CsaV3_7G029460 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G029460
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Exopolygalacturonase-like
Location	chr7: 18625226 .. 18626097 (-)
RNA-Seq Expression	CsaV3_7G029460
Synteny	CsaV3_7G029460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAAGAAATTTTAGCCTCATTCAAATCCTTCTGTTAGTATTTGCCTGGGAATGCTGTGCAAGGGCTGCTGCCATTTTCATTGACACCATCAACACTCAAATTCTTCTCAACGGGATTGTACCAAAGGTAAATGAGCAGTTTCTTCGTCCTGCAGAAGCACCCTGGCATCTTGGCTTCAGTACTCTTCCCAACATTGGCGGCGGCACGGTGAATGACATTAAGGTAAATGTTGATCTAAATGAGAATGGTGGGTTAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGACGGAGAGACTGATGATGCACAGGTGAGAGATATCAACACACACTAACTTCAAACCTTTTGATTTGAGTTAATTATCTTTAAATTGAAGACTATAGAAAATTGTATATATTTTTTGCTATTAAATTCTACCGTTATATTATTCTAAACTGATGTCAATTTTTCTTCTTTTTTTTTTTTTTTTTTGTGGATATGGATGGTACAATTATTTCAACATTTTTTGGAAAAAAAGAGTTATAATTATTTTTTTTATTTTCCATTTGGCAGGCATTCATGACAACATGGATTGCAGCTTGCCGGAACACAGTCGGTCCGGCGAAGTTCTTGATCCCACAAGACATATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCGTGCAAAAGCTTTCCAATCACTCTCGAAAATCAAGGAACTGTAAAGGCCACAACCGATATTAGTGCATATTCTTCTTCAGAATGGTTCTCTATTGAAGATGTTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCGTCTCCGTTTGGACCTATAATGACTGCATAAAAAACAACTTATGCCAACTTCTTCCAATC

mRNA sequence

ATGACAAGAAATTTTAGCCTCATTCAAATCCTTCTGTTAGTATTTGCCTGGGAATGCTGTGCAAGGGCTGCTGCCATTTTCATTGACACCATCAACACTCAAATTCTTCTCAACGGGATTGTACCAAAGGTAAATGAGCAGTTTCTTCGTCCTGCAGAAGCACCCTGGCATCTTGGCTTCAGTACTCTTCCCAACATTGGCGGCGGCACGGTGAATGACATTAAGGTAAATGTTGATCTAAATGAGAATGGTGGGTTAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGACGGAGAGACTGATGATGCACAGGCATTCATGACAACATGGATTGCAGCTTGCCGGAACACAGTCGGTCCGGCGAAGTTCTTGATCCCACAAGACATATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCGTGCAAAAGCTTTCCAATCACTCTCGAAAATCAAGGAACTGTAAAGGCCACAACCGATATTAGTGCATATTCTTCTTCAGAATGGTTCTCTATTGAAGATGTTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCGTCTCCGTTTGGACCTATAATGACTGCATAAAAAACAACTTATGCCAACTTCTTCCAATC

Coding sequence (CDS)

ATGACAAGAAATTTTAGCCTCATTCAAATCCTTCTGTTAGTATTTGCCTGGGAATGCTGTGCAAGGGCTGCTGCCATTTTCATTGACACCATCAACACTCAAATTCTTCTCAACGGGATTGTACCAAAGGTAAATGAGCAGTTTCTTCGTCCTGCAGAAGCACCCTGGCATCTTGGCTTCAGTACTCTTCCCAACATTGGCGGCGGCACGGTGAATGACATTAAGGTAAATGTTGATCTAAATGAGAATGGTGGGTTAGTTTTTGATGTTACAAAACATGGAGCTAAAGCTGACGGAGAGACTGATGATGCACAGGCATTCATGACAACATGGATTGCAGCTTGCCGGAACACAGTCGGTCCGGCGAAGTTCTTGATCCCACAAGACATATTTCTGGTGGGTCCGGTGACTTTCGCCGGTCCGTGCAAAAGCTTTCCAATCACTCTCGAAAATCAAGGAACTGTAAAGGCCACAACCGATATTAGTGCATATTCTTCTTCAGAATGGTTCTCTATTGAAGATGTTACTGGTTTCATCCTCACCGGCTCCGGCGTCTTTGACGGCCAAGGCGTCTCCGTTTGGACCTATAATGACTGCATAAAAAACAACTTATGCCAACTTCTTCCAATC

Protein sequence

MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGFSTLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVGPAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFILTGSGVFDGQGVSVWTYNDCIKNNLCQLLPI

Homology

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BLAST of CsaV3_7G029460 vs. NCBI nr
Match: XP_031745102.1 (exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 434.9 bits (1117), Expect = 4.0e-118
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60
           MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120
           STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180
           PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGVSVWTYNDCIKNNLCQLLPI 211
           TGSGVFDGQGVSVWTYNDCIKNNLCQLLPI
Sbjct: 181 TGSGVFDGQGVSVWTYNDCIKNNLCQLLPI 210

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BLAST of CsaV3_7G029460 vs. NCBI nr
Match: KAE8646348.1 (hypothetical protein Csa_016065, partial [Cucumis sativus])

HSP 1 Score: 434.9 bits (1117), Expect = 4.0e-118
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60
           MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120
           STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180
           PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGVSVWTYNDCIKNNLCQLLPI 211
           TGSGVFDGQGVSVWTYNDCIKNNLCQLLPI
Sbjct: 181 TGSGVFDGQGVSVWTYNDCIKNNLCQLLPI 210

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BLAST of CsaV3_7G029460 vs. NCBI nr
Match: KAE8646259.1 (hypothetical protein Csa_016100, partial [Cucumis sativus])

HSP 1 Score: 361.7 bits (927), Expect = 4.3e-96
Identity = 179/210 (85.24%), Postives = 186/210 (88.57%), Query Frame = 0


Query: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60
           MTRN SLIQILLLVFAW+CC   A +F D   TQ  L GIVP  NEQFLRPAEAP  LGF
Sbjct: 1   MTRNLSLIQILLLVFAWQCC---AVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGF 60

Query: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120
           STLPNI GGTVNDIK NVDLN+NGG VFDVTKHGAKA+G+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNI-GGTVNDIKANVDLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180
           PAKFLIPQ  FLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSS EWFSIED+TGFIL
Sbjct: 121 PAKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFIL 180

Query: 181 TGSGVFDGQGVSVWTYNDCIKNNLCQLLPI 211
           TGSGVFDGQG+SVW YNDC KNNLCQLLPI
Sbjct: 181 TGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 206

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BLAST of CsaV3_7G029460 vs. NCBI nr
Match: KAE8646258.1 (hypothetical protein Csa_015562 [Cucumis sativus])

HSP 1 Score: 361.7 bits (927), Expect = 4.3e-96
Identity = 179/210 (85.24%), Postives = 186/210 (88.57%), Query Frame = 0


Query: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60
           MTRN SLIQILLLVFAW+CC   A +F D   TQ  L GIVP  NEQFLRPAEAP  LGF
Sbjct: 1   MTRNLSLIQILLLVFAWQCC---AVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGF 60

Query: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120
           STLPNI GGTVNDIK NVDLN+NGG VFDVTKHGAKA+G+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNI-GGTVNDIKANVDLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180
           PAKFLIPQ  FLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSS EWFSIED+TGFIL
Sbjct: 121 PAKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFIL 180

Query: 181 TGSGVFDGQGVSVWTYNDCIKNNLCQLLPI 211
           TGSGVFDGQG+SVW YNDC KNNLCQLLPI
Sbjct: 181 TGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 206

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BLAST of CsaV3_7G029460 vs. NCBI nr
Match: XP_031745094.1 (exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 361.7 bits (927), Expect = 4.3e-96
Identity = 179/210 (85.24%), Postives = 186/210 (88.57%), Query Frame = 0


Query: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60
           MTRN SLIQILLLVFAW+CC   A +F D   TQ  L GIVP  NEQFLRPAEAP  LGF
Sbjct: 1   MTRNLSLIQILLLVFAWQCC---AVVFDDITGTQNRLKGIVPTTNEQFLRPAEAPRRLGF 60

Query: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120
           STLPNI GGTVNDIK NVDLN+NGG VFDVTKHGAKA+G+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNI-GGTVNDIKANVDLNQNGGSVFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180
           PAKFLIPQ  FLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSS EWFSIED+TGFIL
Sbjct: 121 PAKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFIL 180

Query: 181 TGSGVFDGQGVSVWTYNDCIKNNLCQLLPI 211
           TGSGVFDGQG+SVW YNDC KNNLCQLLPI
Sbjct: 181 TGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 206

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BLAST of CsaV3_7G029460 vs. ExPASy Swiss-Prot
Match: P49062 (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.1e-25
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 81  NENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVGPAKFLIPQDIFLVGPVTFAG 140
           N     V+D+TK GA  DG T+  +AF+ TWI  C + V PA  L+P+  FL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 141 PCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFILTGSGVFDGQGVSVWTYNDCI 200
           PCKS  +T+   GT+ ATT  S Y++ EWF  E V   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 201 KNNLCQLLP 210
           K   C L P
Sbjct: 165 KKVQCNLPP 169

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BLAST of CsaV3_7G029460 vs. ExPASy Swiss-Prot
Match: P35339 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 7.8e-24
Identity = 54/123 (43.90%), Postives = 73/123 (59.35%), Query Frame = 0


Query: 88  FDVTKHGAKADGETDDAQAFMTTWIAACRNTVGPAKFLIPQDIFLVGPVTFAGPCKSFPI 147
           FD+TK GA  +G+TD  +A    W +AC  T G    LIP+  FLVGP+ F GPCK   +
Sbjct: 41  FDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGPLNFTGPCKG-DV 100

Query: 148 TLENQGTVKATTDISAYSS-SEWFSIEDVTGFILTGSGVFDGQGVSVWTYNDCIKNNLCQ 207
           T++  G + ATTD+S Y     W  I  V   ++TG G  DGQG +VW+ N C+K   C+
Sbjct: 101 TIQVNGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGKLDGQGPAVWSKNSCVKKYDCK 160

Query: 208 LLP 210
           +LP
Sbjct: 161 ILP 161

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BLAST of CsaV3_7G029460 vs. ExPASy Swiss-Prot
Match: P26216 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-22
Identity = 56/134 (41.79%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 78  VDLNENG-GLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVGPAKFLIPQDIFLVGPV 137
           +D   +G G  FD+TK GA  +G+TD  +A    W +AC  T G    LIP+  FLVG +
Sbjct: 30  IDAKASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQL 89

Query: 138 TFAGPCKSFPITLENQGTVKATTDISAYSS-SEWFSIEDVTGFILTGSGVFDGQGVSVWT 197
            F GPCK   +T++  G + ATTD+S Y     W  I  V   ++TG G  DGQG +VW+
Sbjct: 90  NFTGPCKG-DVTIQVDGNLLATTDLSQYKDHGNWIEILRVDNLVITGKGNLDGQGPAVWS 149

Query: 198 YNDCIKNNLCQLLP 210
            N C K   C++LP
Sbjct: 150 KNSCTKKYDCKILP 161

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BLAST of CsaV3_7G029460 vs. ExPASy Swiss-Prot
Match: P35338 (Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-22
Identity = 56/134 (41.79%), Postives = 76/134 (56.72%), Query Frame = 0


Query: 78  VDLNENG-GLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVGPAKFLIPQDIFLVGPV 137
           +D   +G G  FD+TK GA  +G+TD  +A    W +AC  T G    LIP+  FLVG +
Sbjct: 30  IDAKASGPGGSFDITKLGASGNGKTDSTKAVQEAWASACGGT-GKQTILIPKGDFLVGQL 89

Query: 138 TFAGPCKSFPITLENQGTVKATTDISAYSS-SEWFSIEDVTGFILTGSGVFDGQGVSVWT 197
            F GPCK   +T++  G + ATTD+S Y     W  I  V   ++TG G  DGQG +VW+
Sbjct: 90  NFTGPCKG-DVTIQVDGNLLATTDLSQYKEHGNWIEILRVDNLVITGKGNLDGQGPAVWS 149

Query: 198 YNDCIKNNLCQLLP 210
            N C K   C++LP
Sbjct: 150 KNSCTKKYDCKILP 161

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BLAST of CsaV3_7G029460 vs. ExPASy Swiss-Prot
Match: Q6H9K0 (Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.4e-19
Identity = 50/125 (40.00%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 82  ENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVGPAKFLIPQDIFLVGPVTFAGP 141
           ++ G VF+V  +GAK  G  D +QA M  W AAC +  GP+  LIP+  + +G V   GP
Sbjct: 4   QSSGSVFNVNDYGAKGAG--DISQAVMKAWKAACASQ-GPSTVLIPKGNYNMGEVAMQGP 63

Query: 142 CKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFILTGSGVFDGQGVSVWTYNDCIK 201
           CK   I  +  G VKA  D S + S  W S   + G  ++G+G  DGQG + W  N+C K
Sbjct: 64  CKGSKIGFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDK 123

Query: 202 NNLCQ 207
           N  C+
Sbjct: 124 NPNCK 125

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BLAST of CsaV3_7G029460 vs. ExPASy TrEMBL
Match: A0A0A0K5I2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398220 PE=3 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 8.5e-106
Identity = 192/192 (100.00%), Postives = 192/192 (100.00%), Query Frame = 0


Query: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60
           MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF
Sbjct: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60

Query: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120
           STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG
Sbjct: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180
           PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL
Sbjct: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180

Query: 181 TGSGVFDGQGVS 193
           TGSGVFDGQGVS
Sbjct: 181 TGSGVFDGQGVS 192

[Close]

BLAST of CsaV3_7G029460 vs. ExPASy TrEMBL
Match: A0A0A0KAZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398720 PE=3 SV=1)

HSP 1 Score: 362.1 bits (928), Expect = 1.6e-96
Identity = 180/210 (85.71%), Postives = 185/210 (88.10%), Query Frame = 0


Query: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60
           MTRNFSLIQILLLVFA +CC   A IF D   TQ LL GIVPK N+QFLRPAE+P HLGF
Sbjct: 1   MTRNFSLIQILLLVFACQCC---AVIFDDVTGTQNLLKGIVPKANKQFLRPAESPRHLGF 60

Query: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120
           STLPNI GG VNDIK NVDLNENGG VFDVTKHGAK DGETDDA AFMTTWIAACRNTVG
Sbjct: 61  STLPNI-GGRVNDIKANVDLNENGGSVFDVTKHGAKGDGETDDAHAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180
           P KFLIPQ  FLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSS EWFSIED+TGFIL
Sbjct: 121 PTKFLIPQGTFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSPEWFSIEDITGFIL 180

Query: 181 TGSGVFDGQGVSVWTYNDCIKNNLCQLLPI 211
           TGSGVFDGQG+SVW YNDC KNNLCQLLPI
Sbjct: 181 TGSGVFDGQGLSVWPYNDCKKNNLCQLLPI 206

[Close]

BLAST of CsaV3_7G029460 vs. ExPASy TrEMBL
Match: A0A0A0K588 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G353000 PE=3 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 7.4e-94
Identity = 173/210 (82.38%), Postives = 184/210 (87.62%), Query Frame = 0


Query: 1   MTRNFSLIQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLGF 60
           MTRN SLIQILLLVFAW+CC   A +F D   TQ  L GIVP  NEQFLRP EAP  LGF
Sbjct: 1   MTRNLSLIQILLLVFAWQCC---AVVFYDITGTQNRLKGIVPTTNEQFLRPTEAPRRLGF 60

Query: 61  STLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVG 120
           +TL NI GGTVNDIK NVDLNENG  +FDVTKHGAKA+G+TDDAQAFMTTWIAACRNTVG
Sbjct: 61  NTLSNI-GGTVNDIKANVDLNENGVSIFDVTKHGAKANGKTDDAQAFMTTWIAACRNTVG 120

Query: 121 PAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFIL 180
           PAKFLIPQ  FLVGPVTFAGPCKSFPITLEN+GTVKATTDISAYSS EWFS+ED+TGFIL
Sbjct: 121 PAKFLIPQGTFLVGPVTFAGPCKSFPITLENEGTVKATTDISAYSSPEWFSVEDITGFIL 180

Query: 181 TGSGVFDGQGVSVWTYNDCIKNNLCQLLPI 211
           TGSGVFDGQG+SVW+YNDC KNNLCQLLPI
Sbjct: 181 TGSGVFDGQGLSVWSYNDCKKNNLCQLLPI 206

[Close]

BLAST of CsaV3_7G029460 vs. ExPASy TrEMBL
Match: A0A5A7U4W1 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00950 PE=3 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 1.0e-87
Identity = 168/211 (79.62%), Postives = 177/211 (83.89%), Query Frame = 0


Query: 1   MTRNFSL-IQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLG 60
           MTRN SL IQILLLVFA +C A+ AA   D   T+ LL   VP VNEQFLRPA AP  LG
Sbjct: 1   MTRNLSLVIQILLLVFASQCSAKVAATLDDVTGTENLLKVTVPTVNEQFLRPAGAPRRLG 60

Query: 61  FSTLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTV 120
             TLP+I G TVNDI+ N+ LNENGG VFDVTKHGAKADGETDDAQAFMTTWIAACRNTV
Sbjct: 61  IGTLPDI-GSTVNDIRANIVLNENGGSVFDVTKHGAKADGETDDAQAFMTTWIAACRNTV 120

Query: 121 GPAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFI 180
           GPAKFLIPQ  +LVGPVTFAGPCKSFPITLENQGTVKATTDIS YSS EWFSIED+TGFI
Sbjct: 121 GPAKFLIPQGTYLVGPVTFAGPCKSFPITLENQGTVKATTDISEYSSPEWFSIEDITGFI 180

Query: 181 LTGSGVFDGQGVSVWTYNDCIKNNLCQLLPI 211
           LTGSGVFDGQGV+VW YNDC KN  CQLLPI
Sbjct: 181 LTGSGVFDGQGVTVWPYNDCKKNRFCQLLPI 210

[Close]

BLAST of CsaV3_7G029460 vs. ExPASy TrEMBL
Match: A0A5A7TQ89 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36913G00010 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.8e-87
Identity = 168/211 (79.62%), Postives = 177/211 (83.89%), Query Frame = 0


Query: 1   MTRNFSL-IQILLLVFAWECCARAAAIFIDTINTQILLNGIVPKVNEQFLRPAEAPWHLG 60
           MTRN SL IQILLLVFA +C A+ AA   D   T+ LL   VP VNEQFLRPA AP  LG
Sbjct: 1   MTRNLSLVIQILLLVFASQCSAKDAATLDDVTGTENLLKVTVPTVNEQFLRPAGAPRRLG 60

Query: 61  FSTLPNIGGGTVNDIKVNVDLNENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTV 120
             TLP+I G TVNDI+ N+ LNENGG VFDVTKHGAKADGETDDAQAFMTTWIAACRNTV
Sbjct: 61  IGTLPDI-GSTVNDIRANIVLNENGGSVFDVTKHGAKADGETDDAQAFMTTWIAACRNTV 120

Query: 121 GPAKFLIPQDIFLVGPVTFAGPCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFI 180
           GPAKFLIPQ  +LVGPVTFAGPCKSFPITLENQGTVKATTDIS YSS EWFSIED+TGFI
Sbjct: 121 GPAKFLIPQGTYLVGPVTFAGPCKSFPITLENQGTVKATTDISEYSSPEWFSIEDITGFI 180

Query: 181 LTGSGVFDGQGVSVWTYNDCIKNNLCQLLPI 211
           LTGSGVFDGQGV+VW YNDC KN  CQLLPI
Sbjct: 181 LTGSGVFDGQGVTVWPYNDCKKNRFCQLLPI 210

[Close]

BLAST of CsaV3_7G029460 vs. TAIR 10
Match: AT1G02790.1 (polygalacturonase 4 )

HSP 1 Score: 116.3 bits (290), Expect = 2.9e-26
Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 81  NENGGLVFDVTKHGAKADGETDDAQAFMTTWIAACRNTVGPAKFLIPQDIFLVGPVTFAG 140
           N     V+D+TK GA  DG T+  +AF+ TWI  C + V PA  L+P+  FL GPV FAG
Sbjct: 45  NSGNPTVYDITKFGAVGDGSTNTFKAFLNTWIQVCDSPV-PATLLVPKGTFLAGPVIFAG 104

Query: 141 PCKSFPITLENQGTVKATTDISAYSSSEWFSIEDVTGFILTGSGVFDGQGVSVWTYNDCI 200
           PCKS  +T+   GT+ ATT  S Y++ EWF  E V   +LTG+G F G+G +VW  + C 
Sbjct: 105 PCKS-KVTVNVIGTIIATT--SGYATPEWFLFERVDNLVLTGTGTFHGKGEAVWKADGCG 164

Query: 201 KNNLCQLLP 210
           K   C L P
Sbjct: 165 KKVQCNLPP 169

[Close]

BLAST of CsaV3_7G029460 vs. TAIR 10
Match: AT2G15460.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-22
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 87  VFDVTKHGAKADGETDDAQAFMTTWIAACRNTVGPAKFLIPQDIFLVGPVTFAGPCKSFP 146
           VF+V +HGAK DG+TD+A AF + W  AC+   G +K  +P+  F +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 147 ITLENQGTVKATTDISAYSSSEWFSIEDVTGFILTGSGVFDGQGVSVWTYNDCIKNNLCQ 206
           I     GT+ A  + S      W +   +    ++GSG  DGQG   W +NDC  N  C 
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCP 149

Query: 207 LL 209
            L
Sbjct: 150 KL 150

[Close]

BLAST of CsaV3_7G029460 vs. TAIR 10
Match: AT2G15450.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 2.0e-22
Identity = 49/122 (40.16%), Postives = 67/122 (54.92%), Query Frame = 0


Query: 87  VFDVTKHGAKADGETDDAQAFMTTWIAACRNTVGPAKFLIPQDIFLVGPVTFAGPCKSFP 146
           VF+V +HGAK DG+TD+A AF + W  AC+   G +K  +P+  F +G V F GPCK+ P
Sbjct: 30  VFNVQRHGAKPDGKTDNANAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 147 ITLENQGTVKATTDISAYSSSEWFSIEDVTGFILTGSGVFDGQGVSVWTYNDCIKNNLCQ 206
           I     GT+ A  + S      W +   +    ++GSG  DGQG   W +NDC  N  C 
Sbjct: 90  IEFIIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPHNDCHTNPNCP 149

Query: 207 LL 209
            L
Sbjct: 150 KL 150

[Close]

BLAST of CsaV3_7G029460 vs. TAIR 10
Match: AT2G26620.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-22
Identity = 48/124 (38.71%), Postives = 67/124 (54.03%), Query Frame = 0


Query: 87  VFDVTKHGAKADGETDDAQAFMTTWIAACRNTVGPAKFLIPQDIFLVGPVTFAGPCKSFP 146
           VF+V +HG+K DG+TD+  AF + W  AC+   G +K  +P+  F +G V F GPCK+ P
Sbjct: 30  VFNVQRHGSKPDGKTDNTNAFTSIWSRACKRISGSSKIYVPKGTFYLGGVEFVGPCKN-P 89

Query: 147 ITLENQGTVKATTDISAYSSSEWFSIEDVTGFILTGSGVFDGQGVSVWTYNDCIKNNLCQ 206
           I     GT+ A  + +      W +   +    ++GSG  DGQG   W  NDC KN  C 
Sbjct: 90  IEFIIDGTLLAPANPNDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKNPNCP 149

Query: 207 LLPI 211
            L I
Sbjct: 150 KLAI 152

[Close]

BLAST of CsaV3_7G029460 vs. TAIR 10
Match: AT2G40310.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 5.7e-22
Identity = 48/121 (39.67%), Postives = 66/121 (54.55%), Query Frame = 0


Query: 88  FDVTKHGAKADGETDDAQAFMTTWIAACRNTVGPAKFLIPQDIFLVGPVTFAGPCKSFPI 147
           F+V +HG+K DG+TD+A  F + W  AC+   G +K  +P+ IF +G V F GPCK+ PI
Sbjct: 31  FNVQRHGSKPDGKTDNANVFTSIWSRACKRKSGSSKIYVPKGIFYLGGVEFVGPCKN-PI 90

Query: 148 TLENQGTVKATTDISAYSSSEWFSIEDVTGFILTGSGVFDGQGVSVWTYNDCIKNNLCQL 207
                GT+ A  + S      W +   +    ++GSG  DGQG   W  NDC KN  C  
Sbjct: 91  EFVIDGTLLAPANPSDIKQDTWINFRYINNLSISGSGTLDGQGKQSWPLNDCHKNLNCPK 150

Query: 208 L 209
           L
Sbjct: 151 L 150

The following BLAST results are available for this feature:

BLAST of CsaV3_7G029460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745102.1	4.0e-118	100.00	exopolygalacturonase-like [Cucumis sativus]	[more]
KAE8646348.1	4.0e-118	100.00	hypothetical protein Csa_016065, partial [Cucumis sativus]	[more]
KAE8646259.1	4.3e-96	85.24	hypothetical protein Csa_016100, partial [Cucumis sativus]	[more]
KAE8646258.1	4.3e-96	85.24	hypothetical protein Csa_015562 [Cucumis sativus]	[more]
XP_031745094.1	4.3e-96	85.24	exopolygalacturonase-like [Cucumis sativus]	[more]

BLAST of CsaV3_7G029460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49062	4.1e-25	46.51	Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 ...	[more]
P35339	7.8e-24	43.90	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG2C PE=2 SV=1	[more]
P26216	1.9e-22	41.79	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG1 PE=1 SV=1	[more]
P35338	1.9e-22	41.79	Exopolygalacturonase OS=Zea mays OX=4577 GN=PG9 PE=2 SV=1	[more]
Q6H9K0	4.4e-19	40.00	Exopolygalacturonase (Fragment) OS=Platanus acerifolia OX=140101 GN=plaa2 PE=1 S...	[more]

BLAST of CsaV3_7G029460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5I2	8.5e-106	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398220 PE=3 SV=1	[more]
A0A0A0KAZ2	1.6e-96	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398720 PE=3 SV=1	[more]
A0A0A0K588	7.4e-94	82.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G353000 PE=3 SV=1	[more]
A0A5A7U4W1	1.0e-87	79.62	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7TQ89	1.8e-87	79.62	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

BLAST of CsaV3_7G029460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02790.1	2.9e-26	46.51	polygalacturonase 4	[more]
AT2G15460.1	2.0e-22	40.16	Pectin lyase-like superfamily protein	[more]
AT2G15450.1	2.0e-22	40.16	Pectin lyase-like superfamily protein	[more]
AT2G26620.1	5.7e-22	38.71	Pectin lyase-like superfamily protein	[more]
AT2G40310.1	5.7e-22	39.67	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 119..209 e-value: 4.0E-12 score: 45.8
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 78..208 e-value: 1.9E-23 score: 85.1
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 1..204
None	No IPR available	PANTHER	PTHR31375:SF158	POLYGALACTURONASE	coord: 1..204
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 86..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G029460.1	CsaV3_7G029460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity