CsaV3_UNG208420 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_UNG208420
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	scaffold18_1: 654170 .. 654790 (-)
RNA-Seq Expression	CsaV3_UNG208420
Synteny	CsaV3_UNG208420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGTAGAGGAGAGACTGATTCTGACTTTATGGTCTCGGATAGAGATAAGGGCGGGCTTCTTCGATGCCCAGGGGTGGCTACCTATTCATAACAATTTCTTACAAGTCAATGAGTTCTACTTGGAGAAGAATATAATCACGACTCCTAGCGCCCCTGACCTGAACGTTTATGGGCTTTGCCAAATCTTGCTCGGAGACGAGCCGAGCTTCCACATTGCCATTAGAAAGAAGGATGAAAGCGAGAGGGCTCTTTATCTACGAATCGACGAAGACGATTTGGATAAGTTGCAAATGAACCCGCTGGAGCTTTCCCTAATTCCTGTTCCAAAGAGGAACCCGGAAGAGAAAGACAAAGAGCCCCGAGGGGGGTTGTTCTACAACCACAGGAGACTAGAGGGGCAATGCTGGGATTACATACAATGGCCCCTATTTCTGAAAAGAAAACAAGGAAAGGGGGCTCCTATAATAATTCTTATCATCTGTCGGGAAGACCAAATACTTGAAGAGAAAGAAAGCATGGAACGCCCCACGGAGCGGGAGAGCCTTTATGAGAAATTCACTGATGAACAAGAAAACCAGGGGACCCGCCTTCTAGTAGGCTATGAGCATGAGCATGCATAA

mRNA sequence

ATTGTAGAGGAGAGACTGATTCTGACTTTATGGTCTCGGATAGAGATAAGGGCGGGCTTCTTCGATGCCCAGGGGTGGCTACCTATTCATAACAATTTCTTACAAGTCAATGAGTTCTACTTGGAGAAGAATATAATCACGACTCCTAGCGCCCCTGACCTGAACGTTTATGGGCTTTGCCAAATCTTGCTCGGAGACGAGCCGAGCTTCCACATTGCCATTAGAAAGAAGGATGAAAGCGAGAGGGCTCTTTATCTACGAATCGACGAAGACGATTTGGATAAGTTGCAAATGAACCCGCTGGAGCTTTCCCTAATTCCTGTTCCAAAGAGGAACCCGGAAGAGAAAGACAAAGAGCCCCGAGGGGGGTTGTTCTACAACCACAGGAGACTAGAGGGGCAATGCTGGGATTACATACAATGGCCCCTATTTCTGAAAAGAAAACAAGGAAAGGGGGCTCCTATAATAATTCTTATCATCTGTCGGGAAGACCAAATACTTGAAGAGAAAGAAAGCATGGAACGCCCCACGGAGCGGGAGAGCCTTTATGAGAAATTCACTGATGAACAAGAAAACCAGGGGACCCGCCTTCTAGTAGGCTATGAGCATGAGCATGCATAA

Coding sequence (CDS)

ATTGTAGAGGAGAGACTGATTCTGACTTTATGGTCTCGGATAGAGATAAGGGCGGGCTTCTTCGATGCCCAGGGGTGGCTACCTATTCATAACAATTTCTTACAAGTCAATGAGTTCTACTTGGAGAAGAATATAATCACGACTCCTAGCGCCCCTGACCTGAACGTTTATGGGCTTTGCCAAATCTTGCTCGGAGACGAGCCGAGCTTCCACATTGCCATTAGAAAGAAGGATGAAAGCGAGAGGGCTCTTTATCTACGAATCGACGAAGACGATTTGGATAAGTTGCAAATGAACCCGCTGGAGCTTTCCCTAATTCCTGTTCCAAAGAGGAACCCGGAAGAGAAAGACAAAGAGCCCCGAGGGGGGTTGTTCTACAACCACAGGAGACTAGAGGGGCAATGCTGGGATTACATACAATGGCCCCTATTTCTGAAAAGAAAACAAGGAAAGGGGGCTCCTATAATAATTCTTATCATCTGTCGGGAAGACCAAATACTTGAAGAGAAAGAAAGCATGGAACGCCCCACGGAGCGGGAGAGCCTTTATGAGAAATTCACTGATGAACAAGAAAACCAGGGGACCCGCCTTCTAGTAGGCTATGAGCATGAGCATGCATAA

Protein sequence

IVEERLILTLWSRIEIRAGFFDAQGWLPIHNNFLQVNEFYLEKNIITTPSAPDLNVYGLCQILLGDEPSFHIAIRKKDESERALYLRIDEDDLDKLQMNPLELSLIPVPKRNPEEKDKEPRGGLFYNHRRLEGQCWDYIQWPLFLKRKQGKGAPIIILIICREDQILEEKESMERPTERESLYEKFTDEQENQGTRLLVGYEHEHA*

Homology

[Close]

BLAST of CsaV3_UNG208420 vs. NCBI nr
Match: TYK22923.1 (hypothetical protein E5676_scaffold80300G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 2.4e-38
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   IVEERLILTLWSRIEIRAGFFDAQGWLPIHNNFLQVNEFYLEKNIITTPSAPDLNVYGLC 60
           IVEERLILTLWSRIEIRAGFFDAQGWLPIHNNFLQVNEFYLEKNIITTPSAPDLNVYGLC
Sbjct: 100 IVEERLILTLWSRIEIRAGFFDAQGWLPIHNNFLQVNEFYLEKNIITTPSAPDLNVYGLC 159

Query: 61  QILLGDEPSFHIAIRKKDESER 83
           QILLGDEPSFHIAIRKKDE E+
Sbjct: 160 QILLGDEPSFHIAIRKKDEIEK 181

[Close]

BLAST of CsaV3_UNG208420 vs. ExPASy TrEMBL
Match: A0A5D3DH84 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold80300G00010 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-38
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1   IVEERLILTLWSRIEIRAGFFDAQGWLPIHNNFLQVNEFYLEKNIITTPSAPDLNVYGLC 60
           IVEERLILTLWSRIEIRAGFFDAQGWLPIHNNFLQVNEFYLEKNIITTPSAPDLNVYGLC
Sbjct: 100 IVEERLILTLWSRIEIRAGFFDAQGWLPIHNNFLQVNEFYLEKNIITTPSAPDLNVYGLC 159

Query: 61  QILLGDEPSFHIAIRKKDESER 83
           QILLGDEPSFHIAIRKKDE E+
Sbjct: 160 QILLGDEPSFHIAIRKKDEIEK 181

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG208420 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22923.1	2.4e-38	97.56	hypothetical protein E5676_scaffold80300G00010 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_UNG208420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_UNG208420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DH84	1.1e-38	97.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_UNG208420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG208420.1	CsaV3_UNG208420.1	mRNA