CsaV3_UNG208480 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_UNG208480
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	NADH dehydrogenase subunit 7
Location	scaffold18_1: 671040 .. 671228 (+)
RNA-Seq Expression	CsaV3_UNG208480
Synteny	CsaV3_UNG208480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACTAGGAACAGGCAAATCAAAAATTTCACTTCGAATTCCGGACCTCAACATCCTGCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCCCATATTGGATTACTCCAGTGCGGCACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCGCTAG

mRNA sequence

ATGACGACTAGGAACAGGCAAATCAAAAATTTCACTTCGAATTCCGGACCTCAACATCCTGCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCCCATATTGGATTACTCCAGTGCGGCACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCGCTAG

Coding sequence (CDS)

ATGACGACTAGGAACAGGCAAATCAAAAATTTCACTTCGAATTCCGGACCTCAACATCCTGCTGCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCCCATATTGGATTACTCCAGTGCGGCACGAAGCCGCTGACGCCGAGTCGGCTCCTATGCCGCTAG

Protein sequence

MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLLCR*

Homology

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BLAST of CsaV3_UNG208480 vs. NCBI nr
Match: KAE8647102.1 (hypothetical protein Csa_021723 [Cucumis sativus] >KAE8647129.1 hypothetical protein Csa_021539 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 3.7e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60
          MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL
Sbjct: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60

Query: 61 CR 63
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsaV3_UNG208480 vs. NCBI nr
Match: KAG6621708.1 (hypothetical protein I3842_Q012300 [Carya illinoinensis])

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1   MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60
           MTTRNRQIKNFTSN GPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL
Sbjct: 154 MTTRNRQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 213

Query: 61  CR 63
           CR
Sbjct: 214 CR 215

[Close]

BLAST of CsaV3_UNG208480 vs. NCBI nr
Match: KAG7952403.1 (hypothetical protein I3843_12G056900 [Carya illinoinensis])

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1   MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60
           MTTRNRQIKNFTSN GPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL
Sbjct: 155 MTTRNRQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 214

Query: 61  CR 63
           CR
Sbjct: 215 CR 216

[Close]

BLAST of CsaV3_UNG208480 vs. NCBI nr
Match: YP_009306109.1 (NADH dehydrogenase subunit 7 [Corchorus capsularis] >AOO95946.1 NADH dehydrogenase subunit 7 [Corchorus capsularis])

HSP 1 Score: 128.6 bits (322), Expect = 1.8e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60
          MTTRNRQIKNFTSN GPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL
Sbjct: 1  MTTRNRQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60

Query: 61 CR 63
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsaV3_UNG208480 vs. NCBI nr
Match: KAG6633581.1 (hypothetical protein CIPAW_12G057700 [Carya illinoinensis])

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60
          MTTRNRQIKNFTSN GPQHPAAHGVSRSVLEMNGEVVER EPHIGLLQCGTKPLTPSRLL
Sbjct: 37 MTTRNRQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERVEPHIGLLQCGTKPLTPSRLL 96

Query: 61 CR 63
          CR
Sbjct: 97 CR 98

[Close]

BLAST of CsaV3_UNG208480 vs. ExPASy Swiss-Prot
Match: Q36450 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX=4096 GN=NAD7 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.1e-21
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPL 55
          MTT+NRQIKNFTSN GPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQ GT+ L
Sbjct: 1  MTTKNRQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQRGTEKL 54

[Close]

BLAST of CsaV3_UNG208480 vs. ExPASy Swiss-Prot
Match: P93306 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX=3702 GN=NAD7 PE=1 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 4.3e-18
Identity = 45/54 (83.33%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPL 55
          MTTR RQIKNFT N GPQHPAAHGV R VLEMNGEVVERAEPHIGLL  GT+ L
Sbjct: 1  MTTRKRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKL 54

[Close]

BLAST of CsaV3_UNG208480 vs. ExPASy Swiss-Prot
Match: P80264 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (Fragment) OS=Solanum tuberosum OX=4113 GN=NAD7 PE=1 SV=3)

HSP 1 Score: 86.3 bits (212), Expect = 1.4e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLL 48
          MTT+NRQI+NFT N GPQHPAAHGV R VLEMNGEVVERAEPHIGLL
Sbjct: 1  MTTKNRQIQNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLL 47

[Close]

BLAST of CsaV3_UNG208480 vs. ExPASy Swiss-Prot
Match: Q37720 (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Pylaiella littoralis OX=2885 GN=NAD7 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.9e-14
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 0


Query: 5  NRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 59
          N+++K+FT N GPQHPAAHGV R +LE+NGEVV+RA+PHIGLL  GT+ L  ++
Sbjct: 9  NKKLKHFTINFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAK 62

[Close]

BLAST of CsaV3_UNG208480 vs. ExPASy Swiss-Prot
Match: A1B495 (NADH-quinone oxidoreductase subunit D OS=Paracoccus denitrificans (strain Pd 1222) OX=318586 GN=nuoD PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 8.3e-14
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 0


Query: 3  TRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSR 59
          T  + I+NF  N GPQHPAAHGV R VLE++GE+VERA+PHIGLL  GT+ L  SR
Sbjct: 19 TGEQSIRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESR 74

[Close]

BLAST of CsaV3_UNG208480 vs. ExPASy TrEMBL
Match: A0A1C9I9S0 (NADH dehydrogenase subunit 7 OS=Corchorus capsularis OX=210143 GN=nad7 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 8.9e-27
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60
          MTTRNRQIKNFTSN GPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL
Sbjct: 1  MTTRNRQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60

Query: 61 CR 63
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsaV3_UNG208480 vs. ExPASy TrEMBL
Match: A0A200QK65 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1251g6 PE=3 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.8e-26
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60
          MTTRN QIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIG LQCGTKPLTPSRLL
Sbjct: 1  MTTRNGQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLQCGTKPLTPSRLL 60

Query: 61 CR 63
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsaV3_UNG208480 vs. ExPASy TrEMBL
Match: A0A6N2KZZ0 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS146020 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 59/62 (95.16%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60
          MTTRN QIKNFTSN GPQHPAAHGVSRSVLEMNGEVVERA+PHIGLLQCGTKPLTPSRLL
Sbjct: 1  MTTRNGQIKNFTSNFGPQHPAAHGVSRSVLEMNGEVVERADPHIGLLQCGTKPLTPSRLL 60

Query: 61 CR 63
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsaV3_UNG208480 vs. ExPASy TrEMBL
Match: A0A3L6PYF8 (NAD(P)H dehydrogenase subunit H OS=Panicum miliaceum OX=4540 GN=C2845_PM16G00630 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60
          MTTRN QIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLT SRLL
Sbjct: 1  MTTRNGQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTLSRLL 60

Query: 61 CR 63
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsaV3_UNG208480 vs. ExPASy TrEMBL
Match: A0A2T7C7E7 (NAD(P)H dehydrogenase subunit H OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_9G272100 PE=3 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 60/62 (96.77%), Postives = 60/62 (96.77%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTPSRLL 60
          MTTRN QIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLT SRLL
Sbjct: 1  MTTRNGQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPLTLSRLL 60

Query: 61 CR 63
          CR
Sbjct: 61 CR 62

[Close]

BLAST of CsaV3_UNG208480 vs. TAIR 10
Match: ATMG00510.1 (NADH dehydrogenase subunit 7 )

HSP 1 Score: 93.6 bits (231), Expect = 6.1e-20
Identity = 46/54 (85.19%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1  MTTRNRQIKNFTSNSGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQCGTKPL 55
          MTTR RQIKNFTSN GPQHPAAHGVSR VLEMNGEVVERAEPHIG L  GT+ L
Sbjct: 1  MTTRKRQIKNFTSNFGPQHPAAHGVSRLVLEMNGEVVERAEPHIGSLHRGTEKL 54

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG208480 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647102.1	3.7e-27	100.00	hypothetical protein Csa_021723 [Cucumis sativus] >KAE8647129.1 hypothetical pro...	[more]
KAG6621708.1	1.8e-26	98.39	hypothetical protein I3842_Q012300 [Carya illinoinensis]	[more]
KAG7952403.1	1.8e-26	98.39	hypothetical protein I3843_12G056900 [Carya illinoinensis]	[more]
YP_009306109.1	1.8e-26	98.39	NADH dehydrogenase subunit 7 [Corchorus capsularis] >AOO95946.1 NADH dehydrogena...	[more]
KAG6633581.1	5.4e-26	96.77	hypothetical protein CIPAW_12G057700 [Carya illinoinensis]	[more]

BLAST of CsaV3_UNG208480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q36450	4.1e-21	90.74	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris OX...	[more]
P93306	4.3e-18	83.33	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana OX...	[more]
P80264	1.4e-16	87.23	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (Fragment) OS=Solanum tube...	[more]
Q37720	4.9e-14	62.96	NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Pylaiella littoralis OX=2885 GN...	[more]
A1B495	8.3e-14	64.29	NADH-quinone oxidoreductase subunit D OS=Paracoccus denitrificans (strain Pd 122...	[more]

BLAST of CsaV3_UNG208480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1C9I9S0	8.9e-27	98.39	NADH dehydrogenase subunit 7 OS=Corchorus capsularis OX=210143 GN=nad7 PE=3 SV=1	[more]
A0A200QK65	5.8e-26	96.77	Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1251g6 PE=3 SV=1	[more]
A0A6N2KZZ0	1.3e-25	95.16	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS146020 PE=3 SV=...	[more]
A0A3L6PYF8	1.7e-25	96.77	NAD(P)H dehydrogenase subunit H OS=Panicum miliaceum OX=4540 GN=C2845_PM16G00630...	[more]
A0A2T7C7E7	1.7e-25	96.77	NAD(P)H dehydrogenase subunit H OS=Panicum hallii var. hallii OX=1504633 GN=GQ55...	[more]

BLAST of CsaV3_UNG208480 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00510.1	6.1e-20	85.19	NADH dehydrogenase subunit 7	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029014	[NiFe]-hydrogenase, large subunit	GENE3D	1.10.645.10		coord: 10..60 e-value: 2.3E-11 score: 45.1
IPR029014	[NiFe]-hydrogenase, large subunit	SUPERFAMILY	56762	HydB/Nqo4-like	coord: 7..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG208480.1	CsaV3_UNG208480.1	mRNA