CsaV3_7G032580 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G032580
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	DNA replication complex GINS protein PSF1-like
Location	chr7: 20569735 .. 20572038 (+)
RNA-Seq Expression	CsaV3_7G032580
Synteny	CsaV3_7G032580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCATTAAGCTACAAAACCGAACCGATTTCCCGCCACTTCGTCTCTTAAATTGATATTTACAGAAAGCAACGCGCCCGAATCCCTAATTGCAGAACTTCGTTCCTCCACTACTTCATGCTCTGAAGTTTTTCCATAGGTACTTTCAATTTGCAGTTTTAACCCTATTGATTCTTTTTCTCCACCATCTATCTCTGGTTTAGATTTCGTTTGCGTAATTTCTTTCCAGCAGGACTCGATCTTTGTGTATTTTGCATTGTAATAACGATTTGGAACGATCATTTTTCTTCAGGGAGGTGAAATTTGAATATGTATGGAAGAAAAGCATGCCAATTGGTGAAAGAGTTAGCAAGCGGCGAGAAAGGACAGCTAACACACTTCAATGTGAGTTTACTTGTTTCATTGTTGCTTATATGTATAAACTGAGGTTGTGACCATCTGTTGTTGTTCTTGAGTTGAAATTAATCAAAATTCTGGACAGGGAATCAAAAAATTTTAAGTTCATGAAATGGGTATTTGTGGATTGACTTTCTAAGTGCTTAAAAACGTTTTTTTTTTCAAGTCCAAATATATTTTGCTTGTTTTCACTACTGCAGGAGCATTGTCGACCTATTCATGTTTTCTTGCGTGTGTGTACAATGAACTGTACCATTTTTGTTCAGTTTTTAAATATTCTCTTTTATTGGAAGTACATGGCTTTAAAAGGAATTATGGTTGCCTCTGGTCACGGTAATTCGTCTGTCTCTCAAATCACCTTGTTCATTGTCCTTGTGTCAAGCGATACAATATGTTTTTCTTAGCCTCTTCTTTCCATCTATCTTTAGAAAATTTATATTATATCTAAAATTTTCCACCTTTGTTTTCCTGTTTTTTCAGAGCGACCTATTTGAACAGGTTATTTCAGAATGCCAGCAGCATCATCTTGAGCTTCAGTCCTTGATTAGGTTAAAGATTTTACATTTTTTATTCACATGTTTCACTAATTGATACGATATATAGTTTTGACTGTTAGTAGCAGGTTATCTTAATACTTGTTATTAAACTTTCCTTATCCTATGGACAAGTGTCCTTGGTTGAGGCTAACTATAAGACACGATCTTTATGGAATTTTGTCCTTTCAATAAGTTTATGGTTTGAGAAATCTTCATCTATTTCCCAATGAAATTCAATATGGCCGATCGCCAATATGATAATCTAAAACAGGAAAGTACAGGAAGAAGGATTAGATCTTCAGACAACTAAGAATGAAGACCATTTTGGCGCGCTCATTCATCACCTTGCATTAGTTCGCAACAAACGTTGCCTTATGGCTTATGTGTAAGTGTAACATTATGAGATAAATTTGAAGAACAGTGTTTTTCTTGGTTTGCTAAGTTTTAGTAAATTCCATAATTGTTTGCCAAATAAATGCCACTGTACATGAATACACAGGCATAATCGAGCTGAGATTATAAGAAGTTTGATGTGGAAGGTAGTAGGTTCTATGATTCCACCGGAAATACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTCAAGAAGCATTCTGCCCGTCTTAAAGAATATATGTCAAAACTGGAGTTGGATTTGACTGTGGTAATTTCGAACACCAAACACCAAACTTTACAATAACACATCCTTTTTTACATTTGCAACTCAAATTCCTCAGACTGAAATTTCCAAGTTTATCATTGGCAGGATATGGTGCCACCTAAGGATCCTTATATCCAAGTGAGAGTGCTCGACGATATCGGTGAAGGAATCGTTTTGAGTGATGATAAAACAGCAAACTTTGCACTTCATTCCATACATTTTCTTAAAAGAACTGATGCTGAACAATACATCTCACGGGTGGGAATCTCTGTGAACTTTGGTAGTTCTTGGTATTGCTTGCTTAAATAAATGTGTACTAAACTTGTAATCTTTCGAAAACAGGGATTGATGGAGGAGCTTACAGGCTGACTGATCCACTGGAGTTAGAGTTTAGTTGGAGATGTTTGTTGTAAATTAAGAAGCAAATGAGATAAGAGGCGAAACAAAGGGTGATCCATCCCATTTCTGTAATTATACATAGAGATAATTGATTGTCAATCAAACTTATTTTAGTGGGTTCTTTTTTTCATTTAATTTTATTTGATAATATAAACTTTATGAACTATGGTCCTGTGGTTTGTTTGTAAACCATATTCATAATCAGTCAAATAAGAGACTTTTTTAGAAACTCTGATATTAATTTAGTTAATCAATTTATAAGATATTTTTGTACGTATGAATTCTTAAGATAATGAAAACAAACGTTTCCTT

mRNA sequence

ATGTATGGAAGAAAAGCATGCCAATTGGTGAAAGAGTTAGCAAGCGGCGAGAAAGGACAGCTAACACACTTCAATAGCGACCTATTTGAACAGGTTATTTCAGAATGCCAGCAGCATCATCTTGAGCTTCAGTCCTTGATTAGGAAAGTACAGGAAGAAGGATTAGATCTTCAGACAACTAAGAATGAAGACCATTTTGGCGCGCTCATTCATCACCTTGCATTAGTTCGCAACAAACGTTGCCTTATGGCTTATGTGCATAATCGAGCTGAGATTATAAGAAGTTTGATGTGGAAGGTAGTAGGTTCTATGATTCCACCGGAAATACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTCAAGAAGCATTCTGCCCGTCTTAAAGAATATATGTCAAAACTGGAGTTGGATTTGACTGTGGATATGGTGCCACCTAAGGATCCTTATATCCAAGTGAGAGTGCTCGACGATATCGGTGAAGGAATCGTTTTGAGTGATGATAAAACAGCAAACTTTGCACTTCATTCCATACATTTTCTTAAAAGAACTGATGCTGAACAATACATCTCACGGGGATTGATGGAGGAGCTTACAGGCTGA

Coding sequence (CDS)

ATGTATGGAAGAAAAGCATGCCAATTGGTGAAAGAGTTAGCAAGCGGCGAGAAAGGACAGCTAACACACTTCAATAGCGACCTATTTGAACAGGTTATTTCAGAATGCCAGCAGCATCATCTTGAGCTTCAGTCCTTGATTAGGAAAGTACAGGAAGAAGGATTAGATCTTCAGACAACTAAGAATGAAGACCATTTTGGCGCGCTCATTCATCACCTTGCATTAGTTCGCAACAAACGTTGCCTTATGGCTTATGTGCATAATCGAGCTGAGATTATAAGAAGTTTGATGTGGAAGGTAGTAGGTTCTATGATTCCACCGGAAATACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTCAAGAAGCATTCTGCCCGTCTTAAAGAATATATGTCAAAACTGGAGTTGGATTTGACTGTGGATATGGTGCCACCTAAGGATCCTTATATCCAAGTGAGAGTGCTCGACGATATCGGTGAAGGAATCGTTTTGAGTGATGATAAAACAGCAAACTTTGCACTTCATTCCATACATTTTCTTAAAAGAACTGATGCTGAACAATACATCTCACGGGGATTGATGGAGGAGCTTACAGGCTGA

Protein sequence

MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTTKNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEYFKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHFLKRTDAEQYISRGLMEELTG*

Homology

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BLAST of CsaV3_7G032580 vs. NCBI nr
Match: XP_004135842.1 (probable DNA replication complex GINS protein PSF1 [Cucumis sativus] >KGN45289.1 hypothetical protein Csa_016815 [Cucumis sativus])

HSP 1 Score: 400.6 bits (1028), Expect = 8.0e-108
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60
           MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT
Sbjct: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60

Query: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120
           KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISRGLMEELTG 201
           LKRTDAEQYISRGLMEELTG
Sbjct: 181 LKRTDAEQYISRGLMEELTG 200

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BLAST of CsaV3_7G032580 vs. NCBI nr
Match: XP_038897311.1 (probable DNA replication complex GINS protein PSF1 [Benincasa hispida])

HSP 1 Score: 393.7 bits (1010), Expect = 9.8e-106
Identity = 195/200 (97.50%), Postives = 198/200 (99.00%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60
           MYGRKACQLVKEL SGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT
Sbjct: 1   MYGRKACQLVKELTSGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60

Query: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120
           KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSL+WK+VGSMIPPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLIWKIVGSMIPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSAR+KEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARVKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISRGLMEELTG 201
           LKRTDAEQYISRGLMEEL G
Sbjct: 181 LKRTDAEQYISRGLMEELRG 200

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BLAST of CsaV3_7G032580 vs. NCBI nr
Match: XP_008461089.1 (PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis melo] >XP_008461091.1 PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis melo] >XP_008461092.1 PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis melo] >XP_008461093.1 PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis melo] >KAA0058768.1 putative DNA replication complex GINS protein PSF1 [Cucumis melo var. makuwa] >TYK10562.1 putative DNA replication complex GINS protein PSF1 [Cucumis melo var. makuwa])

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104
Identity = 194/200 (97.00%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60
           MYGRKACQLV ELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT
Sbjct: 1   MYGRKACQLVTELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60

Query: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120
           KNEDHFGALIHHLALVRNKRCLMAYVHNRAE IRSL+WK++GSMIPPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAETIRSLIWKLLGSMIPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISRGLMEELTG 201
           LKRTDAEQYISRGLMEEL G
Sbjct: 181 LKRTDAEQYISRGLMEELRG 200

[Close]

BLAST of CsaV3_7G032580 vs. NCBI nr
Match: XP_022964026.1 (probable DNA replication complex GINS protein PSF1 [Cucurbita moschata] >XP_023000395.1 probable DNA replication complex GINS protein PSF1 [Cucurbita maxima] >KAG6593434.1 DNA replication complex GINS protein PSF1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 382.9 bits (982), Expect = 1.7e-102
Identity = 187/200 (93.50%), Postives = 196/200 (98.00%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60
           MYGRKACQLVKELASGEKGQL  FNSDLFEQVISECQQHHLELQSL+RK+Q+EGLDLQTT
Sbjct: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60

Query: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120
           KNEDHFGAL+HHLALVRNKRCLMAYV+NRAE IRSL+WK+VGSM+PPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSK+ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISRGLMEELTG 201
           LKRTDAEQYISRGLMEEL G
Sbjct: 181 LKRTDAEQYISRGLMEELRG 200

[Close]

BLAST of CsaV3_7G032580 vs. NCBI nr
Match: XP_023514648.1 (probable DNA replication complex GINS protein PSF1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.2 bits (975), Expect = 1.1e-101
Identity = 186/200 (93.00%), Postives = 195/200 (97.50%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60
           MYGRKACQLVK LASGEKGQL  FNSDLFEQVISECQQHHLELQSL+RK+Q+EGLDLQTT
Sbjct: 1   MYGRKACQLVKVLASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60

Query: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120
           KNEDHFGAL+HHLALVRNKRCLMAYV+NRAE IRSL+WK+VGSM+PPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSK+ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISRGLMEELTG 201
           LKRTDAEQYISRGLMEEL G
Sbjct: 181 LKRTDAEQYISRGLMEELRG 200

[Close]

BLAST of CsaV3_7G032580 vs. ExPASy Swiss-Prot
Match: Q54HR6 (Probable DNA replication complex GINS protein PSF1 OS=Dictyostelium discoideum OX=44689 GN=gins1 PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 8.8e-25
Identity = 66/200 (33.00%), Postives = 115/200 (57.50%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60
           M+ + A +L+KEL   +   + H+N    +  I E    + +L   I + +E+       
Sbjct: 1   MFTKTAIELIKELRGTD--SIPHYNDTSIKATIDEMIALYEDLIKTITEHKEQ------- 60

Query: 61  KNEDHF--GALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEE 120
           K E  +   A+  H ++ R+KRC++AY++ R   I+   W    S++P +++E+LS +E 
Sbjct: 61  KKEPFYLQHAITFHNSINRDKRCILAYLNERLNRIKEYRWSSGQSLLPDQLKERLSQNEI 120

Query: 121 EYFKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSI 180
           ++F ++   L EY SK+ LDLT+D  PPK+ YI+VRV+ ++GE +VL+   T N  L++ 
Sbjct: 121 QFFSEYDKILTEYNSKVGLDLTIDPQPPKELYIEVRVIKELGE-VVLNSGCTVNLNLNTT 180

Query: 181 HFLKRTDAEQYISRGLMEEL 199
           HFLKR+D    +  G +E +
Sbjct: 181 HFLKRSDITNLVKNGSLEHI 190

[Close]

BLAST of CsaV3_7G032580 vs. ExPASy Swiss-Prot
Match: Q7ZT47 (DNA replication complex GINS protein PSF1 OS=Xenopus laevis OX=8355 GN=gins1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-23
Identity = 71/203 (34.98%), Postives = 110/203 (54.19%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEG-LDLQT 60
           M+  KA +L++EL     GQL  FN D   Q++ E +  + + Q+ + + + EG  DL  
Sbjct: 1   MFCEKAIELIRELQRASDGQLPAFNEDGIRQILEEMKALYEQNQADVNEAKTEGRSDLIP 60

Query: 61  TKNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEE 120
           T           H  L+RN+RC++AY+++R   IR+L W+  GS++P  ++  +S  E +
Sbjct: 61  T-------IKFRHCCLLRNRRCIVAYLYDRLLRIRALRWE-YGSVLPSALRFHMSTEEMD 120

Query: 121 YFKKHSARLKEYMSKL----ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFAL 180
           +F ++   L  YM  L     LD+T DM PPK  YI+VR L D GE   + D  T     
Sbjct: 121 WFNQYKRSLATYMRSLGGEEGLDITQDMKPPKSLYIEVRCLRDYGE-FEIDDGTTILLKK 180

Query: 181 HSIHFLKRTDAEQYISRGLMEEL 199
           +S HFL R   EQ I +G++E +
Sbjct: 181 NSQHFLPRWKCEQLIRQGVLEHV 194

[Close]

BLAST of CsaV3_7G032580 vs. ExPASy Swiss-Prot
Match: Q9CZ15 (DNA replication complex GINS protein PSF1 OS=Mus musculus OX=10090 GN=Gins1 PE=1 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.3e-23
Identity = 73/203 (35.96%), Postives = 109/203 (53.69%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGL-DLQT 60
           M+  KA +LV+EL    +GQL  FN D   QV+ E +  + + QS + + +  G  DL  
Sbjct: 1   MFCEKAMELVRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSAGRGDLIP 60

Query: 61  TKNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEE 120
           T           H AL+RN+RC +AY+++R   IR+L W+  GS++P  ++  +S  E E
Sbjct: 61  T-------VKFRHCALLRNRRCTIAYLYDRLLRIRALRWE-YGSVLPNSLRFHMSAEETE 120

Query: 121 YFKKHSARLKEYMSKL----ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFAL 180
           +F  +   L  YM  L     LD+T D+ PPK  YI+VR L D GE   + D  +     
Sbjct: 121 WFNHYKKSLATYMRSLGGDEGLDITQDVKPPKSLYIEVRCLKDYGE-FEVDDGTSVLLKK 180

Query: 181 HSIHFLKRTDAEQYISRGLMEEL 199
           +S HFL R   EQ I +G++E +
Sbjct: 181 NSQHFLPRWKCEQLIRQGVLEHV 194

[Close]

BLAST of CsaV3_7G032580 vs. ExPASy Swiss-Prot
Match: A4IFH4 (DNA replication complex GINS protein PSF1 OS=Bos taurus OX=9913 GN=GINS1 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-22
Identity = 71/203 (34.98%), Postives = 110/203 (54.19%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGL-DLQT 60
           M+  KA +LV+EL    +G+L  FN D   QV+ E +  + + QS + + +  G  DL  
Sbjct: 1   MFCEKAMELVRELHRAAEGRLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSSGRGDLIP 60

Query: 61  TKNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEE 120
           T           H +L+RN+RC +AY+++R   IR+L W+  GS++P  ++  +S  E +
Sbjct: 61  T-------IKFRHCSLLRNQRCTVAYLYDRLLRIRALRWE-YGSVLPSALRFHMSAEEMD 120

Query: 121 YFKKHSARLKEYMSKL----ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFAL 180
           +F ++   L  YM  L     LD+T DM PPK  YI+VR L D GE   + D  +     
Sbjct: 121 WFNRYKKSLATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGE-FEVEDGTSVLLKK 180

Query: 181 HSIHFLKRTDAEQYISRGLMEEL 199
           +S HFL R   EQ I +G++E +
Sbjct: 181 NSQHFLPRWKCEQLIRQGILEHV 194

[Close]

BLAST of CsaV3_7G032580 vs. ExPASy Swiss-Prot
Match: Q14691 (DNA replication complex GINS protein PSF1 OS=Homo sapiens OX=9606 GN=GINS1 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-22
Identity = 71/203 (34.98%), Postives = 109/203 (53.69%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEG-LDLQT 60
           M+  KA +L++EL    +GQL  FN D   QV+ E +  + + QS + + +  G  DL  
Sbjct: 1   MFCEKAMELIRELHRAPEGQLPAFNEDGLRQVLEEMKALYEQNQSDVNEAKSGGRSDLIP 60

Query: 61  TKNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEE 120
           T           H +L+RN+RC +AY+++R   IR+L W+  GS++P  ++  ++  E E
Sbjct: 61  T-------IKFRHCSLLRNRRCTVAYLYDRLLRIRALRWE-YGSVLPNALRFHMAAEEME 120

Query: 121 YFKKHSARLKEYMSKL----ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFAL 180
           +F  +   L  YM  L     LD+T DM PPK  YI+VR L D GE   + D  +     
Sbjct: 121 WFNNYKRSLATYMRSLGGDEGLDITQDMKPPKSLYIEVRCLKDYGE-FEVDDGTSVLLKK 180

Query: 181 HSIHFLKRTDAEQYISRGLMEEL 199
           +S HFL R   EQ I +G++E +
Sbjct: 181 NSQHFLPRWKCEQLIRQGVLEHI 194

[Close]

BLAST of CsaV3_7G032580 vs. ExPASy TrEMBL
Match: A0A0A0K8U8 (Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G433190 PE=3 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 3.9e-108
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60
           MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT
Sbjct: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60

Query: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120
           KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISRGLMEELTG 201
           LKRTDAEQYISRGLMEELTG
Sbjct: 181 LKRTDAEQYISRGLMEELTG 200

[Close]

BLAST of CsaV3_7G032580 vs. ExPASy TrEMBL
Match: A0A1S3CDY2 (probable DNA replication complex GINS protein PSF1 OS=Cucumis melo OX=3656 GN=LOC103499784 PE=3 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.2e-105
Identity = 194/200 (97.00%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60
           MYGRKACQLV ELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT
Sbjct: 1   MYGRKACQLVTELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60

Query: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120
           KNEDHFGALIHHLALVRNKRCLMAYVHNRAE IRSL+WK++GSMIPPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAETIRSLIWKLLGSMIPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISRGLMEELTG 201
           LKRTDAEQYISRGLMEEL G
Sbjct: 181 LKRTDAEQYISRGLMEELRG 200

[Close]

BLAST of CsaV3_7G032580 vs. ExPASy TrEMBL
Match: A0A5A7UU94 (Putative DNA replication complex GINS protein PSF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002160 PE=3 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.2e-105
Identity = 194/200 (97.00%), Postives = 197/200 (98.50%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60
           MYGRKACQLV ELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT
Sbjct: 1   MYGRKACQLVTELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60

Query: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120
           KNEDHFGALIHHLALVRNKRCLMAYVHNRAE IRSL+WK++GSMIPPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAETIRSLIWKLLGSMIPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISRGLMEELTG 201
           LKRTDAEQYISRGLMEEL G
Sbjct: 181 LKRTDAEQYISRGLMEELRG 200

[Close]

BLAST of CsaV3_7G032580 vs. ExPASy TrEMBL
Match: A0A6J1KI79 (probable DNA replication complex GINS protein PSF1 OS=Cucurbita maxima OX=3661 GN=LOC111494653 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 8.4e-103
Identity = 187/200 (93.50%), Postives = 196/200 (98.00%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60
           MYGRKACQLVKELASGEKGQL  FNSDLFEQVISECQQHHLELQSL+RK+Q+EGLDLQTT
Sbjct: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60

Query: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120
           KNEDHFGAL+HHLALVRNKRCLMAYV+NRAE IRSL+WK+VGSM+PPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSK+ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISRGLMEELTG 201
           LKRTDAEQYISRGLMEEL G
Sbjct: 181 LKRTDAEQYISRGLMEELRG 200

[Close]

BLAST of CsaV3_7G032580 vs. ExPASy TrEMBL
Match: A0A6J1HHQ1 (probable DNA replication complex GINS protein PSF1 OS=Cucurbita moschata OX=3662 GN=LOC111464174 PE=3 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 8.4e-103
Identity = 187/200 (93.50%), Postives = 196/200 (98.00%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60
           MYGRKACQLVKELASGEKGQL  FNSDLFEQVISECQQHHLELQSL+RK+Q+EGLDLQTT
Sbjct: 1   MYGRKACQLVKELASGEKGQLAQFNSDLFEQVISECQQHHLELQSLLRKIQDEGLDLQTT 60

Query: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSMIPPEIQEKLSNSEEEY 120
           KNEDHFGAL+HHLALVRNKRCLMAYV+NRAE IRSL+WK+VGSM+PPEIQEKLSNSEEEY
Sbjct: 61  KNEDHFGALVHHLALVRNKRCLMAYVYNRAETIRSLIWKIVGSMLPPEIQEKLSNSEEEY 120

Query: 121 FKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180
           FKKHSARLKEYMSK+ELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF
Sbjct: 121 FKKHSARLKEYMSKMELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSIHF 180

Query: 181 LKRTDAEQYISRGLMEELTG 201
           LKRTDAEQYISRGLMEEL G
Sbjct: 181 LKRTDAEQYISRGLMEELRG 200

[Close]

BLAST of CsaV3_7G032580 vs. TAIR 10
Match: AT1G80190.1 (partner of SLD five 1 )

HSP 1 Score: 280.0 bits (715), Expect = 1.5e-75
Identity = 138/202 (68.32%), Postives = 165/202 (81.68%), Query Frame = 0


Query: 1   MYGRKACQLVKELASGEKGQLTHFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTT 60
           MYGRK  QL+K+ A+GEKGQL  FNS LF++ I EC Q+H  +QSLIRK+Q+EGLD+Q  
Sbjct: 1   MYGRKGYQLIKDFATGEKGQLKPFNSKLFDETIEECDQNHHLIQSLIRKMQQEGLDVQNN 60

Query: 61  KNEDHFGALIHHLALVRNKRCLMAYVHNRAEIIRSLMWKVVGSM--IPPEIQEKLSNSEE 120
           +N DH+GALIHHLAL+RNKRCLMAYV+NRAEI+R L W+V   +  +P EIQEKL+  E+
Sbjct: 61  RNADHYGALIHHLALIRNKRCLMAYVYNRAEIVRDLAWRVGLELLDLPSEIQEKLTTLEK 120

Query: 121 EYFKKHSARLKEYMSKLELDLTVDMVPPKDPYIQVRVLDDIGEGIVLSDDKTANFALHSI 180
           EYFK HS  LK YM K+ ++L VDMVPPKDPYI+VR+LDDI EGIVLS DKT NFA HS+
Sbjct: 121 EYFKNHSVALKSYMGKVGIELNVDMVPPKDPYIKVRILDDIDEGIVLS-DKTTNFARHSM 180

Query: 181 HFLKRTDAEQYISRGLMEELTG 201
           HFLKRTDAE YI+RG MEELTG
Sbjct: 181 HFLKRTDAEPYIARGQMEELTG 201

The following BLAST results are available for this feature:

BLAST of CsaV3_7G032580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135842.1	8.0e-108	100.00	probable DNA replication complex GINS protein PSF1 [Cucumis sativus] >KGN45289.1...	[more]
XP_038897311.1	9.8e-106	97.50	probable DNA replication complex GINS protein PSF1 [Benincasa hispida]	[more]
XP_008461089.1	1.1e-104	97.00	PREDICTED: probable DNA replication complex GINS protein PSF1 [Cucumis melo] >XP...	[more]
XP_022964026.1	1.7e-102	93.50	probable DNA replication complex GINS protein PSF1 [Cucurbita moschata] >XP_0230...	[more]
XP_023514648.1	1.1e-101	93.00	probable DNA replication complex GINS protein PSF1 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_7G032580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54HR6	8.8e-25	33.00	Probable DNA replication complex GINS protein PSF1 OS=Dictyostelium discoideum O...	[more]
Q7ZT47	2.2e-23	34.98	DNA replication complex GINS protein PSF1 OS=Xenopus laevis OX=8355 GN=gins1 PE=...	[more]
Q9CZ15	8.3e-23	35.96	DNA replication complex GINS protein PSF1 OS=Mus musculus OX=10090 GN=Gins1 PE=1...	[more]
A4IFH4	2.4e-22	34.98	DNA replication complex GINS protein PSF1 OS=Bos taurus OX=9913 GN=GINS1 PE=2 SV...	[more]
Q14691	3.1e-22	34.98	DNA replication complex GINS protein PSF1 OS=Homo sapiens OX=9606 GN=GINS1 PE=1 ...	[more]

BLAST of CsaV3_7G032580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8U8	3.9e-108	100.00	Sld5 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G433190 PE=3 S...	[more]
A0A1S3CDY2	5.2e-105	97.00	probable DNA replication complex GINS protein PSF1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A5A7UU94	5.2e-105	97.00	Putative DNA replication complex GINS protein PSF1 OS=Cucumis melo var. makuwa O...	[more]
A0A6J1KI79	8.4e-103	93.50	probable DNA replication complex GINS protein PSF1 OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1HHQ1	8.4e-103	93.50	probable DNA replication complex GINS protein PSF1 OS=Cucurbita moschata OX=3662...	[more]

BLAST of CsaV3_7G032580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80190.1	1.5e-75	68.32	partner of SLD five 1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021151	GINS subunit, domain A	PFAM	PF05916	Sld5	coord: 48..117 e-value: 7.8E-7 score: 29.6
None	No IPR available	GENE3D	1.20.58.1030		coord: 1..135 e-value: 1.9E-39 score: 136.8
IPR005339	GINS complex, subunit Psf1	PANTHER	PTHR12914	PARTNER OF SLD5	coord: 1..196
IPR005339	GINS complex, subunit Psf1	CDD	cd11710	GINS_A_psf1	coord: 3..137 e-value: 2.94366E-47 score: 149.713
IPR036224	GINS, helical bundle-like domain superfamily	SUPERFAMILY	158573	GINS helical bundle-like	coord: 1..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G032580.1	CsaV3_7G032580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006260	DNA replication
cellular_component	GO:0000811	GINS complex