CsaV3_7G032760 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G032760
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionHCO3-transporter family
Locationchr7: 20630033 .. 20630584 (-)
RNA-Seq ExpressionCsaV3_7G032760
SyntenyCsaV3_7G032760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGTGAAATGGAAGAAGGCAGGAACCAATAAGGTCAGCCGATTTCACGTGGTTCTAAACCATGTAATTACAACCCACCTCCCTCTTTGTATAAATACCGTCCTCTCACCCTGACTTTCTTCAGTTTATCCTTCTCTTTCAAAATCCCTACATTTCTGCTTCTCTCACATGGCCACCAATTTTGCCGTTTTTCATCCCGCTCCGATCACAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGGAAAGTACCAACCTAACCGCCCGAACGCCGCGGCGCCGAAATGGTGGTCGCCGATCTTCGGATGGTCTTCCGAACCGGACTACGTCGTATCTTCCGCCGCGGAAGTACAATCCATTCAGAATGCCGATCCGGAGCTCCACGGTGGAAGAATCAGATCCAGATTTGCACCTGGATGCTTCACGGAGGAGAAGGCGAAGCTACTCCGAATGAAAACGCGGGAGAGCTCCACTTTCCATGATATTATGTACCATTCGGCGATCGCATCGCGTCTGGCGTCCGACTTGTCGGACCGAAGCAAGAAATAG

mRNA sequence

ATGAATGTGAAATGGAAGAAGGCAGGAACCAATAAGTACCAACCTAACCGCCCGAACGCCGCGGCGCCGAAATGGTGGTCGCCGATCTTCGGATGGTCTTCCGAACCGGACTACGTCGTATCTTCCGCCGCGGAAGTACAATCCATTCAGAATGCCGATCCGGAGCTCCACGGTGGAAGAATCAGATCCAGATTTGCACCTGGATGCTTCACGGAGGAGAAGGCGAAGCTACTCCGAATGAAAACGCGGGAGAGCTCCACTTTCCATGATATTATGTACCATTCGGCGATCGCATCGCGTCTGGCGTCCGACTTGTCGGACCGAAGCAAGAAATAG

Coding sequence (CDS)

ATGAATGTGAAATGGAAGAAGGCAGGAACCAATAAGTACCAACCTAACCGCCCGAACGCCGCGGCGCCGAAATGGTGGTCGCCGATCTTCGGATGGTCTTCCGAACCGGACTACGTCGTATCTTCCGCCGCGGAAGTACAATCCATTCAGAATGCCGATCCGGAGCTCCACGGTGGAAGAATCAGATCCAGATTTGCACCTGGATGCTTCACGGAGGAGAAGGCGAAGCTACTCCGAATGAAAACGCGGGAGAGCTCCACTTTCCATGATATTATGTACCATTCGGCGATCGCATCGCGTCTGGCGTCCGACTTGTCGGACCGAAGCAAGAAATAG

Protein sequence

MNVKWKKAGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRFAPGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK*
Homology
BLAST of CsaV3_7G032760 vs. NCBI nr
Match: KAE8646454.1 (hypothetical protein Csa_016484 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 2.7e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0

Query: 1   MNVKWKKAGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGR 60
           MNVKWKKAGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGR
Sbjct: 1   MNVKWKKAGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGR 60

Query: 61  IRSRFAPGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK 112
           IRSRFAPGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK
Sbjct: 61  IRSRFAPGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK 111

BLAST of CsaV3_7G032760 vs. NCBI nr
Match: XP_008461069.1 (PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo] >KAA0058783.1 uncharacterized protein E6C27_scaffold339G002570 [Cucumis melo var. makuwa] >TYK10577.1 uncharacterized protein E5676_scaffold459G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 7.0e-45
Identity = 93/104 (89.42%), Postives = 95/104 (91.35%), Query Frame = 0

Query: 8   AGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRFAP 67
           A + K QPNR NAA PKWWSPIFGWSSEPDYVVSSAAEVQS+QNADPEL GGR  SRFAP
Sbjct: 19  ASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSVQNADPELDGGRTGSRFAP 78

Query: 68  GCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK 112
           GCFTEEKAKLLRMKT ESSTFHDIMYHSAIASRLASDLSDRSKK
Sbjct: 79  GCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 122

BLAST of CsaV3_7G032760 vs. NCBI nr
Match: XP_038898524.1 (uncharacterized protein LOC120086132 [Benincasa hispida])

HSP 1 Score: 177.2 bits (448), Expect = 8.0e-41
Identity = 87/106 (82.08%), Postives = 94/106 (88.68%), Query Frame = 0

Query: 6   KKAGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRF 65
           + + + K +PNR  A APKWWSPIFGWSSEPDYV+SSAAE QS+ NA+PEL GGR RSRF
Sbjct: 14  RASSSGKSEPNRRKATAPKWWSPIFGWSSEPDYVLSSAAE-QSVLNAEPELEGGRTRSRF 73

Query: 66  APGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK 112
           APGCFTEEKAKLLRMKT ESSTFHDIMYHSAIASRLASDLSDRSKK
Sbjct: 74  APGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 118

BLAST of CsaV3_7G032760 vs. NCBI nr
Match: XP_023004861.1 (uncharacterized protein LOC111498038 [Cucurbita maxima])

HSP 1 Score: 171.8 bits (434), Expect = 3.4e-39
Identity = 83/106 (78.30%), Postives = 93/106 (87.74%), Query Frame = 0

Query: 6   KKAGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRF 65
           + + + K +PNR  AAAPKWWSPIFGWSSEPDY+ SSAA+ Q +QNADPEL GGR +S+F
Sbjct: 14  RASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPVQNADPELDGGRAKSKF 73

Query: 66  APGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK 112
            PGCFTEEKAKLLRMKT ESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 74  LPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of CsaV3_7G032760 vs. NCBI nr
Match: XP_022960101.1 (uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothetical protein SDJN03_12890, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025762.1 hypothetical protein SDJN02_12260, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.0 bits (432), Expect = 5.8e-39
Identity = 83/106 (78.30%), Postives = 93/106 (87.74%), Query Frame = 0

Query: 6   KKAGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRF 65
           + + + K +PNR  AAAPKWWSPIFGWSSEPDY+ SSAA+ Q +QNADPEL GGR +S+F
Sbjct: 14  RASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPVQNADPELDGGRPKSKF 73

Query: 66  APGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK 112
            PGCFTEEKAKLLRMKT ESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 74  LPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of CsaV3_7G032760 vs. ExPASy TrEMBL
Match: A0A0A0K8X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433380 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 9.2e-51
Identity = 100/104 (96.15%), Postives = 102/104 (98.08%), Query Frame = 0

Query: 8   AGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRFAP 67
           + + KYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRFAP
Sbjct: 23  SSSGKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRFAP 82

Query: 68  GCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK 112
           GCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK
Sbjct: 83  GCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK 126

BLAST of CsaV3_7G032760 vs. ExPASy TrEMBL
Match: A0A5D3CF29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002310 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.4e-45
Identity = 93/104 (89.42%), Postives = 95/104 (91.35%), Query Frame = 0

Query: 8   AGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRFAP 67
           A + K QPNR NAA PKWWSPIFGWSSEPDYVVSSAAEVQS+QNADPEL GGR  SRFAP
Sbjct: 19  ASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSVQNADPELDGGRTGSRFAP 78

Query: 68  GCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK 112
           GCFTEEKAKLLRMKT ESSTFHDIMYHSAIASRLASDLSDRSKK
Sbjct: 79  GCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 122

BLAST of CsaV3_7G032760 vs. ExPASy TrEMBL
Match: A0A1S3CEC0 (uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.4e-45
Identity = 93/104 (89.42%), Postives = 95/104 (91.35%), Query Frame = 0

Query: 8   AGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRFAP 67
           A + K QPNR NAA PKWWSPIFGWSSEPDYVVSSAAEVQS+QNADPEL GGR  SRFAP
Sbjct: 19  ASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSVQNADPELDGGRTGSRFAP 78

Query: 68  GCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK 112
           GCFTEEKAKLLRMKT ESSTFHDIMYHSAIASRLASDLSDRSKK
Sbjct: 79  GCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 122

BLAST of CsaV3_7G032760 vs. ExPASy TrEMBL
Match: A0A6J1KTB2 (uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 83/106 (78.30%), Postives = 93/106 (87.74%), Query Frame = 0

Query: 6   KKAGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRF 65
           + + + K +PNR  AAAPKWWSPIFGWSSEPDY+ SSAA+ Q +QNADPEL GGR +S+F
Sbjct: 14  RASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPVQNADPELDGGRAKSKF 73

Query: 66  APGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK 112
            PGCFTEEKAKLLRMKT ESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 74  LPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of CsaV3_7G032760 vs. ExPASy TrEMBL
Match: A0A6J1H6P9 (uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC111460952 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.8e-39
Identity = 83/106 (78.30%), Postives = 93/106 (87.74%), Query Frame = 0

Query: 6   KKAGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRF 65
           + + + K +PNR  AAAPKWWSPIFGWSSEPDY+ SSAA+ Q +QNADPEL GGR +S+F
Sbjct: 14  RASSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAAD-QPVQNADPELDGGRPKSKF 73

Query: 66  APGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDRSKK 112
            PGCFTEEKAKLLRMKT ESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 74  LPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

BLAST of CsaV3_7G032760 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-20
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 0

Query: 8   AGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYV-VSSAAEVQSIQNADPELHGGRIRSRFA 67
           +G+    P++    +  WW+P+FG  S+PDY+ + S+    +    D    G     +F 
Sbjct: 17  SGSGSLNPDQNRKKSAAWWAPLFGLPSDPDYLNIESSCSTVNPDKTDISGSG----QKFR 76

Query: 68  PGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDLSDR 109
            GCFTEEKAK LR KT E+STFHD+MYHSAIASRLASD++ R
Sbjct: 77  RGCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDITGR 114

BLAST of CsaV3_7G032760 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 86.3 bits (212), Expect = 1.7e-17
Identity = 47/99 (47.47%), Postives = 60/99 (60.61%), Query Frame = 0

Query: 7   KAGTNKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAEVQSIQNADPELHGGRIRSRFA 66
           +A +      +   ++  WW+P+FG SSEPDYV  +        N + +L     RS   
Sbjct: 14  RASSESDPARKKPVSSVSWWAPLFGMSSEPDYVNKTV-------NLESDLDKAEKRSLRC 73

Query: 67  PGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDL 106
             C TEEKAK LR KT E+STFHD+MYHSAIASRLASD+
Sbjct: 74  --CLTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDV 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646454.12.7e-57100.00hypothetical protein Csa_016484 [Cucumis sativus][more]
XP_008461069.17.0e-4589.42PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo] >KAA0058783.1 unc... [more]
XP_038898524.18.0e-4182.08uncharacterized protein LOC120086132 [Benincasa hispida][more]
XP_023004861.13.4e-3978.30uncharacterized protein LOC111498038 [Cucurbita maxima][more]
XP_022960101.15.8e-3978.30uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothet... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K8X09.2e-5196.15Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433380 PE=4 SV=1[more]
A0A5D3CF293.4e-4589.42Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CEC03.4e-4589.42uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=... [more]
A0A6J1KTB21.6e-3978.30uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038... [more]
A0A6J1H6P92.8e-3978.30uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC1114609... [more]
Match NameE-valueIdentityDescription
AT1G52720.11.7e-2047.06unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G15630.11.7e-1747.47unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34198OS01G0175100 PROTEINcoord: 8..111
NoneNo IPR availablePANTHERPTHR34198:SF12BNAA05G35680D PROTEINcoord: 8..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G032760.1CsaV3_7G032760.1mRNA