CsaV3_7G029380 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G029380
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionKeratin, type I cytoskeletal 9-like
Locationchr7: 18599361 .. 18599895 (+)
RNA-Seq ExpressionCsaV3_7G029380
SyntenyCsaV3_7G029380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAACAGGTTTCAAGCTTTTCTATACCCTTTTCTTAGTGTTGGTCTGCTAATATTGTGCCAAGGTAGGTGCCACTAAAAACGTCGATGGCTTTTTCGACGACTATGATCGTGGGGGCGACTATGATGGATCATTTGGATCAGGTGGTGTTGGAGTTCTTACAGGCAAGAAAGATTGACACCACATCAGTTATAGAAACGACCAACCCTCCAGAATTGGCATCAAGTATTGCCCCCGTCAAGTTTGAAGTTCCAATTAATGCGGGTGACGAAGGTTTGGTGTTTGGTTTTGGAAAAATCAAGAACATTGGGAGTGAAGTTATTTATAAGGATCACGTAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTCTGGAATAAATAATGGAAAGATCAAAGATGGTGGTAAAAATGGTGTAAAGGAGCCAAGGGAGAATTGTTGGATACAATATCAAAATTGGGTTAATGAGCAATGACATTAAATTCACTAGTGATGGGAATCAAATCAGACATCATACCCTTTCTCATTAA

mRNA sequence

ATGGCTTTTTCGACGACTATGATCGTGGGGGCGACTATGATGGATCATTTGGATCAGGTGGTGTTGGAGTTCTTACAGGCAAGAAAGATTGACACCACATCAGTTATAGAAACGACCAACCCTCCAGAATTGGCATCAAGTATTGCCCCCGTCAAGTTTGAAGTTCCAATTAATGCGGGTGACGAAGGTTTGGTGTTTGGTTTTGGAAAAATCAAGAACATTGGGAGTGAAGTTATTTATAAGGATCACGTAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTCTGGAATAA

Coding sequence (CDS)

ATGGCTTTTTCGACGACTATGATCGTGGGGGCGACTATGATGGATCATTTGGATCAGGTGGTGTTGGAGTTCTTACAGGCAAGAAAGATTGACACCACATCAGTTATAGAAACGACCAACCCTCCAGAATTGGCATCAAGTATTGCCCCCGTCAAGTTTGAAGTTCCAATTAATGCGGGTGACGAAGGTTTGGTGTTTGGTTTTGGAAAAATCAAGAACATTGGGAGTGAAGTTATTTATAAGGATCACGTAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTCTGGAATAA

Protein sequence

MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAGDEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE*
Homology
[Close]
BLAST of CsaV3_7G029380 vs. NCBI nr
Match: KGN44951.1 (hypothetical protein Csa_015905 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 2.1e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG 60
          MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG
Sbjct: 1  MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG 60

Query: 61 DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE 99
          DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE
Sbjct: 61 DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE 98

[Close]
BLAST of CsaV3_7G029380 vs. NCBI nr
Match: KAA0067981.1 (keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 5.9e-11
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 0 

Query: 29  KIDTTSVIETTNPPELASSIAPVKFEVPINAGDEGLVFGFGKIKNIGSEVIYKDHVVNLK 88
           KI TT +++  NPP+L    AP+  +VPINAGDEG VFG GK KN   EV  KD  VNLK
Sbjct: 58  KIGTTLILDMINPPKL----APIGSKVPINAGDEGSVFGMGKTKNTEGEVESKDLEVNLK 117

Query: 89  NVGRIDVS 97
           NVGRIDVS
Sbjct: 118 NVGRIDVS 121

[Close]
BLAST of CsaV3_7G029380 vs. NCBI nr
Match: TYK18142.1 (keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 5.9e-11
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 0 

Query: 29  KIDTTSVIETTNPPELASSIAPVKFEVPINAGDEGLVFGFGKIKNIGSEVIYKDHVVNLK 88
           KI TT +++  NPP+L    AP+  +VPINAGDEG VFG GK KN   EV  KD  VNLK
Sbjct: 58  KIGTTLILDMINPPKL----APIGSKVPINAGDEGSVFGMGKTKNTEGEVESKDLEVNLK 117

Query: 89  NVGRIDVS 97
           NVGRIDVS
Sbjct: 118 NVGRIDVS 121

[Close]
BLAST of CsaV3_7G029380 vs. ExPASy TrEMBL
Match: A0A0A0KAY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398130 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.0e-45
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG 60
          MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG
Sbjct: 1  MAFSTTMIVGATMMDHLDQVVLEFLQARKIDTTSVIETTNPPELASSIAPVKFEVPINAG 60

Query: 61 DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE 99
          DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE
Sbjct: 61 DEGLVFGFGKIKNIGSEVIYKDHVVNLKNVGRIDVSLE 98

[Close]
BLAST of CsaV3_7G029380 vs. ExPASy TrEMBL
Match: A0A5A7VQT6 (Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001690 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 0 

Query: 29  KIDTTSVIETTNPPELASSIAPVKFEVPINAGDEGLVFGFGKIKNIGSEVIYKDHVVNLK 88
           KI TT +++  NPP+L    AP+  +VPINAGDEG VFG GK KN   EV  KD  VNLK
Sbjct: 58  KIGTTLILDMINPPKL----APIGSKVPINAGDEGSVFGMGKTKNTEGEVESKDLEVNLK 117

Query: 89  NVGRIDVS 97
           NVGRIDVS
Sbjct: 118 NVGRIDVS 121

[Close]
BLAST of CsaV3_7G029380 vs. ExPASy TrEMBL
Match: A0A5D3D2L0 (Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00730 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.8e-11
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 0 

Query: 29  KIDTTSVIETTNPPELASSIAPVKFEVPINAGDEGLVFGFGKIKNIGSEVIYKDHVVNLK 88
           KI TT +++  NPP+L    AP+  +VPINAGDEG VFG GK KN   EV  KD  VNLK
Sbjct: 58  KIGTTLILDMINPPKL----APIGSKVPINAGDEGSVFGMGKTKNTEGEVESKDLEVNLK 117

Query: 89  NVGRIDVS 97
           NVGRIDVS
Sbjct: 118 NVGRIDVS 121

The following BLAST results are available for this feature:
BLAST of CsaV3_7G029380 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44951.12.1e-45100.00hypothetical protein Csa_015905 [Cucumis sativus][more]
KAA0067981.15.9e-1161.76keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa][more]
TYK18142.15.9e-1161.76keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa][more]
BLAST of CsaV3_7G029380 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G029380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAY11.0e-45100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398130 PE=4 SV=1[more]
A0A5A7VQT62.8e-1161.76Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3D2L02.8e-1161.76Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of CsaV3_7G029380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G029380.1CsaV3_7G029380.1mRNA