CsaV3_7G029440 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G029440
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic
Location	chr7: 18618880 .. 18620833 (-)
RNA-Seq Expression	CsaV3_7G029440
Synteny	CsaV3_7G029440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATTGATGATAAAGGGATAGCCTTCTCATTCTTTCTCCACCGGAGCTCCTCTGTGAAACCCATGGCTGCCACCGCCTGCTCCTCTCTCAGCTCCATTCGAGTAATAGGTTTTTTTCTTTCTCCTTGTTGATTCCAGTGCATTGAAATTGGATTTTCTCTTAGTTTTTTTTGCTTTATCCTTATAATTTAGGTATAGGATCATCCCCTTTGACTCCCAACCATGGAAATTCAAATTTCTGTGTATGTATTCACCTTCTATACCTTTCTATTACTTTCCCTGCTCCCGATTATGCTTTTACTCTTCCCTGAATGGAGGGTTCTGACTTGTTCAGTTGGATAAGGAATATTGCAATTAGATATTGAGACTTGAAAGGTTAAGTTGAGGTTAATATTGCAATTTTTGAAAGAATAGAGTAATGTTTGAAACAAAGGGCGAAGGGCGAACTTGAAAGGTTAAGTTGAGGTTAATATTGCAATTTTTGAAAGAATAGAGTAATGTTTGAAACAAAGGGCGAAGGGCGAACTTAAAGAGTATTTTTGATAATTTAACTGTTTAAATTTTGTTTTGAGTTTTTGGCATTAGGACCATGGTTATGTATGATTCTAGCCTAATGAGTTAGCTAAATAAGATAAATGATGGAGTGATGAAATAGACTTTTAGATTGACTTTTTTAAGTGCTTAAAAACAATTTTTTAAACATTTTAAGAAGTTAATTCGAACAAGCCTTTAGTTTAAGATGTATTCCATGTCAGTCACTCTGTCAAACATTTTTACATATCACTGTCCTATTCCCCAGTGTCGTGCATTTAACTATTGTTATATCATTGTAAATAGTGAGTAGAATCGCCTATATTTAAAATTACTTTCAAATAGTTAAAGCACCTAAAAAGTCATTCTAGACATGCACTTAGTTTGTGAATTGCATCCATTTGCAAAATGTTTAGATTTATTACCTTGTTTCGACAGAGAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTGCAAATTCCAAGCAATCAAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCCAAGAGTCTTCTGTCATTGGCCTATGTCATCCCTCCATTAAAGCCAGCTGCTGCTTACGAAGCTGCAAGGACTATCCCCTTTACCTTGCAAGATGCATCAATGGCTGCCTCTGATTTTGTGAACAGTATGACTTTGGCTGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGCTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCCTGTGGGGAAGTTTCCATATGTCATAGCTTATGCCCCCACTGAACCACTTCTAGTTGCAACAAGGAAGGTGATCCCTCCTCTCGGCGGAGTTGACGTAACACCAGTTGTCTGGTTCGGATTGATTAGTTTCCTCAATGAGATATTGCTCGGTCCCCAAGGGCTCCTTGTCCTCCTTTCTCAACAAGTCAGCTAAATCTTGATGAGAATGCTCAAGAGAAACATTCTTTTGTTTTTTAGTTCTGTATATGTAACTGTTCTTAGCTGAGCCTCTTTGGTTCCAAAAGGCAAAGAATTTGAAAACTTGAAATTCCTAATGAAGAAAATTTTCCTCATCCCAGAGAGTATAATCAGTTCAGCTTCAGATTAGTTTTGAGCTAAAACTGACTTGATCTTGTGTCGTTTTGAGAAGATTAAAATGTTGTTTAAAAATTTGATCTTTC

mRNA sequence

ATGGCTGCCACCGCCTGCTCCTCTCTCAGCTCCATTCGAGTAATAGGTATAGGATCATCCCCTTTGACTCCCAACCATGGAAATTCAAATTTCTGTAGAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTGCAAATTCCAAGCAATCAAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCCAAGAGTCTTCTGTCATTGGCCTATGTCATCCCTCCATTAAAGCCAGCTGCTGCTTACGAAGCTGCAAGGACTATCCCCTTTACCTTGCAAGATGCATCAATGGCTGCCTCTGATTTTGTGAACAGTATGACTTTGGCTGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGCTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCCTGTGGGGAAGTTTCCATATGTCATAGCTTATGCCCCCACTGAACCACTTCTAGTTGCAACAAGGAAGGTGATCCCTCCTCTCGGCGGAGTTGACGTAACACCAGTTGTCTGGTTCGGATTGATTAGTTTCCTCAATGAGATATTGCTCGGTCCCCAAGGGCTCCTTGTCCTCCTTTCTCAACAAGTCAGCTAA

Coding sequence (CDS)

ATGGCTGCCACCGCCTGCTCCTCTCTCAGCTCCATTCGAGTAATAGGTATAGGATCATCCCCTTTGACTCCCAACCATGGAAATTCAAATTTCTGTAGAGGCTTCAAGTACCATCCTCAAAGAAATCCAAACTGCAAATTCCAAGCAATCAAATGTAGCTCATCTTTGTTGGGTTCTTTTACCTCTTCCAAGAGTCTTCTGTCATTGGCCTATGTCATCCCTCCATTAAAGCCAGCTGCTGCTTACGAAGCTGCAAGGACTATCCCCTTTACCTTGCAAGATGCATCAATGGCTGCCTCTGATTTTGTGAACAGTATGACTTTGGCTGACCTCGACCCAGGAACGGCAAAGCTTGCGATCAGCTTTCTGGGGCCGTCTCTCTCGGTGTTTTCGTTTTTGTTTATTGCTAGAATAGTAATGTCTTGGTATCCCAAGTTGCCTGTGGGGAAGTTTCCATATGTCATAGCTTATGCCCCCACTGAACCACTTCTAGTTGCAACAAGGAAGGTGATCCCTCCTCTCGGCGGAGTTGACGTAACACCAGTTGTCTGGTTCGGATTGATTAGTTTCCTCAATGAGATATTGCTCGGTCCCCAAGGGCTCCTTGTCCTCCTTTCTCAACAAGTCAGCTAA

Protein sequence

MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVS*

Homology

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BLAST of CsaV3_7G029440 vs. NCBI nr
Match: XP_004136016.2 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Cucumis sativus] >KGN44957.1 hypothetical protein Csa_015527 [Cucumis sativus])

HSP 1 Score: 405.6 bits (1041), Expect = 2.6e-109
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF
Sbjct: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI
Sbjct: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
           SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT
Sbjct: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 211
           PVVWFGLISFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 210

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BLAST of CsaV3_7G029440 vs. NCBI nr
Match: XP_031745003.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 355.9 bits (912), Expect = 2.4e-94
Identity = 192/210 (91.43%), Postives = 192/210 (91.43%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLSSIRVI                  GFKYHPQRNPNCKFQAIKCSSSLLGSF
Sbjct: 1   MAATACSSLSSIRVI------------------GFKYHPQRNPNCKFQAIKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI
Sbjct: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
           SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT
Sbjct: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 211
           PVVWFGLISFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 192

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BLAST of CsaV3_7G029440 vs. NCBI nr
Match: XP_004136017.2 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 354.0 bits (907), Expect = 9.0e-94
Identity = 191/210 (90.95%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLSSIR                   RGFKYHPQRNPNCKFQAIKCSSSLLGSF
Sbjct: 1   MAATACSSLSSIR-------------------RGFKYHPQRNPNCKFQAIKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI
Sbjct: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
           SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT
Sbjct: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 211
           PVVWFGLISFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 191

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BLAST of CsaV3_7G029440 vs. NCBI nr
Match: KAG6575811.1 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014353.1 Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 351.3 bits (900), Expect = 5.9e-93
Identity = 180/210 (85.71%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLS+IRVIG+GSSPL PNHGNS+FCRGF YHPQ NPNC+FQA KCSSSLLGSF
Sbjct: 1   MAATACSSLSAIRVIGVGSSPLIPNHGNSSFCRGFNYHPQSNPNCRFQAFKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSK  L L Y  PPLKP     AARTIPF LQDAS+AASDF+N+++LADLDPGTAKLAI
Sbjct: 61  TSSKIHLPLVYATPPLKP-----AARTIPFALQDASVAASDFMNNVSLADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
            FLGP LS FSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDVT
Sbjct: 121 GFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 211
           PVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLVSFLNEILLGPQGLLVLLSQQVS 205

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BLAST of CsaV3_7G029440 vs. NCBI nr
Match: XP_023548987.1 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 350.1 bits (897), Expect = 1.3e-92
Identity = 180/210 (85.71%), Postives = 189/210 (90.00%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLS+IRVIG+GSSPL PNHGNS+FCRGF YHPQ NPNC+FQA KCSSSLLGSF
Sbjct: 1   MAATACSSLSAIRVIGVGSSPLIPNHGNSSFCRGFNYHPQSNPNCRFQAFKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSK  L L Y  PPLKP     AARTIPF LQDASMAASDF+N++ LADLDPGTAKLAI
Sbjct: 61  TSSKIHLPLVYATPPLKP-----AARTIPFALQDASMAASDFMNNVALADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
             LGP LS FSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDVT
Sbjct: 121 GLLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 211
           PVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLVSFLNEILLGPQGLLVLLSQQVS 205

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BLAST of CsaV3_7G029440 vs. ExPASy Swiss-Prot
Match: Q8RWM7 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CCB3 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 5.2e-44
Identity = 93/126 (73.81%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 83  EAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSW 142
           EAA T     Q  S+  S+ + +++LADLDPGTAKLAI  LGP+LS F FLFI RIVMSW
Sbjct: 48  EAATTTNLIRQTNSI--SESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSW 107

Query: 143 YPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLL 202
           YPKLPV KFPYV+AYAPTEP+LV TRKVIPPL GVDVTPVVWFGL+SFL+EIL+GPQGLL
Sbjct: 108 YPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLL 167

Query: 203 VLLSQQ 209
           VL+SQQ
Sbjct: 168 VLVSQQ 171

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BLAST of CsaV3_7G029440 vs. ExPASy TrEMBL
Match: A0A0A0K9A7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398190 PE=4 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 1.3e-109
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF
Sbjct: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI
Sbjct: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
           SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT
Sbjct: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 211
           PVVWFGLISFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 210

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BLAST of CsaV3_7G029440 vs. ExPASy TrEMBL
Match: A0A6J1JL88 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487957 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.9e-89
Identity = 177/210 (84.29%), Postives = 185/210 (88.10%), Query Frame = 0


Query: 1   MAATACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGSF 60
           MAATACSSLS+IRVIG+GSS L PNHGNS+ CRGF YHPQ NPNC+FQA KCSSSLLGSF
Sbjct: 1   MAATACSSLSAIRVIGVGSSLLIPNHGNSSLCRGFNYHPQSNPNCRFQAFKCSSSLLGSF 60

Query: 61  TSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAI 120
           TSSK  L L    P LKP     AARTIPF LQDASMAASDF N++ LADLDPGTAKLAI
Sbjct: 61  TSSKIPLPLVSATPLLKP-----AARTIPFALQDASMAASDFTNNVALADLDPGTAKLAI 120

Query: 121 SFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVT 180
            FLGP LS FSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDVT
Sbjct: 121 GFLGPFLSAFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDVT 180

Query: 181 PVVWFGLISFLNEILLGPQGLLVLLSQQVS 211
           PVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 PVVWFGLVSFLNEILLGPQGLLVLLSQQVS 205

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BLAST of CsaV3_7G029440 vs. ExPASy TrEMBL
Match: A0A1S3BSI7 (protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492796 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.2e-89
Identity = 185/211 (87.68%), Postives = 187/211 (88.63%), Query Frame = 0


Query: 1   MAAT-ACSSLSSIRVIGIGSSPLTPNHGNSNFCRGFKYHPQRNPNCKFQAIKCSSSLLGS 60
           MAAT ACSSLSSIR                   RGFKYHPQRNPN KFQAIKCSSSLLGS
Sbjct: 1   MAATAACSSLSSIR-------------------RGFKYHPQRNPNYKFQAIKCSSSLLGS 60

Query: 61  FTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLA 120
           FTSSK L SLAYVIPPLKPAAAYEAARTIPF LQDASMAASDFVNSMTLADLDPGTAKLA
Sbjct: 61  FTSSKILPSLAYVIPPLKPAAAYEAARTIPFALQDASMAASDFVNSMTLADLDPGTAKLA 120

Query: 121 ISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDV 180
           ISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLL+ATRKVIPPLGGVDV
Sbjct: 121 ISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLIATRKVIPPLGGVDV 180

Query: 181 TPVVWFGLISFLNEILLGPQGLLVLLSQQVS 211
           TPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 181 TPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 192

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BLAST of CsaV3_7G029440 vs. ExPASy TrEMBL
Match: A0A5A7VQJ0 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001630 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.4e-87
Identity = 172/178 (96.63%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 33  RGFKYHPQRNPNCKFQAIKCSSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTL 92
           RGFKYHPQRNPN KFQAIKCSSSLLGSFTSSK L SLAYVIPPLKPAAAYEAARTIPF L
Sbjct: 24  RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFAL 83

Query: 93  QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 152
           QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP
Sbjct: 84  QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 143

Query: 153 YVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVS 211
           YVIAYAPTEPLL+ATRKVIPPLGGVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 144 YVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 201

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BLAST of CsaV3_7G029440 vs. ExPASy TrEMBL
Match: A0A5D3D3A7 (Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00790 PE=4 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 4.0e-87
Identity = 171/178 (96.07%), Postives = 174/178 (97.75%), Query Frame = 0


Query: 33  RGFKYHPQRNPNCKFQAIKCSSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTL 92
           RGFKYHPQRNPN KFQAIKCSSSLLGSFTSSK L SLAYVIPPLKPAAAYEAARTIPF L
Sbjct: 24  RGFKYHPQRNPNYKFQAIKCSSSLLGSFTSSKILPSLAYVIPPLKPAAAYEAARTIPFAL 83

Query: 93  QDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 152
           +DASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP
Sbjct: 84  RDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSWYPKLPVGKFP 143

Query: 153 YVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLLVLLSQQVS 211
           YVIAYAPTEPLL+ATRKVIPPLGGVDVTPVVWFGL+SFLNEILLGPQGLLVLLSQQVS
Sbjct: 144 YVIAYAPTEPLLIATRKVIPPLGGVDVTPVVWFGLVSFLNEILLGPQGLLVLLSQQVS 201

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BLAST of CsaV3_7G029440 vs. TAIR 10
Match: AT5G36120.1 (cofactor assembly, complex C (B6F) )

HSP 1 Score: 179.1 bits (453), Expect = 3.7e-45
Identity = 93/126 (73.81%), Postives = 106/126 (84.13%), Query Frame = 0


Query: 83  EAARTIPFTLQDASMAASDFVNSMTLADLDPGTAKLAISFLGPSLSVFSFLFIARIVMSW 142
           EAA T     Q  S+  S+ + +++LADLDPGTAKLAI  LGP+LS F FLFI RIVMSW
Sbjct: 48  EAATTTNLIRQTNSI--SESLRNISLADLDPGTAKLAIGILGPALSAFGFLFILRIVMSW 107

Query: 143 YPKLPVGKFPYVIAYAPTEPLLVATRKVIPPLGGVDVTPVVWFGLISFLNEILLGPQGLL 202
           YPKLPV KFPYV+AYAPTEP+LV TRKVIPPL GVDVTPVVWFGL+SFL+EIL+GPQGLL
Sbjct: 108 YPKLPVDKFPYVLAYAPTEPILVQTRKVIPPLAGVDVTPVVWFGLVSFLSEILVGPQGLL 167

Query: 203 VLLSQQ 209
           VL+SQQ
Sbjct: 168 VLVSQQ 171

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BLAST of CsaV3_7G029440 vs. TAIR 10
Match: AT3G07430.1 (YGGT family protein )

HSP 1 Score: 45.1 bits (105), Expect = 8.4e-05
Identity = 40/156 (25.64%), Postives = 74/156 (47.44%), Query Frame = 0


Query: 53  SSSLLGSFTSSKSLLSLAYVIPPLKPAAAYEAARTIPFTLQDA---SMAASDFVNSMTLA 112
           SS+L GS  S  +L +LA  +  +       A +T    + D    S++ +  V   +L 
Sbjct: 77  SSTLTGSTRSLATLAALAIAVTRVLAQKLSLAIQTSSPVIADGLRFSLSTAGPVFFASLR 136

Query: 113 DLDPGTAKLAISFLGPS----LSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLV 172
           D  PG     ++ +       L ++S + + R+++SW+P +P  + P        +P L 
Sbjct: 137 DRPPGYLNTPLTVVAVGIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLN 196

Query: 173 ATRKVIPPL-GGVDVTPVVWFGLISFLNEILLGPQG 201
             R +IPP+   +DV+P++ F ++  L  I+ G  G
Sbjct: 197 LFRNIIPPIFDTLDVSPLLAFAVLGTLGSIVHGSTG 232

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BLAST of CsaV3_7G029440 vs. TAIR 10
Match: AT4G27990.1 (YGGT family protein )

HSP 1 Score: 42.4 bits (98), Expect = 5.4e-04
Identity = 22/75 (29.33%), Postives = 42/75 (56.00%), Query Frame = 0


Query: 127 LSVFSFLFIARIVMSWYPKLPVGKFPYVIAYAPTEPLLVATRKVIPPL-GGVDVTPVVWF 186
           L ++S + + R+++SW+P +P  + P        +P L   R +IPP+   +DV+P++ F
Sbjct: 144 LDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLAF 203

Query: 187 GLISFLNEILLGPQG 201
            ++  L  IL   +G
Sbjct: 204 AVLGTLGSILNNSRG 218

The following BLAST results are available for this feature:

BLAST of CsaV3_7G029440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136016.2	2.6e-109	100.00	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 ...	[more]
XP_031745003.1	2.4e-94	91.43	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X2 ...	[more]
XP_004136017.2	9.0e-94	90.95	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X3 ...	[more]
KAG6575811.1	5.9e-93	85.71	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic, partial [C...	[more]
XP_023548987.1	1.3e-92	85.71	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 ...	[more]

BLAST of CsaV3_7G029440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWM7	5.2e-44	73.81	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Arabidop...	[more]

BLAST of CsaV3_7G029440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9A7	1.3e-109	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398190 PE=4 SV=1	[more]
A0A6J1JL88	1.9e-89	84.29	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic isoform X1 ...	[more]
A0A1S3BSI7	4.2e-89	87.68	protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, chloroplastic OS=Cucumis ...	[more]
A0A5A7VQJ0	1.4e-87	96.63	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuw...	[more]
A0A5D3D3A7	4.0e-87	96.07	Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3 OS=Cucumis melo var. makuw...	[more]

BLAST of CsaV3_7G029440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G36120.1	3.7e-45	73.81	cofactor assembly, complex C (B6F)	[more]
AT3G07430.1	8.4e-05	25.64	YGGT family protein	[more]
AT4G27990.1	5.4e-04	29.33	YGGT family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003425	CCB3/YggT	PFAM	PF02325	YGGT	coord: 127..195 e-value: 6.0E-15 score: 55.4
IPR003425	CCB3/YggT	PANTHER	PTHR33219	YLMG HOMOLOG PROTEIN 2, CHLOROPLASTIC	coord: 12..209
None	No IPR available	PANTHER	PTHR33219:SF11	PROTEIN COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB3, CHLOROPLASTIC	coord: 12..209

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G029440.1	CsaV3_7G029440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane