CsaV3_7G029690 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G029690
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptiontwo-component response regulator ARR11-like
Locationchr7: 18778083 .. 18778560 (+)
RNA-Seq ExpressionCsaV3_7G029690
SyntenyCsaV3_7G029690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGACGACCCTGGATTTTGTGGTGTGAATTGTTCTTGTGATTATCTTGTTCAATATCCCGATCATCAACCTTTGCATTTAGTTCCACACCATGTTGGCTGCTCTTCACACCCTGTTGTTACCTCCTCTTCAAACCCTGTTGTTGGATCCTCTTCAAACCATATTGTTGGCTCCTCTTCAAATCCTGTTGTTGGATCTTCTTCAAATCATATTGTTGACTCCTCTTCAAATCCTGTTGTTGGATCCTCTTCAAACCATGTTGTTGGCTCCTCTTCAAACCCTGTTGTTGACTCCTCTTCGTCCGGAATCGACGTCAATGGTCGTCGAGTTGGAAGAAAAGGTTCTTCAAAACCTAAAGCTTCAAAGAAGAAAAATGGTTACCATCATGTTCAAGGAGTGAGGAGACAACGACTCATTTGGACTACAGAACTCCATCAGTGTTTTGTTGAGATTTTTAATCGTACACCTTGCACAC

mRNA sequence

ATGGAAGACGACCCTGGATTTTGTGGTGTGAATTGTTCTTGTGATTATCTTGTTCAATATCCCGATCATCAACCTTTGCATTTAGTTCCACACCATGTTGGCTGCTCTTCACACCCTGTTGTTACCTCCTCTTCAAACCCTGTTGTTGGATCCTCTTCAAACCATATTGTTGGCTCCTCTTCAAATCCTGTTGTTGGATCTTCTTCAAATCATATTGTTGACTCCTCTTCAAATCCTGTTGTTGGATCCTCTTCAAACCATGTTGTTGGCTCCTCTTCAAACCCTGTTGTTGACTCCTCTTCGTCCGGAATCGACGTCAATGGTCGTCGAGTTGGAAGAAAAGGTTCTTCAAAACCTAAAGCTTCAAAGAAGAAAAATGGTTACCATCATGTTCAAGGAGTGAGGAGACAACGACTCATTTGGACTACAGAACTCCATCAGTGTTTTGTTGAGATTTTTAATCGTACACCTTGCACAC

Coding sequence (CDS)

ATGGAAGACGACCCTGGATTTTGTGGTGTGAATTGTTCTTGTGATTATCTTGTTCAATATCCCGATCATCAACCTTTGCATTTAGTTCCACACCATGTTGGCTGCTCTTCACACCCTGTTGTTACCTCCTCTTCAAACCCTGTTGTTGGATCCTCTTCAAACCATATTGTTGGCTCCTCTTCAAATCCTGTTGTTGGATCTTCTTCAAATCATATTGTTGACTCCTCTTCAAATCCTGTTGTTGGATCCTCTTCAAACCATGTTGTTGGCTCCTCTTCAAACCCTGTTGTTGACTCCTCTTCGTCCGGAATCGACGTCAATGGTCGTCGAGTTGGAAGAAAAGGTTCTTCAAAACCTAAAGCTTCAAAGAAGAAAAATGGTTACCATCATGTTCAAGGAGTGAGGAGACAACGACTCATTTGGACTACAGAACTCCATCAGTGTTTTGTTGAGATTTTTAATCGTACACCTTGCACAC

Protein sequence

MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSSSNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPKASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCTX
Homology
BLAST of CsaV3_7G029690 vs. NCBI nr
Match: KAE8646357.1 (hypothetical protein Csa_015615, partial [Cucumis sativus])

HSP 1 Score: 318.2 bits (814), Expect = 4.2e-83
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0

Query: 1   MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSS 60
           MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSS
Sbjct: 1   MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSS 60

Query: 61  SNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPK 120
           SNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPK
Sbjct: 61  SNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPK 120

Query: 121 ASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 160
           ASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT
Sbjct: 121 ASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 159

BLAST of CsaV3_7G029690 vs. NCBI nr
Match: XP_031745104.1 (probable serine/threonine-protein kinase cdc7 [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 2.7e-66
Identity = 135/144 (93.75%), Postives = 137/144 (95.14%), Query Frame = 0

Query: 1   MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSS 60
           MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSS
Sbjct: 1   MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSS 60

Query: 61  SNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPK 120
           SNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPK
Sbjct: 61  SNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPK 120

Query: 121 ASKKKNGYHHVQGVRRQRLIWTTE 145
           ASKKKNGYHHVQG+  +    T E
Sbjct: 121 ASKKKNGYHHVQGMSEKYPFVTRE 144

BLAST of CsaV3_7G029690 vs. NCBI nr
Match: KAA0046669.1 (hypothetical protein E6C27_scaffold427G00360 [Cucumis melo var. makuwa] >TYK18204.1 hypothetical protein E5676_scaffold411G001430 [Cucumis melo var. makuwa])

HSP 1 Score: 134.8 bits (338), Expect = 6.5e-28
Identity = 77/157 (49.04%), Postives = 85/157 (54.14%), Query Frame = 0

Query: 3   DDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSSSN 62
           +D GF GVN SCDYLVQ PDHQPL LVP+HVGCSSH                        
Sbjct: 2   EDTGFSGVNGSCDYLVQSPDHQPLQLVPYHVGCSSHS----------------------- 61

Query: 63  PVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPKAS 122
                                             V  SSSGI+++ RRVGRK SSKPKAS
Sbjct: 62  ----------------------------------VGCSSSGINLDRRRVGRKSSSKPKAS 101

Query: 123 KKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 160
           KKKNGYH  QG ++QRLIWT ELHQCFV+IFNRTP T
Sbjct: 122 KKKNGYHQPQGEKKQRLIWTPELHQCFVDIFNRTPST 101

BLAST of CsaV3_7G029690 vs. NCBI nr
Match: XP_016901048.1 (PREDICTED: uncharacterized protein LOC107991159 [Cucumis melo])

HSP 1 Score: 134.8 bits (338), Expect = 6.5e-28
Identity = 77/157 (49.04%), Postives = 85/157 (54.14%), Query Frame = 0

Query: 3   DDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSSSN 62
           +D GF GVN SCDYLVQ PDHQPL LVP+HVGCSSH                        
Sbjct: 2   EDTGFSGVNGSCDYLVQSPDHQPLQLVPYHVGCSSHS----------------------- 61

Query: 63  PVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPKAS 122
                                             V  SSSGI+++ RRVGRK SSKPKAS
Sbjct: 62  ----------------------------------VGCSSSGINLDRRRVGRKSSSKPKAS 101

Query: 123 KKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 160
           KKKNGYH  QG ++QRLIWT ELHQCFV+IFNRTP T
Sbjct: 122 KKKNGYHQPQGEKKQRLIWTPELHQCFVDIFNRTPST 101

BLAST of CsaV3_7G029690 vs. NCBI nr
Match: XP_038896348.1 (two-component response regulator ORR25-like [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 6.1e-10
Identity = 56/156 (35.90%), Postives = 72/156 (46.15%), Query Frame = 0

Query: 2   EDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSSS 61
           E + GF GV  SCDY+VQ P +Q L L+PH +G +S                        
Sbjct: 10  EREGGFGGVKGSCDYIVQSP-NQSLQLIPHPIGFNS------------------------ 69

Query: 62  NPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPKA 121
                                        +S+N      S+ ID    R+ +K SSKPKA
Sbjct: 70  ----------------------------STSANANSVQISTRIDDRRVRI-KKRSSKPKA 111

Query: 122 SKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTP 158
           SKKK+GYH  QG ++ RLIWT ELHQ F+EI NR+P
Sbjct: 130 SKKKDGYHQRQGAKKPRLIWTPELHQHFLEIHNRSP 111

BLAST of CsaV3_7G029690 vs. ExPASy TrEMBL
Match: A0A0A0K9E6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405930 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.0e-83
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0

Query: 1   MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSS 60
           MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSS
Sbjct: 1   MEDDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSS 60

Query: 61  SNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPK 120
           SNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPK
Sbjct: 61  SNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPK 120

Query: 121 ASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 160
           ASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT
Sbjct: 121 ASKKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 159

BLAST of CsaV3_7G029690 vs. ExPASy TrEMBL
Match: A0A5D3D3H7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001430 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.2e-28
Identity = 77/157 (49.04%), Postives = 85/157 (54.14%), Query Frame = 0

Query: 3   DDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSSSN 62
           +D GF GVN SCDYLVQ PDHQPL LVP+HVGCSSH                        
Sbjct: 2   EDTGFSGVNGSCDYLVQSPDHQPLQLVPYHVGCSSHS----------------------- 61

Query: 63  PVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPKAS 122
                                             V  SSSGI+++ RRVGRK SSKPKAS
Sbjct: 62  ----------------------------------VGCSSSGINLDRRRVGRKSSSKPKAS 101

Query: 123 KKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 160
           KKKNGYH  QG ++QRLIWT ELHQCFV+IFNRTP T
Sbjct: 122 KKKNGYHQPQGEKKQRLIWTPELHQCFVDIFNRTPST 101

BLAST of CsaV3_7G029690 vs. ExPASy TrEMBL
Match: A0A1S4DYK0 (uncharacterized protein LOC107991159 OS=Cucumis melo OX=3656 GN=LOC107991159 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 3.2e-28
Identity = 77/157 (49.04%), Postives = 85/157 (54.14%), Query Frame = 0

Query: 3   DDPGFCGVNCSCDYLVQYPDHQPLHLVPHHVGCSSHPVVTSSSNPVVGSSSNHIVGSSSN 62
           +D GF GVN SCDYLVQ PDHQPL LVP+HVGCSSH                        
Sbjct: 2   EDTGFSGVNGSCDYLVQSPDHQPLQLVPYHVGCSSHS----------------------- 61

Query: 63  PVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGRRVGRKGSSKPKAS 122
                                             V  SSSGI+++ RRVGRK SSKPKAS
Sbjct: 62  ----------------------------------VGCSSSGINLDRRRVGRKSSSKPKAS 101

Query: 123 KKKNGYHHVQGVRRQRLIWTTELHQCFVEIFNRTPCT 160
           KKKNGYH  QG ++QRLIWT ELHQCFV+IFNRTP T
Sbjct: 122 KKKNGYHQPQGEKKQRLIWTPELHQCFVDIFNRTPST 101

BLAST of CsaV3_7G029690 vs. ExPASy TrEMBL
Match: A0A0D2VG72 (Uncharacterized protein OS=Capsaspora owczarzaki (strain ATCC 30864) OX=595528 GN=CAOG_000428 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 9.0e-07
Identity = 49/93 (52.69%), Postives = 60/93 (64.52%), Query Frame = 0

Query: 33  VGCSSHPVVTSSSNPVVGSSSNHIVGSSSNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSS 92
           V  S+ PVV SS+ PVV SSS  +V SSS PVV SSS  +V+SSS PVV SSS  VV SS
Sbjct: 571 VESSTRPVVESSTRPVVESSSRPVVESSSRPVVESSSRPVVESSSRPVVESSSRPVVESS 630

Query: 93  SNPVVDSSSSGIDVNGRRVGRKGSSKPKASKKK 126
           S PVV+SSS  +  +  R   + SS+P  S  +
Sbjct: 631 SRPVVESSSRPVVESSSRPVVESSSRPIVSSSR 663

BLAST of CsaV3_7G029690 vs. ExPASy TrEMBL
Match: A0A6J1KVU3 (two-component response regulator ARR11-like OS=Cucurbita maxima OX=3661 GN=LOC111498058 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 47/111 (42.34%), Postives = 63/111 (56.76%), Query Frame = 0

Query: 57  VGSSSNPVVGSSSNHIVDSSSNPVVGSSSNHVVGSSSNPVVDSSSSGIDVNGR------- 116
           V S    V G  +++IV  ++       +   V    NPV    SSG DV+GR       
Sbjct: 23  VPSDGFDVHGGGADYIVQPTAPNQPSKDNPSFVSPDVNPVGVPHSSG-DVDGRVTILPVI 82

Query: 117 --RVGRKGSSKPKASKKKNGYHHVQ-GVRRQRLIWTTELHQCFVEIFNRTP 158
             R GRK S K K+SKKKNGY+H + G +++RLIWT ELHQCF+E +N+ P
Sbjct: 83  DDRTGRKTSLKAKSSKKKNGYYHRRNGEKKERLIWTPELHQCFLEYYNKFP 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646357.14.2e-83100.00hypothetical protein Csa_015615, partial [Cucumis sativus][more]
XP_031745104.12.7e-6693.75probable serine/threonine-protein kinase cdc7 [Cucumis sativus][more]
KAA0046669.16.5e-2849.04hypothetical protein E6C27_scaffold427G00360 [Cucumis melo var. makuwa] >TYK1820... [more]
XP_016901048.16.5e-2849.04PREDICTED: uncharacterized protein LOC107991159 [Cucumis melo][more]
XP_038896348.16.1e-1035.90two-component response regulator ORR25-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K9E62.0e-83100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G405930 PE=4 SV=1[more]
A0A5D3D3H73.2e-2849.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S4DYK03.2e-2849.04uncharacterized protein LOC107991159 OS=Cucumis melo OX=3656 GN=LOC107991159 PE=... [more]
A0A0D2VG729.0e-0752.69Uncharacterized protein OS=Capsaspora owczarzaki (strain ATCC 30864) OX=595528 G... [more]
A0A6J1KVU32.0e-0642.34two-component response regulator ARR11-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..131
NoneNo IPR availableSUPERFAMILY69349Phage fibre proteinscoord: 35..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G029690.1CsaV3_7G029690.1mRNA