CsaV3_UNG128990 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_UNG128990
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	polyadenylate-binding protein 2-like
Location	scaffold66: 47003 .. 50223 (+)
RNA-Seq Expression	CsaV3_UNG128990
Synteny	CsaV3_UNG128990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTCTACGCATCGAACGAGGAGATTTCTAGAAACCAAAGCGGAATTGTGAGCGAACGAGATATGGAGGAAGAGGAGCACGAGGTATACGGTGGAGAAATCCCAGTTGAAGGGGAGATGGAAGGAGACGTTGACATGTCTGCCGGCGACGACGACGCTGTCAAGGTTGCCATTTGTTCTTTCTCTTTCTGGTTCTCGTGCTTTGGAGAGAATCAGAAGAATTACAATTGTGATCGTTTATGTATTTCAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAAGAAGCAGCGGCTCTTCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCTGTGCAAGGTTGTTTTCTCATGATTACGCATTATTGTTTTCGTTAGAAACATCTAGTCATGGAATCTCTTGAATTTGGATTGTGATGTTGTAAGCGATGATTTGGGGCTTGAAATTTTTGATGTGTTGTTGTGATATATTTGCTAGTATTACCACATATCTGTTTCGTTTCTTGCAAATTGCTAGCATATTACCACATAGCTGTGCAAGGTTGACAAAACTCTTGACATTATGGTTCGTAATTGTTACTTTTAAATTTTAGAATATGTTTAAGCTTGTGTTTAGTTTTATGTAACCTAGGGGAGTAATAATCGTATGTGATTATGGTTTTAGACAGAAACCAATATTGAATTATGCGATCATGTTGGTTGAAAGTTTCTTAAACTGGATGAATTTTAAAGTATGGTATTATAGTTAGTTTGTTTCTATAATTATTCTCCAATTTGGCCTATCTTATTTTACCTATTGTTGTTATGTTTGATGCAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTATTTGTTGGCAATGTGAGAAGAAAAATGTCCCTACTGATGTTCTTTAGATTTGAGAAAAACTTTTTAGTTATTTGATCTGTGGAAAAATGTTATTGAAATGAGGAATTTCTGCAAAAATTCAAAAAGAAAAAAAAAAGAAGGAAGAAGAATAGAAAGAAAGAAGAAAACTGTGAACGATGGTTGAAATACTGGTATAATGGGAAAAAATCAGTGAGAAAAAGAAAGAAAAAAAGAAAAAGAATCTGAAACATCAAAAACCATTAGTGAGTTGTTGCATTTAGAACAAAGGGACTGTTGCTAGTAGAACTTATGTTGCTGTAAAACATGCGCTTTGGAGGCTGGGACCGTTAAATGTGGAATAATGATGTCGATGGCTCAACTCTAGGTGACAACTCAAATGTCTCCGAGGAAGCAGAGGCGAGTCAAGTGCATGCAATTTTAGTTGCAGAGCCTTGTCAATGCTCGCAGTATTATCGTTTGTCTCACAAATGAGCTAAAAGGTGGAGGCGAGGGTGTAAGATAAACGCTTTTTTGTGGAATTATTTTTCTAGTTTGTGCTTCATTTGACTCGGTTAGACCAAATGTTGGATTTTAATGCATGCATTTCACCTTAACCAGGTGATCTTTGAAAGACTATTAGTCCTTTTCTTCATATTAGAAAATTTTACTAGATTTATTTATTAATCTAGACTTTTCCTTTTAGTTAGAAACTCAACCTGTCATCTTCCGGCAGAGAGTCTTCTAGTTTCATAGTGGTAATTTTATTTCAAAACTATGTGAACTAAGATTAATGTGAGAAATCCTCCATGTTGAAGAATAAATACCTCATTCTCAATCATATCTAATGTGGAACTGTTTTCTACTACTTATAATTGATCTATTAGCAGAGGGAGGCATGCTTGGACATGCATCTGCCATGTGAATCTCATGCCTCTGATTGACTGCTACTTCTACATATGTTCATTGAACATATGAGTTGGATTTTCGTGGTGATTTGGTGATTTTGTTCATAGTTAATAATTTCTGATTCACTTCCCATGCCATTGGAAGTTTATTACTTCTTAATGTTGCTCTGGTGTATTTATCCCCAAGCCTTGTTGATTACATGTGATGAAGTTTGCTTTTCTTTTTTTGTTTTTGTTTTTGTACAAAGCTTCTTAGCGTAAAACTTTATTAAGAAACCAAACAATTAAGTCACTGAAAAAGTAAGTAGTATTTATATTTATATTAAAAGCTAAACAACAATCATAAGACTTTTTTTTTAAAACATACTAACTTAATTATTGCTGTCTGATGTGTTCTTCGAACAGAGAACACTAGCTTTGTATTCACTTTTATAGAACTTAACTATTTTATGCTCAAAGCTCTACTTCAACAATCAACGTCCTTGTTTTGAAGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAAGAGGCTCTCGTTCTGAATGAATCTGAGCTACATGGGCGGCAACTGAAGGTGAGTCTTCCATTCTCTAGGTTTTCCATAAAAAATAAAAAGGTTTTTCGTTCACAAAAAAAAAAAAAAGGAAATTTCTGGAAGGAGAAACCTTTCTGGTTCACTGGTTTGGTTTGGTGTGAATAGATAGATATAGGTTAAATTTCAAATTTGGTCGTAGGGTTTGAGTGATGTTAGTTATGTTAGAATTGAGTCGTAATGGTTCGTAATTAATATTTACTCCCTACGGTTTCATAAAACCTTCACAGATAGGTTCAACGATAAAGACATTTATGAGAATTTTATCAAATAATAGGGACTGTCTGTGAGGTTTTGTCAAAACTATAGAGACTAAATTCTATCTTTACTCTAACACTTCAATTTCACAAACCCTAGGAACAAATTTGTAATTTACTTCAACCAGATAGATATCATGCAACGCTTGGGAACTTCAATATCACTCTGACCAATATTGACATTATTTGCTTGATTACACCATTCCAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTGCACGTCGCTATAACCCGTACGTGGGATTTAGGAGACCTTATGCACCACCATATTTCTATTCACCTTATGGATACGGGTACAGTTTCTAGTTTCCTAATCTTGCATTGTCATGGAAATTGTTGATTCTGCCAGTTTCTTGATCCTTCAATATCCCAATGCAGGAAGATGCCCCGGTTTCGTAGGTCCATGAGGTACATGCCTTATTATTAG

mRNA sequence

ATGCAGTTCTACGCATCGAACGAGGAGATTTCTAGAAACCAAAGCGGAATTGTGAGCGAACGAGATATGGAGGAAGAGGAGCACGAGGTATACGGTGGAGAAATCCCAGTTGAAGGGGAGATGGAAGGAGACGTTGACATGTCTGCCGGCGACGACGACGCTGTCAAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAAGAAGCAGCGGCTCTTCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCTGTGCAAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTATTTGTTGGCAATAGCCTTGTCAATGCTCGCAGTATTATCGTTTGTCTCACAAATGAGCTAAAAGGTGGAGGCGAGGGTAAACTCAACCTGTCATCTTCCGGCAGAGAGTCTTCTAGTTTCATAGTGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAAGAGGCTCTCGTTCTGAATGAATCTGAGCTACATGGGCGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTGCACGTCGCTATAACCCGTACGTGGGATTTAGGAGACCTTATGCACCACCATATTTCTATTCACCTTATGGATACGGGAAGATGCCCCGGTTTCGTAGGTCCATGAGGTACATGCCTTATTATTAG

Coding sequence (CDS)

ATGCAGTTCTACGCATCGAACGAGGAGATTTCTAGAAACCAAAGCGGAATTGTGAGCGAACGAGATATGGAGGAAGAGGAGCACGAGGTATACGGTGGAGAAATCCCAGTTGAAGGGGAGATGGAAGGAGACGTTGACATGTCTGCCGGCGACGACGACGCTGTCAAGGAGCTTGACGAGATGAAAAAGCGCTTGAAGGAGATGGAGGAAGAAGCAGCGGCTCTTCGAGAAATGCAGGCCAAGGTTGAAAAAGAAATGGGAGCTGTGCAAGATCCTGCTGGTACATCAGCTAGTCAAGCAGGCAAGGAGGAGACTGATTCACGATCAGTATTTGTTGGCAATAGCCTTGTCAATGCTCGCAGTATTATCGTTTGTCTCACAAATGAGCTAAAAGGTGGAGGCGAGGGTAAACTCAACCTGTCATCTTCCGGCAGAGAGTCTTCTAGTTTCATAGTGGTTGACTATGCATGCACACCCGAAGAAGTGCAACAGCATTTCCAATCCTGTGGTACTGTCAACAGAGTGACTATTTTAACTGATAAATTTGGTCAGCCGAAGGGCTTTGCCTATGTAGAATTTCTTGAAGCTGAAGCTGTTCAAGAGGCTCTCGTTCTGAATGAATCTGAGCTACATGGGCGGCAACTGAAGGTTTTGCCCAAGAGAACAAATGTTCCTGGTATGAAGCAATATCGTGCACGTCGCTATAACCCGTACGTGGGATTTAGGAGACCTTATGCACCACCATATTTCTATTCACCTTATGGATACGGGAAGATGCCCCGGTTTCGTAGGTCCATGAGGTACATGCCTTATTATTAG

Protein sequence

MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNARSIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY*

Homology

[Close]

BLAST of CsaV3_UNG128990 vs. NCBI nr
Match: KAE8637153.1 (hypothetical protein CSA_004635 [Cucumis sativus])

HSP 1 Score: 525.0 bits (1351), Expect = 3.8e-145
Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60
           MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE
Sbjct: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR 120
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR 120

Query: 121 SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD 180
           SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 121 SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD 180

Query: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 240
           KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG
Sbjct: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 240

Query: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 273
           FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 272

[Close]

BLAST of CsaV3_UNG128990 vs. NCBI nr
Match: KAE8637180.1 (hypothetical protein CSA_018811 [Cucumis sativus])

HSP 1 Score: 513.8 bits (1322), Expect = 8.8e-142
Identity = 267/267 (100.00%), Postives = 267/267 (100.00%), Query Frame = 0


Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60
           MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE
Sbjct: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR 120
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR 120

Query: 121 SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD 180
           SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 121 SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD 180

Query: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 240
           KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG
Sbjct: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 240

Query: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMR 268
           FRRPYAPPYFYSPYGYGKMPRFRRSMR
Sbjct: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMR 267

[Close]

BLAST of CsaV3_UNG128990 vs. NCBI nr
Match: KGN53209.1 (hypothetical protein Csa_014786 [Cucumis sativus])

HSP 1 Score: 436.0 bits (1120), Expect = 2.3e-118
Identity = 234/272 (86.03%), Postives = 234/272 (86.03%), Query Frame = 0


Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60
           MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE
Sbjct: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR 120
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGN      
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGN------ 120

Query: 121 SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD 180
                                           VDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 121 --------------------------------VDYACTPEEVQQHFQSCGTVNRVTILTD 180

Query: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 240
           KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG
Sbjct: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 234

Query: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 273
           FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]

BLAST of CsaV3_UNG128990 vs. NCBI nr
Match: XP_008453809.2 (PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo] >KAA0044711.1 polyadenylate-binding protein 2 isoform X1 [Cucumis melo var. makuwa] >TYK16876.1 polyadenylate-binding protein 2 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 4.9e-116
Identity = 230/272 (84.56%), Postives = 231/272 (84.93%), Query Frame = 0


Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60
           MQFYASNEEISRN+S I SERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE
Sbjct: 1   MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR 120
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSA QAGKEETDSRSVFVGN      
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGN------ 120

Query: 121 SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD 180
                                           VDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 121 --------------------------------VDYACTPEEVQQHFQSCGTVNRVTILTD 180

Query: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 240
           KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG
Sbjct: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 234

Query: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 273
           FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]

BLAST of CsaV3_UNG128990 vs. NCBI nr
Match: XP_004146877.1 (polyadenylate-binding protein 2 [Cucumis sativus] >XP_031745674.1 polyadenylate-binding protein 2-like [Cucumis sativus] >XP_031745676.1 polyadenylate-binding protein 2-like [Cucumis sativus])

HSP 1 Score: 396.0 bits (1016), Expect = 2.7e-106
Identity = 212/250 (84.80%), Postives = 212/250 (84.80%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 82
           MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 83  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNARSIIVCLTNELKGGGEGKLNLSS 142
           EKEMGAVQDPAGTSASQAGKEETDSRSVFVGN                            
Sbjct: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGN---------------------------- 120

Query: 143 SGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEA 202
                     VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEA
Sbjct: 121 ----------VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEA 180

Query: 203 LVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRF 262
           LVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRF
Sbjct: 181 LVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRF 212

Query: 263 RRSMRYMPYY 273
           RRSMRYMPYY
Sbjct: 241 RRSMRYMPYY 212

[Close]

BLAST of CsaV3_UNG128990 vs. ExPASy Swiss-Prot
Match: Q9FJN9 (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 8.4e-87
Identity = 180/258 (69.77%), Postives = 195/258 (75.58%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEG-------DVDMSAGDDDAVKELDEMKKRLKEMEEEAAAL 82
           MEEEEHEVYGGEIP  GEM+G       D+DM+A DDDAVKELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 83  REMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNARSIIVCLTNELKGGGE 142
           REMQAKVEKEMGA QDPA  +A+QAGKEE D+RSVFVGN                     
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGN--------------------- 120

Query: 143 GKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE 202
                            VDYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEF+E
Sbjct: 121 -----------------VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVE 180

Query: 203 AEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG--FRRPYAPPYFYSP 262
            EAVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R RR+NPY+G  FRRP+  PY YSP
Sbjct: 181 VEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSP 219

Query: 263 YGYGKMPRFRRSMRYMPY 272
           YGYGK PRFRR MRYMPY
Sbjct: 241 YGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of CsaV3_UNG128990 vs. ExPASy Swiss-Prot
Match: Q9LX90 (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 8.7e-84
Identity = 173/254 (68.11%), Postives = 187/254 (73.62%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEM---EGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQ 82
           MEEEEHEVYGGEIP  G+    + D+DMSA D+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 83  AKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNARSIIVCLTNELKGGGEGKLN 142
           AKVEKEMGA QDPA  +A+Q GKEE D+RSV+VGN                         
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGN------------------------- 120

Query: 143 LSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAV 202
                        VDYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E EAV
Sbjct: 121 -------------VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAV 180

Query: 203 QEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG--FRRPYAPPYFYSPYGYG 262
           QEAL LNESELHGRQLKV PKRTNVPGMKQY   R+NP +G  FRRP+ PPYFYSPYGYG
Sbjct: 181 QEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYG 216

Query: 263 KMPRFRRSMRYMPY 272
           K PRFRR MRYMPY
Sbjct: 241 KAPRFRRPMRYMPY 216

[Close]

BLAST of CsaV3_UNG128990 vs. ExPASy Swiss-Prot
Match: Q93VI4 (Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 1.2e-64
Identity = 150/265 (56.60%), Postives = 177/265 (66.79%), Query Frame = 0


Query: 24  EEEEHEVYGGEIP--VEGEME--------GDVDMSAGDDD-----AVKELDEMKKRLKEM 83
           +E+EHEVYGGEIP   EGEM+        G+   +AGD++     + ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 84  EEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNARSIIVCLTN 143
           EEEA ALREMQAK EK+MGA QDP+G   S A KEE DSRS++VGN              
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGN-------------- 124

Query: 144 ELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF 203
                                   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF
Sbjct: 125 ------------------------VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF 184

Query: 204 AYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQY--RARRYNPYVGFRRPYA 263
           AYVEF+E EAVQ +L+LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  
Sbjct: 185 AYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGV 227

Query: 264 PPYFYSPYGYGKMPRFRRSMRYMPY 272
           P  FY PY YG++PRFRR MRY PY
Sbjct: 245 P--FYPPYAYGRVPRFRRPMRYRPY 227

[Close]

BLAST of CsaV3_UNG128990 vs. ExPASy Swiss-Prot
Match: O14327 (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pab2 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.3e-28
Identity = 85/183 (46.45%), Postives = 100/183 (54.64%), Query Frame = 0


Query: 52  DDAVKELDEMKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVF 111
           D   KEL EMK+R+ EME EAA LR MQ +++ E         T A +  KE  D++SV+
Sbjct: 8   DTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNE---------TEALRNDKESIDAQSVY 67

Query: 112 VGNSLVNARSIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGT 171
           VGN                                      VDY+ TPEE+Q HF SCG+
Sbjct: 68  VGN--------------------------------------VDYSVTPEELQSHFASCGS 127

Query: 172 VNRVTILTDKF-GQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQY 231
           VNRVTIL DKF G PKGFAY+EF E   V  AL+LN S LH R LKV PKRTNVPGM + 
Sbjct: 128 VNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRG 143

Query: 232 RAR 234
           R R
Sbjct: 188 RGR 143

[Close]

BLAST of CsaV3_UNG128990 vs. ExPASy Swiss-Prot
Match: Q9DDY9 (Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.4e-26
Identity = 102/275 (37.09%), Postives = 131/275 (47.64%), Query Frame = 0


Query: 12  RNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEE 71
           R  SG      +EE E E    E P  GE+ GD  +         EL+ +K R++EMEEE
Sbjct: 72  RGGSGGGGAGGLEELEDEELEEEEP--GELTGDQTIED------PELEAIKARVREMEEE 131

Query: 72  AAALREMQAKVEKEMGAVQDPAGTS---ASQAGKEETDSRSVFVGNSLVNARSIIVCLTN 131
           A  L+E+Q +VEK+M     P        S   K E D+RS++VGN              
Sbjct: 132 AEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGN-------------- 191

Query: 132 ELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKG 191
                                   VDY  T EE++ HF  CG+VNRVTIL DKF G PKG
Sbjct: 192 ------------------------VDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG 251

Query: 192 FAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMK---------QYRAR--RYN 251
           FAY+EF + E+V+ +L L+ES   GRQ+KV+PKRTN PG+          +YRAR   Y+
Sbjct: 252 FAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGISTTDRGFPRARYRARASSYS 296

Query: 252 PYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYMPY 272
               F   Y P     P G     R R +  Y PY
Sbjct: 312 SRSRFYSGYTP----RPRGRVYRGRARATSWYTPY 296

[Close]

BLAST of CsaV3_UNG128990 vs. ExPASy TrEMBL
Match: A0A0A0KWF2 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 1.1e-118
Identity = 234/272 (86.03%), Postives = 234/272 (86.03%), Query Frame = 0


Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60
           MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE
Sbjct: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR 120
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGN      
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGN------ 120

Query: 121 SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD 180
                                           VDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 121 --------------------------------VDYACTPEEVQQHFQSCGTVNRVTILTD 180

Query: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 240
           KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG
Sbjct: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 234

Query: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 273
           FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]

BLAST of CsaV3_UNG128990 vs. ExPASy TrEMBL
Match: A0A5D3D298 (Polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00070 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.4e-116
Identity = 230/272 (84.56%), Postives = 231/272 (84.93%), Query Frame = 0


Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60
           MQFYASNEEISRN+S I SERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE
Sbjct: 1   MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR 120
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSA QAGKEETDSRSVFVGN      
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGN------ 120

Query: 121 SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD 180
                                           VDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 121 --------------------------------VDYACTPEEVQQHFQSCGTVNRVTILTD 180

Query: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 240
           KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG
Sbjct: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 234

Query: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 273
           FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]

BLAST of CsaV3_UNG128990 vs. ExPASy TrEMBL
Match: A0A1S3BX92 (polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494425 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 2.4e-116
Identity = 230/272 (84.56%), Postives = 231/272 (84.93%), Query Frame = 0


Query: 1   MQFYASNEEISRNQSGIVSERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60
           MQFYASNEEISRN+S I SERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE
Sbjct: 1   MQFYASNEEISRNRSEIASERDMEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDE 60

Query: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNAR 120
           MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSA QAGKEETDSRSVFVGN      
Sbjct: 61  MKKRLKEMEEEAAALREMQAKVEKEMGAVQDPAGTSAGQAGKEETDSRSVFVGN------ 120

Query: 121 SIIVCLTNELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTD 180
                                           VDYACTPEEVQQHFQSCGTVNRVTILTD
Sbjct: 121 --------------------------------VDYACTPEEVQQHFQSCGTVNRVTILTD 180

Query: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 240
           KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG
Sbjct: 181 KFGQPKGFAYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG 234

Query: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 273
           FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY
Sbjct: 241 FRRPYAPPYFYSPYGYGKMPRFRRSMRYMPYY 234

[Close]

BLAST of CsaV3_UNG128990 vs. ExPASy TrEMBL
Match: A0A6J1C6V0 (polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008517 PE=4 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 6.0e-104
Identity = 206/250 (82.40%), Postives = 209/250 (83.60%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 82
           MEEEEHEVYGGEIPVEGEM+GDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 83  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNARSIIVCLTNELKGGGEGKLNLSS 142
           EKEMGAVQDPAGTSASQAGKEETDSRSVFVGN                            
Sbjct: 61  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGN---------------------------- 120

Query: 143 SGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEA 202
                     VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEA
Sbjct: 121 ----------VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEA 180

Query: 203 LVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRF 262
           L+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPY+GFRRPY PPYFYSPYGYGKMPRF
Sbjct: 181 LLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYMGFRRPYVPPYFYSPYGYGKMPRF 212

Query: 263 RRSMRYMPYY 273
           RR MRYMPYY
Sbjct: 241 RRPMRYMPYY 212

[Close]

BLAST of CsaV3_UNG128990 vs. ExPASy TrEMBL
Match: A0A6J1EN98 (polyadenylate-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435898 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 2.3e-103
Identity = 205/250 (82.00%), Postives = 208/250 (83.20%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQAKV 82
           MEEEEHEVYGGEIPVEGEM+GDVDMS  DDDAVKELDEMKKRLKEMEEEAAALREMQAKV
Sbjct: 1   MEEEEHEVYGGEIPVEGEMDGDVDMSVADDDAVKELDEMKKRLKEMEEEAAALREMQAKV 60

Query: 83  EKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNARSIIVCLTNELKGGGEGKLNLSS 142
           EKEMGAVQDPAGTS SQAGKEETDSRSVFVGN                            
Sbjct: 61  EKEMGAVQDPAGTSTSQAGKEETDSRSVFVGN---------------------------- 120

Query: 143 SGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEA 202
                     VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEA+AVQEA
Sbjct: 121 ----------VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEADAVQEA 180

Query: 203 LVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVGFRRPYAPPYFYSPYGYGKMPRF 262
           L+LNESELHGRQLKVLPKRTNVPGMKQYR RRYNPYVGFRRPYAPPYFYSPYGYGKMPRF
Sbjct: 181 LLLNESELHGRQLKVLPKRTNVPGMKQYRPRRYNPYVGFRRPYAPPYFYSPYGYGKMPRF 212

Query: 263 RRSMRYMPYY 273
           RRSMRYMPYY
Sbjct: 241 RRSMRYMPYY 212

[Close]

BLAST of CsaV3_UNG128990 vs. TAIR 10
Match: AT5G65260.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 321.6 bits (823), Expect = 6.0e-88
Identity = 180/258 (69.77%), Postives = 195/258 (75.58%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEMEG-------DVDMSAGDDDAVKELDEMKKRLKEMEEEAAAL 82
           MEEEEHEVYGGEIP  GEM+G       D+DM+A DDDAVKELDEMKKRLKEME+EAAAL
Sbjct: 1   MEEEEHEVYGGEIPDVGEMDGDMEALNPDLDMAAADDDAVKELDEMKKRLKEMEDEAAAL 60

Query: 83  REMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNARSIIVCLTNELKGGGE 142
           REMQAKVEKEMGA QDPA  +A+QAGKEE D+RSVFVGN                     
Sbjct: 61  REMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGN--------------------- 120

Query: 143 GKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLE 202
                            VDYACTPEEVQQHFQ+CGTV+RVTILTDKFGQPKGFAYVEF+E
Sbjct: 121 -----------------VDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVE 180

Query: 203 AEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG--FRRPYAPPYFYSP 262
            EAVQEAL LNESELHGRQLKVL KRTNVPG+KQ+R RR+NPY+G  FRRP+  PY YSP
Sbjct: 181 VEAVQEALQLNESELHGRQLKVLQKRTNVPGLKQFRGRRFNPYMGYRFRRPFMSPYMYSP 219

Query: 263 YGYGKMPRFRRSMRYMPY 272
           YGYGK PRFRR MRYMPY
Sbjct: 241 YGYGKAPRFRRPMRYMPY 219

[Close]

BLAST of CsaV3_UNG128990 vs. TAIR 10
Match: AT5G10350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 311.6 bits (797), Expect = 6.2e-85
Identity = 173/254 (68.11%), Postives = 187/254 (73.62%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEM---EGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQ 82
           MEEEEHEVYGGEIP  G+    + D+DMSA D+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 83  AKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNARSIIVCLTNELKGGGEGKLN 142
           AKVEKEMGA QDPA  +A+Q GKEE D+RSV+VGN                         
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGN------------------------- 120

Query: 143 LSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAV 202
                        VDYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E EAV
Sbjct: 121 -------------VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAV 180

Query: 203 QEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG--FRRPYAPPYFYSPYGYG 262
           QEAL LNESELHGRQLKV PKRTNVPGMKQY   R+NP +G  FRRP+ PPYFYSPYGYG
Sbjct: 181 QEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYG 216

Query: 263 KMPRFRRSMRYMPY 272
           K PRFRR MRYMPY
Sbjct: 241 KAPRFRRPMRYMPY 216

[Close]

BLAST of CsaV3_UNG128990 vs. TAIR 10
Match: AT5G10350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 286.6 bits (732), Expect = 2.1e-77
Identity = 161/240 (67.08%), Postives = 175/240 (72.92%), Query Frame = 0


Query: 23  MEEEEHEVYGGEIPVEGEM---EGDVDMSAGDDDAVKELDEMKKRLKEMEEEAAALREMQ 82
           MEEEEHEVYGGEIP  G+    + D+DMSA D+DAV EL EMK+RLKEMEEEAAALREMQ
Sbjct: 1   MEEEEHEVYGGEIPEVGDTDVPDPDIDMSAADEDAVTELAEMKRRLKEMEEEAAALREMQ 60

Query: 83  AKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNARSIIVCLTNELKGGGEGKLN 142
           AKVEKEMGA QDPA  +A+Q GKEE D+RSV+VGN                         
Sbjct: 61  AKVEKEMGATQDPASMAANQEGKEEVDARSVYVGN------------------------- 120

Query: 143 LSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAV 202
                        VDYACTPEEVQ HFQ+CGTVNRVTIL DKFGQPKGFAYVEF+E EAV
Sbjct: 121 -------------VDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAV 180

Query: 203 QEALVLNESELHGRQLKVLPKRTNVPGMKQYRARRYNPYVG--FRRPYAPPYFYSPYGYG 258
           QEAL LNESELHGRQLKV PKRTNVPGMKQY   R+NP +G  FRRP+ PPYFYSPYGYG
Sbjct: 181 QEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRRPFVPPYFYSPYGYG 202

[Close]

BLAST of CsaV3_UNG128990 vs. TAIR 10
Match: AT5G51120.1 (polyadenylate-binding protein 1 )

HSP 1 Score: 248.1 bits (632), Expect = 8.4e-66
Identity = 150/265 (56.60%), Postives = 177/265 (66.79%), Query Frame = 0


Query: 24  EEEEHEVYGGEIP--VEGEME--------GDVDMSAGDDD-----AVKELDEMKKRLKEM 83
           +E+EHEVYGGEIP   EGEM+        G+   +AGD++     + ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 84  EEEAAALREMQAKVEKEMGAVQDPAGTSASQAGKEETDSRSVFVGNSLVNARSIIVCLTN 143
           EEEA ALREMQAK EK+MGA QDP+G   S A KEE DSRS++VGN              
Sbjct: 65  EEEAGALREMQAKAEKDMGASQDPSG-GVSAAEKEEVDSRSIYVGN-------------- 124

Query: 144 ELKGGGEGKLNLSSSGRESSSFIVVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF 203
                                   VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF
Sbjct: 125 ------------------------VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGF 184

Query: 204 AYVEFLEAEAVQEALVLNESELHGRQLKVLPKRTNVPGMKQY--RARRYNPYVGFRRPYA 263
           AYVEF+E EAVQ +L+LNESELHGRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  
Sbjct: 185 AYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGV 227

Query: 264 PPYFYSPYGYGKMPRFRRSMRYMPY 272
           P  FY PY YG++PRFRR MRY PY
Sbjct: 245 P--FYPPYAYGRVPRFRRPMRYRPY 227

[Close]

BLAST of CsaV3_UNG128990 vs. TAIR 10
Match: AT5G51120.2 (polyadenylate-binding protein 1 )

HSP 1 Score: 226.1 bits (575), Expect = 3.4e-59
Identity = 147/302 (48.68%), Postives = 175/302 (57.95%), Query Frame = 0


Query: 24  EEEEHEVYGGEIP--VEGEME--------GDVDMSAGDDD-----AVKELDEMKKRLKEM 83
           +E+EHEVYGGEIP   EGEM+        G+   +AGD++     + ++L++MKKR+KE+
Sbjct: 5   DEQEHEVYGGEIPEEEEGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEI 64

Query: 84  EEEAAALREMQAKVEKEMGAVQ-------------------------------------D 143
           EEEA ALREMQAK EK+MGA Q                                     +
Sbjct: 65  EEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLSRNLLEFEYEKE 124

Query: 144 PAGTSASQAGKEETDSRSVFVGNSLVNARSIIVCLTNELKGGGEGKLNLSSSGRESSSFI 203
              +  S A KEE DSRS++VGN                                     
Sbjct: 125 IINSGVSAAEKEEVDSRSIYVGN------------------------------------- 184

Query: 204 VVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEAEAVQEALVLNESELH 263
            VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEF+E EAVQ +L+LNESELH
Sbjct: 185 -VDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELH 244

Query: 264 GRQLKVLPKRTNVPGMKQY--RARRYNPYVGFRRPYAPPYFYSPYGYGKMPRFRRSMRYM 272
           GRQ+KV  KRTNVPGM+Q+  R R + P  GF  P  P  FY PY YG++PRFRR MRY 
Sbjct: 245 GRQIKVSAKRTNVPGMRQFRGRGRPFRPMRGF-MPGVP--FYPPYAYGRVPRFRRPMRYR 265

The following BLAST results are available for this feature:

BLAST of CsaV3_UNG128990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637153.1	3.8e-145	100.00	hypothetical protein CSA_004635 [Cucumis sativus]	[more]
KAE8637180.1	8.8e-142	100.00	hypothetical protein CSA_018811 [Cucumis sativus]	[more]
KGN53209.1	2.3e-118	86.03	hypothetical protein Csa_014786 [Cucumis sativus]	[more]
XP_008453809.2	4.9e-116	84.56	PREDICTED: polyadenylate-binding protein 2 isoform X1 [Cucumis melo] >KAA0044711...	[more]
XP_004146877.1	2.7e-106	84.80	polyadenylate-binding protein 2 [Cucumis sativus] >XP_031745674.1 polyadenylate-...	[more]

BLAST of CsaV3_UNG128990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJN9	8.4e-87	69.77	Polyadenylate-binding protein 2 OS=Arabidopsis thaliana OX=3702 GN=PABN2 PE=1 SV...	[more]
Q9LX90	8.7e-84	68.11	Polyadenylate-binding protein 3 OS=Arabidopsis thaliana OX=3702 GN=PABN3 PE=1 SV...	[more]
Q93VI4	1.2e-64	56.60	Polyadenylate-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=PABN1 PE=1 SV...	[more]
O14327	2.3e-28	46.45	Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC ...	[more]
Q9DDY9	6.4e-26	37.09	Polyadenylate-binding protein 2-A OS=Xenopus laevis OX=8355 GN=pabpn1-a PE=2 SV=...	[more]

BLAST of CsaV3_UNG128990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWF2	1.1e-118	86.03	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G026860 PE=4 SV...	[more]
A0A5D3D298	2.4e-116	84.56	Polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3BX92	2.4e-116	84.56	polyadenylate-binding protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1034944...	[more]
A0A6J1C6V0	6.0e-104	82.40	polyadenylate-binding protein 2-like isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1EN98	2.3e-103	82.00	polyadenylate-binding protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC1114358...	[more]

BLAST of CsaV3_UNG128990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65260.1	6.0e-88	69.77	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.1	6.2e-85	68.11	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G10350.2	2.1e-77	67.08	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G51120.1	8.4e-66	56.60	polyadenylate-binding protein 1	[more]
AT5G51120.2	3.4e-59	48.68	polyadenylate-binding protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 51..85
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..35
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 152..270 coord: 23..115
None	No IPR available	PANTHER	PTHR23236:SF79	SUBFAMILY NOT NAMED	coord: 152..270 coord: 23..115
None	No IPR available	CDD	cd12306	RRM_II_PABPs	coord: 153..218 e-value: 9.01793E-42 score: 136.267
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 153..218 e-value: 8.6E-11 score: 51.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 154..216 e-value: 1.2E-12 score: 47.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 148..222 score: 13.549548
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 37..230 e-value: 1.0E-22 score: 82.7
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 154..246

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_UNG128990.1	CsaV3_UNG128990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding