CsaV3_7G029210 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G029210
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 18501135 .. 18501816 (-)
RNA-Seq Expression	CsaV3_7G029210
Synteny	CsaV3_7G029210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGGAAGTTCGAACTTACTTCTCAAGCCAAAGATGCCGACAAAGAAGTGTGAACGACGACGAGCTTGAACAGATGTAGTTGTATCTGGAATTATATAGTGACGGTCCTCAAGTATAACTAAGATGTCAATATGTCCTGTTAAAAATAAATAACATAAACGTTGAGAACAAAGTGCTCAAGAAAGTGATTCACTGATATCATCCCTTATCTAACCGATGTAAAACTTAACATATAGTATAAATAAATCAGCGTGACCTTTCAAACAAGGTCCACAAGAACAACACAACTGCTTGAATGCTTCAAATAAAAACTCCCCTAAAATAATCAGTAAAGAACAACTCAAAAACATATGCACAACTCTAGCATAAGAAACCACAATCAACATAAAGAAGAAAAAGGAAAAACCCATGCTTTTGTAGGATCCGCGACTTTAGAGACAACAGCAAAACAGAGAACATTCTAAAACATCTTCTGATGCTGATGCTGTCGACTCTGCCTATGAGTCAACTACCATCGCTAGCTTTGATGCTGCTGCCTCATCGCCGTTGCCGGAAGGATTTTCAGAACACCGTCTGTATGTTTGGGGATTGGAGAACCGGTTTATAGCAGGGGAGAAGGAGAACGCTGACACTTTTTTTAAGTTCAAGGAGAGTTTGTCCAGTGGCAGGTCGTGTTAG

mRNA sequence

ATGAGGAGGAAGTTCGAACTTACTTCTCAAGCCAAAGATGCCGACAAAGAAAGACAACAGCAAAACAGAGAACATTCTAAAACATCTTCTGATGCTGATGCTGTCGACTCTGCCTATGAGTCAACTACCATCGCTAGCTTTGATGCTGCTGCCTCATCGCCGTTGCCGGAAGGATTTTCAGAACACCGTCTGTATGTTTGGGGATTGGAGAACCGGTTTATAGCAGGGGAGAAGGAGAACGCTGACACTTTTTTTAAGTTCAAGGAGAGTTTGTCCAGTGGCAGGTCGTGTTAG

Coding sequence (CDS)

ATGAGGAGGAAGTTCGAACTTACTTCTCAAGCCAAAGATGCCGACAAAGAAAGACAACAGCAAAACAGAGAACATTCTAAAACATCTTCTGATGCTGATGCTGTCGACTCTGCCTATGAGTCAACTACCATCGCTAGCTTTGATGCTGCTGCCTCATCGCCGTTGCCGGAAGGATTTTCAGAACACCGTCTGTATGTTTGGGGATTGGAGAACCGGTTTATAGCAGGGGAGAAGGAGAACGCTGACACTTTTTTTAAGTTCAAGGAGAGTTTGTCCAGTGGCAGGTCGTGTTAG

Protein sequence

MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFSEHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC*

Homology

[Close]

BLAST of CsaV3_7G029210 vs. NCBI nr
Match: KGN44934.1 (hypothetical protein Csa_016772 [Cucumis sativus])

HSP 1 Score: 186.0 bits (471), Expect = 1.5e-43
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFS 60
          MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFS
Sbjct: 1  MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFS 60

Query: 61 EHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC 98
          EHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC
Sbjct: 61 EHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC 97

[Close]

BLAST of CsaV3_7G029210 vs. ExPASy TrEMBL
Match: A0A0A0K7S6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396490 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.3e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFS 60
          MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFS
Sbjct: 1  MRRKFELTSQAKDADKERQQQNREHSKTSSDADAVDSAYESTTIASFDAAASSPLPEGFS 60

Query: 61 EHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC 98
          EHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC
Sbjct: 61 EHRLYVWGLENRFIAGEKENADTFFKFKESLSSGRSC 97

The following BLAST results are available for this feature:

BLAST of CsaV3_7G029210 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44934.1	1.5e-43	100.00	hypothetical protein Csa_016772 [Cucumis sativus]	[more]

BLAST of CsaV3_7G029210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G029210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7S6	7.3e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G396490 PE=4 SV=1	[more]

BLAST of CsaV3_7G029210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G029210.1	CsaV3_7G029210.1	mRNA