CsaV3_7G034460 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G034460
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionPhosphoribosylglycinamide formyltransferase
Locationchr7: 21784610 .. 21785198 (-)
RNA-Seq ExpressionCsaV3_7G034460
SyntenyCsaV3_7G034460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTAATAATTGGTAAGTTCTTTCTAACAAATCAAATCCCACTGTAAAATTTTATAGGTTGAATTGATGAGAAAATTTTATAACCAACTTTATTTTGATAATGATTTAAAATTTTATTAAGAGATGGAATTTTATGTTTTATTTTATTAAAAAACAACAATAATAAGGGGAAAGGTCTAAACTCTCTTCTTCTCTTCTCAGTTCTTTTTCGAGAGCATTCTTCTTCTTCTTGGTGAAAGCAGACGCCCCCTCTCTCGACTTCTCTTCAGCTCACTATCTCTCGCACACCGGCTACGGCATAGATTTCCGTCAACAACCTGCCGAAAACCCCAACCCGATTTTCCCTCGCGCTTACCGTCTCCCTATCTCCTCCAGCCGACGTCATCACCTGCGGACTGGCATTGCGCCGTTCGACTCTCTTTCTCCTTGCGCCGCGCTCAAGAGTTCTCCGCCGTCGCATCAAACTCAGGAATCTGGCAGTAGCTTAGTTGTTCGCTCGCGTTGTGAAGTTCTTGTTTCATATTTGTCTTGTACGGCAGCTGTGAATACCGTGGCTCCGCCGTTCTCAGCTAAATTTTGGCTTTGA

mRNA sequence

ATGAGTTCTTTTTCGAGAGCATTCTTCTTCTTCTTGGTGAAAGCAGACGCCCCCTCTCTCGACTTCTCTTCAGCTCACTATCTCTCGCACACCGGCTACGGCATAGATTTCCGTCAACAACCTGCCGAAAACCCCAACCCGATTTTCCCTCGCGCTTACCGTCTCCCTATCTCCTCCAGCCGACGTCATCACCTGCGGACTGGCATTGCGCCGTTCGACTCTCTTTCTCCTTGCGCCGCGCTCAAGAGTTCTCCGCCGTCGCATCAAACTCAGGAATCTGGCAGTAGCTTAGTTGTTCGCTCGCGTTGTGAAGTTCTTGTTTCATATTTGTCTTGTACGGCAGCTGTGAATACCGTGGCTCCGCCGTTCTCAGCTAAATTTTGGCTTTGA

Coding sequence (CDS)

ATGAGTTCTTTTTCGAGAGCATTCTTCTTCTTCTTGGTGAAAGCAGACGCCCCCTCTCTCGACTTCTCTTCAGCTCACTATCTCTCGCACACCGGCTACGGCATAGATTTCCGTCAACAACCTGCCGAAAACCCCAACCCGATTTTCCCTCGCGCTTACCGTCTCCCTATCTCCTCCAGCCGACGTCATCACCTGCGGACTGGCATTGCGCCGTTCGACTCTCTTTCTCCTTGCGCCGCGCTCAAGAGTTCTCCGCCGTCGCATCAAACTCAGGAATCTGGCAGTAGCTTAGTTGTTCGCTCGCGTTGTGAAGTTCTTGTTTCATATTTGTCTTGTACGGCAGCTGTGAATACCGTGGCTCCGCCGTTCTCAGCTAAATTTTGGCTTTGA

Protein sequence

MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSSRRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVAPPFSAKFWL*
Homology
[Close]
BLAST of CsaV3_7G034460 vs. NCBI nr
Match: KGN45489.1 (hypothetical protein Csa_015933 [Cucumis sativus])

HSP 1 Score: 261.5 bits (667), Expect = 3.8e-66
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSS 60
           MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSS
Sbjct: 1   MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSS 60

Query: 61  RRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVA 120
           RRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVA
Sbjct: 61  RRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVA 120

Query: 121 PPFSAKFWL 130
           PPFSAKFWL
Sbjct: 121 PPFSAKFWL 129

[Close]
BLAST of CsaV3_7G034460 vs. NCBI nr
Match: KAA0059399.1 (phosphoribosylglycinamide formyltransferase [Cucumis melo var. makuwa] >TYK03928.1 phosphoribosylglycinamide formyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.9e-10
Identity = 38/45 (84.44%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 85  PPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVAPPFSAKFWL 130
           PPSHQT ESG SLVVRSR EVLVSYLSCTAA NTV P FSAK WL
Sbjct: 93  PPSHQTHESGRSLVVRSRREVLVSYLSCTAAANTVPPLFSAKLWL 137

[Close]
BLAST of CsaV3_7G034460 vs. ExPASy TrEMBL
Match: A0A0A0K9H2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450480 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.8e-66
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0 

Query: 1   MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSS 60
           MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSS
Sbjct: 1   MSSFSRAFFFFLVKADAPSLDFSSAHYLSHTGYGIDFRQQPAENPNPIFPRAYRLPISSS 60

Query: 61  RRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVA 120
           RRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVA
Sbjct: 61  RRHHLRTGIAPFDSLSPCAALKSSPPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVA 120

Query: 121 PPFSAKFWL 130
           PPFSAKFWL
Sbjct: 121 PPFSAKFWL 129

[Close]
BLAST of CsaV3_7G034460 vs. ExPASy TrEMBL
Match: A0A5D3BY35 (Phosphoribosylglycinamide formyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G001250 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.4e-10
Identity = 38/45 (84.44%), Postives = 38/45 (84.44%), Query Frame = 0 

Query: 85  PPSHQTQESGSSLVVRSRCEVLVSYLSCTAAVNTVAPPFSAKFWL 130
           PPSHQT ESG SLVVRSR EVLVSYLSCTAA NTV P FSAK WL
Sbjct: 93  PPSHQTHESGRSLVVRSRREVLVSYLSCTAAANTVPPLFSAKLWL 137

The following BLAST results are available for this feature:
BLAST of CsaV3_7G034460 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN45489.13.8e-66100.00hypothetical protein Csa_015933 [Cucumis sativus][more]
KAA0059399.12.9e-1084.44phosphoribosylglycinamide formyltransferase [Cucumis melo var. makuwa] >TYK03928... [more]
BLAST of CsaV3_7G034460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G034460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9H21.8e-66100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G450480 PE=4 SV=1[more]
A0A5D3BY351.4e-1084.44Phosphoribosylglycinamide formyltransferase OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of CsaV3_7G034460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G034460.1CsaV3_7G034460.1mRNA