CsaV3_7G033060 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G033060
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptionthionin-like protein 2
Locationchr7: 20820033 .. 20821220 (+)
RNA-Seq ExpressionCsaV3_7G033060
SyntenyCsaV3_7G033060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TATATATATATATATGTATTTATTTAATATTAGCTATTTGTTGGCCTCTCAAATCAAGTTTAAAAGAAATTCCACCAATATATAAGTCTTCAACCCTAGAAGAGGAAGGGGAAAACAAAGGCTTTATTTTTACATATCCTCATCAATGGAGAACGTTTTGGCAAAGAAATGGGCTTTAATGGCTTGGCTGTTGCTGACCTCGCTCTCCACCGCTAATTCCACCTCTTTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCATCACACCCGGCGTTGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCTTGCATCGTCCCGTCTTTTCCTATTGACGATGCCGATGTCGTCCATCGGCAACAACAGCAAAATCATTTCTTCTGCAAGCTTGGCTGTGCAGCTTCCTCCTGTACTAAGTTTAGCACAAAACAAAATCCAGGTTTGAAATCTACCATTCATTTTTAACAATATATCGTTTGTAAAATACACTTCAAAATAAATGTTAAAAGTTATATAATTTTCTTTCAAATAATTAAACACTTGAAAATGTATATCAAACACGTTACTCGTATCCAATAACTAACTCATTACCTTACTTACGGCAAAGATGAACATTTTCATATTTTTTAACCTGAAATTCTGATAGAAAGCGACTTAATACATAAAATTTATCTCTAATTTGGTTGGTAAGCATTTTTATTTGGAAGATTAGGAGTATATAACAAAGTTGTGACGAAAAGTAATTTTTTTTAATGAAATTTATTTGCTTGGTTCACATGTGAAGTTTTATTTATTAATATTATTATAAATTTTTGTGTGATGCAGGTGAAAGAAAAGTGGGGAGGTGTGTGGATTCTTGCTCTCAAACATGTTCCATGAATTGATGAAAATTGCATCTACTAAATGAAGCCAATGTACTATTTTTTTTTTCTTTTGGAAAAATAAGTGCATAGTATAAGTAATATATATATTATTGTGTTTTATTAGAAATTAAACTATTATTATTGTTGTTGCAATTTCTTTCTATACTAAATTAGAAAGAATATTGGGTTGAAGTGTGTTAAAAAAGGAAAATCAAGTTAGCTTTATATTTTAATTGTTATGGTTACATTTTAGGCCCTTTGACATTTTCTTTCTTTTGAAAATAATGGAGGCTATAAAACAATTAATTACTTCACTTT

mRNA sequence

ATGGAGAACGTTTTGGCAAAGAAATGGGCTTTAATGGCTTGGCTGTTGCTGACCTCGCTCTCCACCGCTAATTCCACCTCTTTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCATCACACCCGGCGTTGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCTTGCATCGTCCCGTCTTTTCCTATTGACGATGCCGATGTCGTCCATCGGCAACAACAGCAAAATCATTTCTTCTGCAAGCTTGGCTGTGCAGCTTCCTCCTGTACTAAGTTTAGCACAAAACAAAATCCAGGTGAAAGAAAAGTGGGGAGGTGTGTGGATTCTTGCTCTCAAACATGTTCCATGAATTGA

Coding sequence (CDS)

ATGGAGAACGTTTTGGCAAAGAAATGGGCTTTAATGGCTTGGCTGTTGCTGACCTCGCTCTCCACCGCTAATTCCACCTCTTTTCAAGAATGCTACGCCACCTGCTTCGTCATATGCGCCATCACACCCGGCGTTGCCTTCTCCGACTGCCCATTGAGATGCCTGCAAGCTTGCATCGTCCCGTCTTTTCCTATTGACGATGCCGATGTCGTCCATCGGCAACAACAGCAAAATCATTTCTTCTGCAAGCTTGGCTGTGCAGCTTCCTCCTGTACTAAGTTTAGCACAAAACAAAATCCAGGTGAAAGAAAAGTGGGGAGGTGTGTGGATTCTTGCTCTCAAACATGTTCCATGAATTGA

Protein sequence

MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN*
Homology
BLAST of CsaV3_7G033060 vs. NCBI nr
Match: XP_011659556.1 (thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_016713 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 2.1e-63
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 1   MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIV 60
           MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIV
Sbjct: 1   MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIV 60

Query: 61  PSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 120
           PSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN
Sbjct: 61  PSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 119

BLAST of CsaV3_7G033060 vs. NCBI nr
Match: XP_008461039.1 (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 243.0 bits (619), Expect = 1.3e-60
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0

Query: 1   MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIV 60
           MEN+LAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIV
Sbjct: 1   MENILAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIV 60

Query: 61  PSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 120
           PSFPIDD DVVHRQ+QQNHFFCKLGCAASSCTKFSTKQNPGERKV RCVDSCSQTCSM+
Sbjct: 61  PSFPIDDDDVVHRQKQQNHFFCKLGCAASSCTKFSTKQNPGERKVERCVDSCSQTCSMD 119

BLAST of CsaV3_7G033060 vs. NCBI nr
Match: XP_038899383.1 (thionin-like protein 2 [Benincasa hispida])

HSP 1 Score: 208.4 bits (529), Expect = 3.5e-50
Identity = 99/115 (86.09%), Postives = 108/115 (93.91%), Query Frame = 0

Query: 5   LAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFP 64
           +AKKWAL+AWLLL+SLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACI+PSFP
Sbjct: 1   MAKKWALIAWLLLSSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFP 60

Query: 65  IDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 120
           ID+ D VHR Q+QN FFCKLGCA SSCTKFSTKQNP E++VG CVDSCSQTCSM+
Sbjct: 61  IDNND-VHR-QEQNQFFCKLGCAVSSCTKFSTKQNPAEKEVGNCVDSCSQTCSMD 113

BLAST of CsaV3_7G033060 vs. NCBI nr
Match: XP_022953260.1 (thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein 2 [Cucurbita moschata])

HSP 1 Score: 191.8 bits (486), Expect = 3.4e-45
Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 0

Query: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67
           K  LMAWL+L+SL+TANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACI+PSFPI +
Sbjct: 7   KLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIHN 66

Query: 68  A---DVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 120
           A   D VHR QQ+N FFC+LGCAASSCTKFST QNP E+KVG CVDSCS+TCSM+
Sbjct: 67  AAADDDVHR-QQKNQFFCELGCAASSCTKFSTHQNPAEKKVGSCVDSCSRTCSMD 120

BLAST of CsaV3_7G033060 vs. NCBI nr
Match: XP_022992447.1 (thionin-like protein 2 [Cucurbita maxima] >XP_022992448.1 thionin-like protein 2 [Cucurbita maxima])

HSP 1 Score: 190.3 bits (482), Expect = 9.8e-45
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 0

Query: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67
           K  LMAWL+L+SL+TANSTSFQECYATCF+ICAITPGVAFSDCPLRCLQACI+PSFPI +
Sbjct: 7   KLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHN 66

Query: 68  --ADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 120
             AD VHR QQ+N FFC+LGCAASSCTKFST++NP E+KVG CVDSCS+TCSM+
Sbjct: 67  AAADDVHR-QQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCSMD 119

BLAST of CsaV3_7G033060 vs. ExPASy Swiss-Prot
Match: A8MRP4 (Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.5e-11
Identity = 36/102 (35.29%), Postives = 49/102 (48.04%), Query Frame = 0

Query: 17  LTSLSTANSTSFQECYATCFVIC-AITPGVAFSDCPLRCLQACIVPSFPIDDADVVHRQQ 76
           L + + A    F+ECY  C V C A +    +  CP  C + C+    P     V     
Sbjct: 14  LLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSP---PSVSSNNI 73

Query: 77  QQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCS 118
            ++ +FCKLGCA   C   S+ QNP   +V  CVDSCS  C+
Sbjct: 74  DESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCT 112

BLAST of CsaV3_7G033060 vs. ExPASy TrEMBL
Match: A0A0A0K781 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.0e-63
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0

Query: 1   MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIV 60
           MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIV
Sbjct: 1   MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIV 60

Query: 61  PSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 120
           PSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN
Sbjct: 61  PSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 119

BLAST of CsaV3_7G033060 vs. ExPASy TrEMBL
Match: A0A1S3CDU4 (thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.2e-61
Identity = 114/119 (95.80%), Postives = 117/119 (98.32%), Query Frame = 0

Query: 1   MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIV 60
           MEN+LAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIV
Sbjct: 1   MENILAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIV 60

Query: 61  PSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 120
           PSFPIDD DVVHRQ+QQNHFFCKLGCAASSCTKFSTKQNPGERKV RCVDSCSQTCSM+
Sbjct: 61  PSFPIDDDDVVHRQKQQNHFFCKLGCAASSCTKFSTKQNPGERKVERCVDSCSQTCSMD 119

BLAST of CsaV3_7G033060 vs. ExPASy TrEMBL
Match: A0A6J1GMH5 (thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.6e-45
Identity = 93/115 (80.87%), Postives = 103/115 (89.57%), Query Frame = 0

Query: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67
           K  LMAWL+L+SL+TANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACI+PSFPI +
Sbjct: 7   KLGLMAWLVLSSLTTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIIPSFPIHN 66

Query: 68  A---DVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 120
           A   D VHR QQ+N FFC+LGCAASSCTKFST QNP E+KVG CVDSCS+TCSM+
Sbjct: 67  AAADDDVHR-QQKNQFFCELGCAASSCTKFSTHQNPAEKKVGSCVDSCSRTCSMD 120

BLAST of CsaV3_7G033060 vs. ExPASy TrEMBL
Match: A0A6J1JZ84 (thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 4.8e-45
Identity = 91/114 (79.82%), Postives = 104/114 (91.23%), Query Frame = 0

Query: 8   KWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDD 67
           K  LMAWL+L+SL+TANSTSFQECYATCF+ICAITPGVAFSDCPLRCLQACI+PSFPI +
Sbjct: 7   KLGLMAWLVLSSLTTANSTSFQECYATCFLICAITPGVAFSDCPLRCLQACIIPSFPIHN 66

Query: 68  --ADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 120
             AD VHR QQ+N FFC+LGCAASSCTKFST++NP E+KVG CVDSCS+TCSM+
Sbjct: 67  AAADDVHR-QQKNQFFCELGCAASSCTKFSTQKNPAEKKVGSCVDSCSRTCSMD 119

BLAST of CsaV3_7G033060 vs. ExPASy TrEMBL
Match: A0A6J1CW29 (thionin-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111015320 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 6.7e-39
Identity = 80/120 (66.67%), Postives = 95/120 (79.17%), Query Frame = 0

Query: 8   KWAL---MAWLLLTS--LSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPS 67
           KW L   M WL++ S  ++TA STSFQECYATCFVICAITPG +FS+CPL+CLQACI+PS
Sbjct: 7   KWGLSTVMVWLVVVSSVMTTAESTSFQECYATCFVICAITPGASFSECPLKCLQACIIPS 66

Query: 68  FPIDDADVVHR---QQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 120
           FPIDDA        ++  NHFFCKLGCAA+ CT F+T  NP E+KVGRCVDSCS+TCSM+
Sbjct: 67  FPIDDAAATATAADRRTHNHFFCKLGCAATLCTNFTTNHNPAEKKVGRCVDSCSRTCSMD 126

BLAST of CsaV3_7G033060 vs. TAIR 10
Match: AT1G12663.1 (Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. )

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-12
Identity = 36/102 (35.29%), Postives = 49/102 (48.04%), Query Frame = 0

Query: 17  LTSLSTANSTSFQECYATCFVIC-AITPGVAFSDCPLRCLQACIVPSFPIDDADVVHRQQ 76
           L + + A    F+ECY  C V C A +    +  CP  C + C+    P     V     
Sbjct: 14  LLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSP---PSVSSNNI 73

Query: 77  QQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCS 118
            ++ +FCKLGCA   C   S+ QNP   +V  CVDSCS  C+
Sbjct: 74  DESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCT 112

BLAST of CsaV3_7G033060 vs. TAIR 10
Match: AT1G12672.2 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1). )

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-08
Identity = 26/65 (40.00%), Postives = 37/65 (56.92%), Query Frame = 0

Query: 54  CLQACI-VPSFPIDDADVVHRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSC 113
           C++ C+  PS  +D  + ++     N ++CKLGC+   C   S+ QNP   KV  CVDSC
Sbjct: 41  CIKTCLEPPSSQMDSTNEIN----HNDYYCKLGCSTHHCASLSSIQNPNVDKVVDCVDSC 100

Query: 114 SQTCS 118
           S  CS
Sbjct: 101 SDKCS 101

BLAST of CsaV3_7G033060 vs. TAIR 10
Match: AT1G12672.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G12663.1); Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 6.6e-07
Identity = 21/40 (52.50%), Postives = 25/40 (62.50%), Query Frame = 0

Query: 78  NHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCS 118
           N ++CKLGC+   C   S+ QNP   KV  CVDSCS  CS
Sbjct: 24  NDYYCKLGCSTHHCASLSSIQNPNVDKVVDCVDSCSDKCS 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011659556.12.1e-63100.00thionin-like protein 2 [Cucumis sativus] >KGN45343.1 hypothetical protein Csa_01... [more]
XP_008461039.11.3e-6095.80PREDICTED: thionin-like protein 2 [Cucumis melo][more]
XP_038899383.13.5e-5086.09thionin-like protein 2 [Benincasa hispida][more]
XP_022953260.13.4e-4580.87thionin-like protein 2 [Cucurbita moschata] >XP_022953261.1 thionin-like protein... [more]
XP_022992447.19.8e-4579.82thionin-like protein 2 [Cucurbita maxima] >XP_022992448.1 thionin-like protein 2... [more]
Match NameE-valueIdentityDescription
A8MRP42.5e-1135.29Thionin-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At1g12663 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0K7811.0e-63100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G441625 PE=4 SV=1[more]
A0A1S3CDU46.2e-6195.80thionin-like protein 2 OS=Cucumis melo OX=3656 GN=LOC103499745 PE=4 SV=1[more]
A0A6J1GMH51.6e-4580.87thionin-like protein 2 OS=Cucurbita moschata OX=3662 GN=LOC111455863 PE=4 SV=1[more]
A0A6J1JZ844.8e-4579.82thionin-like protein 2 OS=Cucurbita maxima OX=3661 GN=LOC111488748 PE=4 SV=1[more]
A0A6J1CW296.7e-3966.67thionin-like protein 2 OS=Momordica charantia OX=3673 GN=LOC111015320 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G12663.11.8e-1235.29Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant t... [more]
AT1G12672.22.7e-0840.00unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot... [more]
AT1G12672.16.6e-0752.50unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038975Thionin-like proteinPANTHERPTHR36312THIONIN-LIKE PROTEIN 1coord: 10..118
NoneNo IPR availablePANTHERPTHR36312:SF1THIONIN-LIKE PROTEIN 1coord: 10..118

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G033060.1CsaV3_7G033060.1mRNA