST of CsaV3_UNG208500 vs. ExPASy Swiss-Prot
Match: Q2RU37 (NADH-quinone oxidoreductase subunit D OS=Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG 4362 / NCIMB 8255 / S1) OX=269796 GN=nuoD PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.5e-05
Identity = 25/42 (59.52%), Postives = 26/42 (61.90%), Query Frame = 0

Query: 14 RGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDR 56
          R DPH+  L            RGTEKLIEYKTYLQALPY DR
Sbjct: 37 RADPHIGLL-----------HRGTEKLIEYKTYLQALPYFDR 67

BLAST of CsaV3_UNG208500 vs. ExPASy Swiss-Prot
Match: Q9TC96 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea OX=31312 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.3e-05
Identity = 26/48 (54.17%), Postives = 27/48 (56.25%), Query Frame = 0

Query: 8  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDR 56
          NG    R DPH+  L            RGTEKLIEYKTY QALPY DR
Sbjct: 37 NGEVVARADPHIGLL-----------HRGTEKLIEYKTYTQALPYFDR 73

BLAST of CsaV3_UNG208500 vs. ExPASy TrEMBL
Match: A0A3Q7EEY5 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.1e-23
Identity = 57/65 (87.69%), Postives = 57/65 (87.69%), Query Frame = 0

Query: 1  MLGWATSNGVSRMRGDPHVRFLGGSGRK-TGAHPTRGTEKLIEYKTYLQALPYSDRSEGD 60
          MLGWATSNGVSRM GD HVRFLGGSGRK  GAHPTRGTEKLIEYKTYLQALPY DR EGD
Sbjct: 1  MLGWATSNGVSRMLGDLHVRFLGGSGRKLAGAHPTRGTEKLIEYKTYLQALPYFDRLEGD 60

Query: 61 RGVTE 65
            VTE
Sbjct: 61 HEVTE 65

BLAST of CsaV3_UNG208500 vs. ExPASy TrEMBL
Match: A0A3S9JIE4 (NADH dehydrogenase subunit 7 OS=Cucumis melo var. momordica OX=2034244 GN=nad7 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0

Query: 8   NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSE 58
           NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSE
Sbjct: 55  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSE 104

BLAST of CsaV3_UNG208500 vs. ExPASy TrEMBL
Match: A0A4D8YFM0 (Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_047296 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.9e-13
Identity = 41/59 (69.49%), Postives = 44/59 (74.58%), Query Frame = 0

Query: 7   SNGVSRMRGDPHVRFLGG-SGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSEGDRGVTE 65
           + G  R+   P  R +G    R  GAHPTRGTEKLIEYKTYLQALPYSDRSEGDRGVTE
Sbjct: 81  TTGKDRLAKTPQARSVGDLVERPAGAHPTRGTEKLIEYKTYLQALPYSDRSEGDRGVTE 139

BLAST of CsaV3_UNG208500 vs. ExPASy TrEMBL
Match: A0A0E0DVR6 (Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-11
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 27 RKTGAHPTRGTEKLIEYKTYLQALPYSDRSEGDRGVTE 65
          R  GAHPTRGTEKLIEYKTYLQALPY DRSEGDRGVTE
Sbjct: 52 RPAGAHPTRGTEKLIEYKTYLQALPYFDRSEGDRGVTE 89

BLAST of CsaV3_UNG208500 vs. ExPASy TrEMBL
Match: A0A5D2GG31 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A05G147500v1 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.2e-11
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 6  TSNGVSRMRGDPHVRFLGGSGRKTGA-HPTRGTEKLIEYKTYLQALPYSDRSEGDRGVTE 65
          T NGV+ M G+ HVRFLGG G + G  +PTRGTEKLIEYKTYLQALP     EG+ GVTE
Sbjct: 15 TLNGVNSMWGELHVRFLGGYGPRVGCINPTRGTEKLIEYKTYLQALPCFASFEGNCGVTE 74

BLAST of CsaV3_UNG208500 vs. TAIR 10
Match: ATMG00510.1 (NADH dehydrogenase subunit 7 )

HSP 1 Score: 52.4 bits (124), Expect = 1.6e-07
Identity = 28/50 (56.00%), Postives = 31/50 (62.00%), Query Frame = 0

Query: 8  NGVSRMRGDPHVRFLGGSGRKTGAHPTRGTEKLIEYKTYLQALPYSDRSE 58
          NG    R +PH+  L            RGTEKLIEYKTYLQALPYSDRS+
Sbjct: 33 NGEVVERAEPHIGSL-----------HRGTEKLIEYKTYLQALPYSDRSD 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647103.12.4e-29100.00hypothetical protein Csa_021706 [Cucumis sativus] >KAE8647119.1 hypothetical pro... [more]
GFQ01817.13.2e-2695.38NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 [Phtheirospermum japonicum... [more]
AZP40280.13.5e-20100.00NADH dehydrogenase subunit 7 [Cucumis melo var. momordica][more]
KAG4199295.12.9e-1168.33hypothetical protein ERO13_A05G138400v2 [Gossypium hirsutum][more]
TYH16843.18.6e-1166.67hypothetical protein ES288_A05G147500v1 [Gossypium darwinii][more]
Match NameE-valueIdentityDescription
Q364504.6e-0758.00NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX... [more]
P933066.6e-0654.00NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX... [more]
Q376192.5e-0554.17NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Prototheca wickerhamii OX=3111 ... [more]
Q2RU372.5e-0559.52NADH-quinone oxidoreductase subunit D OS=Rhodospirillum rubrum (strain ATCC 1117... [more]
Q9TC963.3e-0554.17NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea O... [more]
Match NameE-valueIdentityDescription
A0A3Q7EEY58.1e-2387.69Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=3 SV=1[more]
A0A3S9JIE41.7e-20100.00NADH dehydrogenase subunit 7 OS=Cucumis melo var. momordica OX=2034244 GN=nad7 P... [more]
A0A4D8YFM09.9e-1369.49Uncharacterized protein OS=Salvia splendens OX=180675 GN=Saspl_047296 PE=4 SV=1[more]
A0A0E0DVR63.2e-1192.11Uncharacterized protein OS=Oryza meridionalis OX=40149 PE=4 SV=1[more]
A0A5D2GG314.2e-1166.67Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_A05G147500v1 PE=... [more]
Match NameE-valueIdentityDescription
ATMG00510.11.6e-0756.00NADH dehydrogenase subunit 7 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36
IPR029014[NiFe]-hydrogenase, large subunitSUPERFAMILY56762HydB/Nqo4-likecoord: 33..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_UNG208500.1CsaV3_UNG208500.1mRNA