CsaV3_7G033060 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TATATATATATATATGTATTTATTTAATATTAGCTATTTGTTGGCCTCTCAAATCAAGTTTAAAAGAAATTCCACCAATATATAAGTCTTCAACCCTAGAAGAGGAAGGGGAAAACAAAGGCTTTATTTTTACATATCCTCATCAATGGAGAACGTTTTGGCAAAGAAATGGGCTTTAATGGCTTGGCTGTTGCTGACCTCGCTCTCCACCGCTAATTCCACCTCTTTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCATCACACCCGGCGTTGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCTTGCATCGTCCCGTCTTTTCCTATTGACGATGCCGATGTCGTCCATCGGCAACAACAGCAAAATCATTTCTTCTGCAAGCTTGGCTGTGCAGCTTCCTCCTGTACTAAGTTTAGCACAAAACAAAATCCAGGTTTGAAATCTACCATTCATTTTTAACAATATATCGTTTGTAAAATACACTTCAAAATAAATGTTAAAAGTTATATAATTTTCTTTCAAATAATTAAACACTTGAAAATGTATATCAAACACGTTACTCGTATCCAATAACTAACTCATTACCTTACTTACGGCAAAGATGAACATTTTCATATTTTTTAACCTGAAATTCTGATAGAAAGCGACTTAATACATAAAATTTATCTCTAATTTGGTTGGTAAGCATTTTTATTTGGAAGATTAGGAGTATATAACAAAGTTGTGACGAAAAGTAATTTTTTTTAATGAAATTTATTTGCTTGGTTCACATGTGAAGTTTTATTTATTAATATTATTATAAATTTTTGTGTGATGCAGGTGAAAGAAAAGTGGGGAGGTGTGTGGATTCTTGCTCTCAAACATGTTCCATGAATTGATGAAAATTGCATCTACTAAATGAAGCCAATGTACTATTTTTTTTTTCTTTTGGAAAAATAAGTGCATAGTATAAGTAATATATATATTATTGTGTTTTATTAGAAATTAAACTATTATTATTGTTGTTGCAATTTCTTTCTATACTAAATTAGAAAGAATATTGGGTTGAAGTGTGTTAAAAAAGGAAAATCAAGTTAGCTTTATATTTTAATTGTTATGGTTACATTTTAGGCCCTTTGACATTTTCTTTCTTTTGAAAATAATGGAGGCTATAAAACAATTAATTACTTCACTTT ATGGAGAACGTTTTGGCAAAGAAATGGGCTTTAATGGCTTGGCTGTTGCTGACCTCGCTCTCCACCGCTAATTCCACCTCTTTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCATCACACCCGGCGTTGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCTTGCATCGTCCCGTCTTTTCCTATTGACGATGCCGATGTCGTCCATCGGCAACAACAGCAAAATCATTTCTTCTGCAAGCTTGGCTGTGCAGCTTCCTCCTGTACTAAGTTTAGCACAAAACAAAATCCAGGTGAAAGAAAAGTGGGGAGGTGTGTGGATTCTTGCTCTCAAACATGTTCCATGAATTGA ATGGAGAACGTTTTGGCAAAGAAATGGGCTTTAATGGCTTGGCTGTTGCTGACCTCGCTCTCCACCGCTAATTCCACCTCTTTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCATCACACCCGGCGTTGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCTTGCATCGTCCCGTCTTTTCCTATTGACGATGCCGATGTCGTCCATCGGCAACAACAGCAAAATCATTTCTTCTGCAAGCTTGGCTGTGCAGCTTCCTCCTGTACTAAGTTTAGCACAAAACAAAATCCAGGTGAAAGAAAAGTGGGGAGGTGTGTGGATTCTTGCTCTCAAACATGTTCCATGAATTGA MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN* Homology
BLAST of CsaV3_7G033060 vs. NCBI nr
Match: XP_011659556.1 (thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_016713 [Cucumis sativus]) HSP 1 Score: 252.3 bits (643), Expect = 2.1e-63 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. NCBI nr
Match: XP_008461039.1 (PREDICTED: thionin-like protein 2 [Cucumis melo]) HSP 1 Score: 243.0 bits (619), Expect = 1.3e-60 Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. NCBI nr
Match: XP_038899383.1 (thionin-like protein 2 [Benincasa hispida]) HSP 1 Score: 208.4 bits (529), Expect = 3.5e-50 Identity = 99/115 (86.09%), Postives = 108/115 (93.91%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. NCBI nr
Match: XP_022953260.1 (thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein 2 [Cucurbita moschata]) HSP 1 Score: 191.8 bits (486), Expect = 3.4e-45 Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. NCBI nr
Match: XP_022992447.1 (thionin-like protein 2 [Cucurbita maxima] >XP_022992448.1 thionin-like protein 2 [Cucurbita maxima]) HSP 1 Score: 190.3 bits (482), Expect = 9.8e-45 Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. ExPASy Swiss-Prot
Match: A8MRP4 (Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 2.5e-11 Identity = 36/102 (35.29%), Postives = 49/102 (48.04%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. ExPASy TrEMBL
Match: A0A0A0K781 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1) HSP 1 Score: 252.3 bits (643), Expect = 1.0e-63 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. ExPASy TrEMBL
Match: A0A1S3CDU4 (thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 6.2e-61 Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. ExPASy TrEMBL
Match: A0A6J1GMH5 (thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1) HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45 Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. ExPASy TrEMBL
Match: A0A6J1JZ84 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1) HSP 1 Score: 190.3 bits (482), Expect = 4.8e-45 Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. ExPASy TrEMBL
Match: A0A6J1CW29 (thionin-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111015320 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 6.7e-39 Identity = 80/120 (66.67%), Postives = 95/120 (79.17%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. TAIR 10
Match: AT1G12663.1 (Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. ) HSP 1 Score: 69.7 bits (169), Expect = 1.8e-12 Identity = 36/102 (35.29%), Postives = 49/102 (48.04%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. TAIR 10
Match: AT1G12672.2 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1). ) HSP 1 Score: 55.8 bits (133), Expect = 2.7e-08 Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 0
BLAST of CsaV3_7G033060 vs. TAIR 10
Match: AT1G12672.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 6.6e-07 Identity = 21/40 (52.50%), Postives = 25/40 (62.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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