CsaV3_7G030100 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G030100
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Transcription factor UPBEAT1
Location	chr7: 19044062 .. 19045266 (+)
RNA-Seq Expression	CsaV3_7G030100
Synteny	CsaV3_7G030100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAATGGAGTATTATGCATCCAAGAAGCTATATATTAATGTAGTTATTATATTCATTTCAAAAGTTAAATGAAATAATATATCGTTTAATGACGTGTCAAATGTTGAATAAAAGGAATAGGTATTACTAATTTTTTCCCTATCATCTTATTTCTCTCCTTCTCTTTTCTTTTTATTTTTCAATTTTCCCCCAACTTATATTCTCTTTCCTCACCAAACCCATTTCACAAATTCCCCCATATAAAACCCCTCTAGCCTCCTCTACCTTCATCATCCAAAATCTCAATCCCAAACCCCATTTTCCCCTCTCTCTCTCTCTCTCTATTTCTCTAGTTTCTTCACCACAAGTGAAAAAGAAAAGAAAACCAAAAACCAAATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAGGATCATCAAACAACACAAGATCGTATCATCGACATCAAAGAGATCAGGAACAACAACTCAAATGATCAATCCACGTGGAAGAAAAATTCAATGAAAGAAGAAGAAGTTCAAGAAATTAATAGCAAAGGCAAAGACGACAAAAGCACTTGTAATATTAATACAAGAAGAACAACAAGAAGAAGATCAAGAAGCAATTCATTGATATTGAAGAAGAGATCAAGAAGATCATCATCATCATCATCAAGTAGAATAGAGCAAAGGGTCAACACTTTGAGAAGCCTTGTACCAAACAATGACAACCACAACCACGACGACCAGGATGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATACTGTCATTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGATCCTTCTTCTTCTATTGATGAGTGAGAGAATTTGAAAGGGAAAAAAAAAGTTTCATTTTATTTTTTGTTTTCATATATATATTTGTGTTTAATTTGTGTAAAACTTATATCATTATCTCTCTTCTGTAAAGATTGATATATGTGATTTTATATATATCATTCTTTTGCTTTTCTTTTCTTTTTTTGGTTCTTTTTCTCTTACCTTTTGCTTTATTGATCATTTGTCTTTGAAATGTCTCTGTAGTTTTAGAGAGAGAGATTTAACTTTGATTTTTTCTTCTTCTTTTGCTGTGTGGAAAAGATTTGACTTTTGTTTATAAGAAGTTATTTAGGGATATTGGGGTTAGCTA

mRNA sequence

ATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAGGATCATCAAACAACACAAGATCGTATCATCGACATCAAAGAGATCAGGAACAACAACTCAAATGATCAATCCACGTGGAAGAAAAATTCAATGAAAGAAGAAGAAGTTCAAGAAATTAATAGCAAAGGCAAAGACGACAAAAGCACTTGTAATATTAATACAAGAAGAACAACAAGAAGAAGATCAAGAAGCAATTCATTGATATTGAAGAAGAGATCAAGAAGATCATCATCATCATCATCAAGTAGAATAGAGCAAAGGGTCAACACTTTGAGAAGCCTTGTACCAAACAATGACAACCACAACCACGACGACCAGGATGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATACTGTCATTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGATCCTTCTTCTTCTATTGATGAGTGA

Coding sequence (CDS)

ATGGGAGTTTCCCAAGAAACCCTTTTGCAAATTCAACTCAACATGGAGGATCATCAAACAACACAAGATCGTATCATCGACATCAAAGAGATCAGGAACAACAACTCAAATGATCAATCCACGTGGAAGAAAAATTCAATGAAAGAAGAAGAAGTTCAAGAAATTAATAGCAAAGGCAAAGACGACAAAAGCACTTGTAATATTAATACAAGAAGAACAACAAGAAGAAGATCAAGAAGCAATTCATTGATATTGAAGAAGAGATCAAGAAGATCATCATCATCATCATCAAGTAGAATAGAGCAAAGGGTCAACACTTTGAGAAGCCTTGTACCAAACAATGACAACCACAACCACGACGACCAGGATGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATACTGTCATTACAAACAAGAGTCAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGATCCTTCTTCTTCTATTGATGAGTGA

Protein sequence

MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGKDDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHDDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE*

Homology

[Close]

BLAST of CsaV3_7G030100 vs. NCBI nr
Match: XP_031744332.1 (transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein Csa_016025 [Cucumis sativus])

HSP 1 Score: 303.5 bits (776), Expect = 1.1e-78
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60
           MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK
Sbjct: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60

Query: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120
           DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD
Sbjct: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120

Query: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 168
           DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE
Sbjct: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 167

[Close]

BLAST of CsaV3_7G030100 vs. NCBI nr
Match: KAA0046707.1 (transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa])

HSP 1 Score: 241.5 bits (615), Expect = 5.2e-60
Identity = 152/175 (86.86%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMK----EEEVQEIN 60
           MGVSQETLLQIQLNMEDH+TTQDRII IKEIRN++SNDQS WKK SMK    EEE QEIN
Sbjct: 1   MGVSQETLLQIQLNMEDHKTTQDRIIIIKEIRNDSSNDQSIWKKKSMKEEVGEEEDQEIN 60

Query: 61  SKGKDDKSTC-NINTRRTTRRRSRSNSLILKKRSRRSSSSSS--SRIEQRVNTLRSLVPN 120
           SKGK DKSTC NINTRRTTRRRSRSNSLILKKRSRRSSSSSS  SRIEQRVN LR+LVPN
Sbjct: 61  SKGK-DKSTCNNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVPN 120

Query: 121 NDNHNHDDQDESC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 168
           ND  NH D DESC  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE
Sbjct: 121 ND--NHQDDDESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 172

[Close]

BLAST of CsaV3_7G030100 vs. NCBI nr
Match: KAG6593250.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.2 bits (256), Expect = 2.2e-18
Identity = 78/163 (47.85%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60
           MGV  ETLL +QLNM++                  S D+++ ++   ++E+ ++  +  K
Sbjct: 1   MGVYPETLLLVQLNMKE-----------------PSQDETSMEEQQEQQEQQEQQEAIAK 60

Query: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120
                         RRR  SNSL+ K+RSR     SS+RIEQRV+TLR+LVPN +N+N++
Sbjct: 61  S-----------FNRRRRSSNSLMKKRRSR-----SSTRIEQRVSTLRNLVPNMNNNNNN 120

Query: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSS 164
              ESCVGSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Sbjct: 121 --HESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSN 128

[Close]

BLAST of CsaV3_7G030100 vs. NCBI nr
Match: KAG7025601.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.1 bits (253), Expect = 4.9e-18
Identity = 80/163 (49.08%), Postives = 101/163 (61.96%), Query Frame = 0


Query: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60
           MGV  ETLL +QLNM+  + +QD                    + SM+E++ ++  +  K
Sbjct: 1   MGVYPETLLLVQLNMK--EPSQD--------------------ETSMEEQQQEQQEAIAK 60

Query: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120
                         RRR  SNSL+ K+RSR     SS+RIEQRV+TLR+LVPN +N+N++
Sbjct: 61  S-----------FNRRRRSSNSLMKKRRSR-----SSTRIEQRVSTLRNLVPNMNNNNNN 120

Query: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSS 164
              ESCVGSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Sbjct: 121 --HESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSN 123

[Close]

BLAST of CsaV3_7G030100 vs. NCBI nr
Match: KAG6575752.1 (Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 7.9e-16
Identity = 82/165 (49.70%), Postives = 99/165 (60.00%), Query Frame = 0


Query: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60
           MG    TLL +QLNME  + TQD II           + S  KK+SM+EE+        K
Sbjct: 1   MGAFPNTLLLLQLNME--EPTQDIII-----------NGSILKKSSMEEEQ--------K 60

Query: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120
           ++KS           RR R  S  L K++RR    SS+RI QRV TLR+LVPN +N N +
Sbjct: 61  NNKSC----------RRRRRTSKSLAKKTRR----SSTRIVQRVTTLRNLVPNMNNDNDN 120

Query: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSI 166
           D ++   GSLEQLFT TADYILSLQTRVR M+TLVDVLS  SS I
Sbjct: 121 DNND---GSLEQLFTHTADYILSLQTRVRFMRTLVDVLSGSSSRI 127

[Close]

BLAST of CsaV3_7G030100 vs. ExPASy TrEMBL
Match: A0A0A0K6D9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.4e-79
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60
           MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK
Sbjct: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGK 60

Query: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120
           DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD
Sbjct: 61  DDKSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSRIEQRVNTLRSLVPNNDNHNHD 120

Query: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 168
           DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE
Sbjct: 121 DQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 167

[Close]

BLAST of CsaV3_7G030100 vs. ExPASy TrEMBL
Match: A0A5A7TXU1 (Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001830 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 2.5e-60
Identity = 152/175 (86.86%), Postives = 156/175 (89.14%), Query Frame = 0


Query: 1   MGVSQETLLQIQLNMEDHQTTQDRIIDIKEIRNNNSNDQSTWKKNSMK----EEEVQEIN 60
           MGVSQETLLQIQLNMEDH+TTQDRII IKEIRN++SNDQS WKK SMK    EEE QEIN
Sbjct: 1   MGVSQETLLQIQLNMEDHKTTQDRIIIIKEIRNDSSNDQSIWKKKSMKEEVGEEEDQEIN 60

Query: 61  SKGKDDKSTC-NINTRRTTRRRSRSNSLILKKRSRRSSSSSS--SRIEQRVNTLRSLVPN 120
           SKGK DKSTC NINTRRTTRRRSRSNSLILKKRSRRSSSSSS  SRIEQRVN LR+LVPN
Sbjct: 61  SKGK-DKSTCNNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSTSRIEQRVNILRNLVPN 120

Query: 121 NDNHNHDDQDESC-VGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 168
           ND  NH D DESC  GSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE
Sbjct: 121 ND--NHQDDDESCTAGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 172

[Close]

BLAST of CsaV3_7G030100 vs. ExPASy TrEMBL
Match: A0A1R3GQR1 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24243 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.8e-05
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 63  KSTCNINTRRTTRRRSRSNSLILKKRSRRSSSSSSSR------IEQRVNTLRSLVPNNDN 122
           K +C    R +   R R  S+++K+R R+++    SR      IE+++ TL+ L+PNND 
Sbjct: 22  KVSCRRKVRNSWSCRRRPRSIMMKRRPRQAADEEGSRRPMMNPIEKKIKTLKKLIPNND- 81

Query: 123 HNHDDQDESCVGSLEQLFTQTADYILSLQTRVRLMKTLVDVLSDPSSSIDE 168
                 DE     L+ LF +TADYILSLQ RV++M+ +V VL+  S S DE
Sbjct: 82  ------DELEPMGLDGLFRETADYILSLQMRVKVMQIMVKVLTG-SESDDE 124

[Close]

BLAST of CsaV3_7G030100 vs. ExPASy TrEMBL
Match: A0A251TGE3 (Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr10g0285031 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 52/147 (35.37%), Postives = 81/147 (55.10%), Query Frame = 0


Query: 18  HQTTQDRIIDIKEIRNNNSNDQSTWKKNSMKEEEVQEINSKGKDDKSTCNINTRRTTRRR 77
           HQT  D +++IK   NNNS+    WKK  + E + +     G+   S       R T  R
Sbjct: 7   HQTLGD-LLEIKSKCNNNSSRNLFWKK--LLEAQAKMAEKGGQKHHSHSATKKTRRTPTR 66

Query: 78  SRSNSLILKKRSRRSSSSSSSR---IEQRVNTLRSLVPNNDNHNHDDQDESCVGSLEQLF 137
           + +  +I ++R+RR+    S R   IE++V TL+ L+PN +         S VG L+ LF
Sbjct: 67  NNTLKMIKRRRARRAGQGGSRRSTMIEKKVRTLKKLIPNGN---------SSVG-LDGLF 126

Query: 138 TQTADYILSLQTRVRLMKTLVDVLSDP 162
           + TA+YI +LQ RV +M+ +V+ LS+P
Sbjct: 127 SDTAEYISNLQMRVSIMQAVVNALSNP 140

[Close]

BLAST of CsaV3_7G030100 vs. ExPASy TrEMBL
Match: A0A5B7BQN7 (BHLH domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_040590 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.7e-04
Identity = 34/84 (40.48%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 77  RSRSNSLILKKRSR-RSSSSSSSRIEQRVNTLRSLVPNNDNHNHDDQDESCVGSLEQLFT 136
           +SRS  +++K+R+R   S   ++RIE++V TL+ L+PN+++             L+ LF+
Sbjct: 61  KSRSRRILMKRRARLEGSRRPANRIERKVRTLKKLIPNSESM-----------GLDGLFS 120

Query: 137 QTADYILSLQTRVRLMKTLVDVLS 160
           +TADYIL+LQ RV++M+ +V+VLS
Sbjct: 121 ETADYILALQIRVKVMQIMVNVLS 133

The following BLAST results are available for this feature:

BLAST of CsaV3_7G030100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031744332.1	1.1e-78	100.00	transcription factor UPBEAT1 [Cucumis sativus] >KGN45028.1 hypothetical protein ...	[more]
KAA0046707.1	5.2e-60	86.86	transcription factor UPBEAT1 [Cucumis melo var. makuwa] >TYK18243.1 transcriptio...	[more]
KAG6593250.1	2.2e-18	47.85	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7025601.1	4.9e-18	49.08	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6575752.1	7.9e-16	49.70	Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CsaV3_7G030100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G030100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6D9	5.4e-79	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407810 PE=4 SV=1	[more]
A0A5A7TXU1	2.5e-60	86.86	Transcription factor UPBEAT1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1R3GQR1	8.8e-05	39.64	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_24243 PE=4 ...	[more]
A0A251TGE3	1.5e-04	35.37	Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=He...	[more]
A0A5B7BQN7	9.7e-04	40.48	BHLH domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_040590 PE=...	[more]

BLAST of CsaV3_7G030100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..103
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 12..160
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 12..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G030100.1	CsaV3_7G030100.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated