CsaV3_7G028660 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G028660
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	R3H-assoc domain-containing protein
Location	chr7: 18142907 .. 18146891 (+)
RNA-Seq Expression	CsaV3_7G028660
Synteny	CsaV3_7G028660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAACAAAAATGGTTGAAGGTGGGCCGGGTCGGGTCGGGTCTCGAGGGTAGTTTTGACTTTTGACATATGAGGAATCGGTCTCGGTGGCGGTGTGCGGCGGAGAAAGACGTCGTCTTCTCGATCTCATCTGAAACAGAATATTCTTCCGAATCTAATCCTTCCCTCTGTTTCTCTTCCCAATTTCTAAGGCTCTGTTTCTTCCTTCTTTTTTCAATCCTTGGATTCGATTTTGCCCTAATTTTCCCATCTCCATCTCCCTCAACTTCATCTTTCGCCGATTCTCCCCTTTCCGTCTTCTCATCCAACCTCCAAAAATCACCTTCCCTACAAGATTTTCAATCCCATCCACAACAGGGGAAAACCACCGCTTGGGCTTCAATCGGATTCTTAGTTTTCCTCTCTAATCATGGCTTCCATTGATGTTCTTGAACGAGAAGGGAATCGTTTCCCCTTTTCCCCTCTTAACGATCCACTCAATGGTACTTCTTCATCTCTTTTGTTAATCGTATCTGCTGATTACATTTAATAATAATACCCATTTGAGTGATTTTGGTGTTTCTGTTATAAAATTTTGAAATTTTCTCTGGGATCTATATTTTGTTTTATTTCCACAGGTGATACGGATTCTCGGGGTATGTCAATCGAGAAGAAGATAGAATTCTTGGAGAGCTTGACTGGGAAGGTGGGGTGATTGTAAATGTTCGAAATTTTCTTTTTGGATCGTCACTCCATCTGGACTGCTCTGTGAACTGCTTGCTTAAGTTTCTTGTATTGATTGTAGTTCTATCAGTACGATGCTTTTGCAATGTGCTTTTGATAAAATGGAAGTTTAACATGGTTACCTGATGATGAATAGTTACAAAATATTTGGATTTTAATCTAGGTTTTTTGTTTTGTTCAATATCTCATATCATTGGCTTCATTTTGAAGGAAAACTAGTAACCGTCTGGTCATTTTTTCAGTTCTCATTTTTTCAATATTATTTGGAGTAGTTTTCATGTGGTAAGGTTATCTAACATTTACTATTTATTCTCGAATGGAAATTGGAATTACATTGTGAATAAAGGTGCATCTCAATGCCTAAATGGGTTACCTGAGTGAAACCAATGCCAACTCTCTTAATATATGAAGTGCCTAAGTGTTCATATTCCTATCATTTCTCCCAAAATTTTACTAAAAGGCTTCAGTTTAAGCAAACTAATTTTCCCCCAAGTTAAATCGATACTGCACTTTCCTATTTACCTTTTGACAATCTTTGTCCACAGAACTTCTCTTTTTTGTTAACTTTTAATTTTTCCCCCTACTCTTCTCAGGTTACCAATAGGAAGTCTCGCAGATGGTTAAACGATCGTCTTTTGATGGAACTTGTTCCTCGTTTGAATGCTGAGGAAATTAGAGGGCTGTTTGCTCCACCACCTTGGGGTGTGATACATCTAAAAACTGTCCTTTTCGTAATTTTTCAATCTTTGATGAGTGTTATTTCTGAGTAATATAGATGCTAGATGTTTTAGACGGTAGAGCCTTCTTGCTTTCATCATCTTGTGTTATGTTATGCTACATGGTTTGAGGTAAGACATCGAGCCCCATAACAATGTCTACGTGAAAAAGAATACGAGGGAAGAGAGTGGAGATTGCTTCTGTAATTAGTTAGTTTGGTGGTGGGGTGCAAAGGTCTGTAAGGGGAAACCCGGAAAAGAGTAAGGAAAGAGGAGTAATTAGGGTAAAGAGTGAAGAAGAAGAAGGGGGATTTGGTTTTTATTTATTTGAGAATAATGGTGTTTACTTTTTAGGATGATTGGATATGGGAAAGTGATCTAGACTATGATATCCAAACCTAGGAGTTTGCTTTGAATTTCTAGTTGATCGGTTATCAAACGTAGCATTAGTTAGAATTAGTAGCTTGTTTGATTTGTTTAGGATCACATATTCCAAGTCATATTGTTTTAAATTAATTCATTTTTGGTGTTATTATGGCCATGATCATTCTGTTTACGCAAGCTTTTCTTCGTCGCATCTAGTGGCTTGACTGTTAATTCTTAGAGGGAATGGCTATATCTGCTAATCTCTCCCATGTTAATGTTTACTGATCCTTTTACCCGAGCCTAGAAATTCCTCACACTGGTGAAAGGATTCATCATGGTTTGAGGTTAATTTGCAGGTGATGATGTACGGCCCACAACGTTCTCCATGACTAATGCAGAAGACTGGGACAAGTTCAGGAGTATTGACATGGATAAAGAGGTCTTTCTACTTTTTACTTTAATGTTACCATTTTCATTTTTAGAATTTCAAAACAGCAGACTGTTGCATAAATAATAGAATGGCAAAGCAGATCGTCTAATTTAAGAACTTAATCCAAATATGTTATTTTCTTGTTAGGCTAAGATCATTGGAGTCTTCGAGAACTCATCTGCTAAGAGAAAGGGTCATATTGATGCAGATAAAATGGCTTTCTTGAATGCTTGGCGTAGAATTGAATGTCGAACAAGGGAGGCTCTTCGCCGTAGTTTTCGTGTGGAGCTTGTTGAAGGTTATGAGGTATGAACGTGTACAATAATTCAGATTTGTTTCATTCATTTCATTTCTTAAACGTGGGTTAATTGCAAGTCTCAAATGTTTCTTTTCGCATTTACTGGATGATTAACATGGTAAGTTAAGCTTTTTCTCCATCACAAATCTGAATGTTAGTTGAAGAGTGGGAACTGCAATGCATCAATCAACTCAACTTATAACTTGCTAATAAGTTTCTTTTTATTCATCTTTTCAGGAGTGCATAAGATCTTTTATTTCAGACACTTGTAAAGAAGATGTCTTAATCATGCGAGTTCAAGATCCATTCCACAGATTATTGCTACATGGAGTTTGTGAGGTATTTCCTCCTGGTTGAATTTAAGGAAATAAACTGGCTCAATAATAAACTTCCAAATTTACACAAGCTGCTATTATATGGGTCAATACATTAAAGAACATACAAATTAAAATTTGGTAAGTCAAAATATCACTTTACTTTCGTGTTTTTTGGGTCTCATTCTATTTTAGTTCTTTTTACTTTTTTAGATATCTAGATTTACCACTGCAGTCGCTATAAATCCTAGTATTAGGCCTTACAGTTGGATTAAAGGTTTTTTTGTCAAACTTGGTAAGATAATAGTAACAATAATAATAATAGTTGTTAAGAGAATGTGACTATGGAAGGGAAACTAATAGATAATAGATGGGTTTGAGAATCGTTGCTGATAACTTAACACAGTGAACTAATTTCAAGATTTGTTCAAAGTATGAGTATTAAATTTGGACATTTAAAGACCTCAGACTGAAAGAAGAAAAAGTCCCAAACTATAAGGATCAAAACCAGTTGAATATATGAAATTCTTATCTTTCACAAGAATAGAGATGAATTGAAAAGCTTAAATATTGAAGACTAGATTACATTTAACTCGAATAACCTGTGTACTATTTGGCTGACTTCTTTTTACATCATTCGAATTGTTTTCTGGGTAGTTCTACAACTTGGACTCTGTGACCGTTCTCGAGTCGAAGAACAGTGGCTCTATGAAAATGACTCGGATAACAAGGAAGAAGAAGGCCATGGTTGAGGTCCCAAATATAACTCTGACCCATTTCCTTAAAATGTCCAAAGAAGGAACATGGTAGTTTCAATTGATTAGATGAAGAAACTTGATAGGACCTTATTATTGCATTGATGTTTGTGACAATAATATTAAAGATTCAATGTTAGGGTACATTATTTAGACTTTAGGTTCGACTGTACAGTTGTTGTTGCCATATATCCTGCTGCTGGACCAATGTGTACTGTAAATTATTCTCTCTTTCTCTTGTGGCACCAATTCATATCATTTGAACAAGGAAATGCCTTGCTTCCTTTATTCACAACACATTTCTTCCTTTTCTAAGTTTCATTGGATTATTGTGATGTTGATTGTCTGGTTGATCGATTATAGTTATGTGAAATTGTGGGCAA

mRNA sequence

ATGGCTTCCATTGATGTTCTTGAACGAGAAGGGAATCGTTTCCCCTTTTCCCCTCTTAACGATCCACTCAATGGTGATACGGATTCTCGGGGTATGTCAATCGAGAAGAAGATAGAATTCTTGGAGAGCTTGACTGGGAAGGTTACCAATAGGAAGTCTCGCAGATGGTTAAACGATCGTCTTTTGATGGAACTTGTTCCTCGTTTGAATGCTGAGGAAATTAGAGGGCTGTTTGCTCCACCACCTTGGGGTGATGATGTACGGCCCACAACGTTCTCCATGACTAATGCAGAAGACTGGGACAAGTTCAGGAGTATTGACATGGATAAAGAGGCTAAGATCATTGGAGTCTTCGAGAACTCATCTGCTAAGAGAAAGGGTCATATTGATGCAGATAAAATGGCTTTCTTGAATGCTTGGCGTAGAATTGAATGTCGAACAAGGGAGGCTCTTCGCCGTAGTTTTCGTGTGGAGCTTGTTGAAGGTTATGAGGAGTGCATAAGATCTTTTATTTCAGACACTTGTAAAGAAGATGTCTTAATCATGCGAGTTCAAGATCCATTCCACAGATTATTGCTACATGGAGTTTGTGAGTTCTACAACTTGGACTCTGTGACCGTTCTCGAGTCGAAGAACAGTGGCTCTATGAAAATGACTCGGATAACAAGGAAGAAGAAGGCCATGGTTGAGGTCCCAAATATAACTCTGACCCATTTCCTTAAAATGTCCAAAGAAGGAACATGGTAG

Coding sequence (CDS)

ATGGCTTCCATTGATGTTCTTGAACGAGAAGGGAATCGTTTCCCCTTTTCCCCTCTTAACGATCCACTCAATGGTGATACGGATTCTCGGGGTATGTCAATCGAGAAGAAGATAGAATTCTTGGAGAGCTTGACTGGGAAGGTTACCAATAGGAAGTCTCGCAGATGGTTAAACGATCGTCTTTTGATGGAACTTGTTCCTCGTTTGAATGCTGAGGAAATTAGAGGGCTGTTTGCTCCACCACCTTGGGGTGATGATGTACGGCCCACAACGTTCTCCATGACTAATGCAGAAGACTGGGACAAGTTCAGGAGTATTGACATGGATAAAGAGGCTAAGATCATTGGAGTCTTCGAGAACTCATCTGCTAAGAGAAAGGGTCATATTGATGCAGATAAAATGGCTTTCTTGAATGCTTGGCGTAGAATTGAATGTCGAACAAGGGAGGCTCTTCGCCGTAGTTTTCGTGTGGAGCTTGTTGAAGGTTATGAGGAGTGCATAAGATCTTTTATTTCAGACACTTGTAAAGAAGATGTCTTAATCATGCGAGTTCAAGATCCATTCCACAGATTATTGCTACATGGAGTTTGTGAGTTCTACAACTTGGACTCTGTGACCGTTCTCGAGTCGAAGAACAGTGGCTCTATGAAAATGACTCGGATAACAAGGAAGAAGAAGGCCATGGTTGAGGTCCCAAATATAACTCTGACCCATTTCCTTAAAATGTCCAAAGAAGGAACATGGTAG

Protein sequence

MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDRLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFENSSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVLIMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFLKMSKEGTW*

Homology

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BLAST of CsaV3_7G028660 vs. NCBI nr
Match: XP_011659335.1 (uncharacterized protein LOC101217014 isoform X2 [Cucumis sativus] >KGN44873.1 hypothetical protein Csa_016858 [Cucumis sativus])

HSP 1 Score: 507.7 bits (1306), Expect = 5.8e-140
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120

Query: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180
           SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL
Sbjct: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180

Query: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL 240
           IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL
Sbjct: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL 240

Query: 241 KMSKEGTW 249
           KMSKEGTW
Sbjct: 241 KMSKEGTW 248

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BLAST of CsaV3_7G028660 vs. NCBI nr
Match: XP_008451376.1 (PREDICTED: uncharacterized protein LOC103492685 [Cucumis melo])

HSP 1 Score: 482.3 bits (1240), Expect = 2.6e-132
Identity = 237/248 (95.56%), Postives = 239/248 (96.37%), Query Frame = 0


Query: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MAS DVL+RE N FPFS  NDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLKREANPFPFSLPNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120

Query: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180
           SS+KRKGHIDADKMAFLNAWRRIECRTREALRRSFR ELVEGYEE IRSFISDTCKEDVL
Sbjct: 121 SSSKRKGHIDADKMAFLNAWRRIECRTREALRRSFRAELVEGYEESIRSFISDTCKEDVL 180

Query: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL 240
           IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKN GS KMTRITRKKKAMVEVPNITLTHFL
Sbjct: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNKGSTKMTRITRKKKAMVEVPNITLTHFL 240

Query: 241 KMSKEGTW 249
           KMSKEGTW
Sbjct: 241 KMSKEGTW 248

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BLAST of CsaV3_7G028660 vs. NCBI nr
Match: XP_038896192.1 (R3H domain-containing protein 4 [Benincasa hispida])

HSP 1 Score: 464.2 bits (1193), Expect = 7.3e-127
Identity = 229/248 (92.34%), Postives = 236/248 (95.16%), Query Frame = 0


Query: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MAS DVL+RE NRF FSPLNDPLNGDTDSR MSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLKREANRFTFSPLNDPLNGDTDSRSMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNA DWDKFRSIDMDKEAKIIGVFEN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAGDWDKFRSIDMDKEAKIIGVFEN 120

Query: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180
           SSAKRKGHIDADKMAFLNAW RIECRTREALRRSF  EL+EG+EECIRSFIS+T K DVL
Sbjct: 121 SSAKRKGHIDADKMAFLNAWHRIECRTREALRRSFLPELIEGFEECIRSFISETGK-DVL 180

Query: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL 240
           ++RVQDPFHRLLLHGVCEFYNLDSVTV ESKN GS+KMTRITRKKKAMVEVPNITLTHFL
Sbjct: 181 MLRVQDPFHRLLLHGVCEFYNLDSVTVPESKNGGSIKMTRITRKKKAMVEVPNITLTHFL 240

Query: 241 KMSKEGTW 249
           KMSKEGTW
Sbjct: 241 KMSKEGTW 247

[Close]

BLAST of CsaV3_7G028660 vs. NCBI nr
Match: XP_023515083.1 (R3H domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 444.1 bits (1141), Expect = 7.8e-121
Identity = 216/248 (87.10%), Postives = 229/248 (92.34%), Query Frame = 0


Query: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MAS DVL +E NRF FSPL+DP+ GD +SRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAK+IGV EN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120

Query: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180
           SSA++KGHIDADKMAFLNAWRRIE RTREALRRSF   LVE +EECIRSFISD+  +DVL
Sbjct: 121 SSARKKGHIDADKMAFLNAWRRIESRTREALRRSFLPGLVESFEECIRSFISDSSNQDVL 180

Query: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL 240
            +RVQDPFHRLLLHGVCEFYNLDS TV ESK +GS KMTRITRKKKAMVE+PNITLTHFL
Sbjct: 181 TLRVQDPFHRLLLHGVCEFYNLDSATVPESKGAGSTKMTRITRKKKAMVEIPNITLTHFL 240

Query: 241 KMSKEGTW 249
           KMSKEGTW
Sbjct: 241 KMSKEGTW 248

[Close]

BLAST of CsaV3_7G028660 vs. NCBI nr
Match: XP_022960434.1 (R3H domain-containing protein 4-like [Cucurbita moschata] >KAG6593131.1 R3H domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 443.4 bits (1139), Expect = 1.3e-120
Identity = 216/248 (87.10%), Postives = 228/248 (91.94%), Query Frame = 0


Query: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MAS DVL +E NRF FSPL+DP+ GD +SRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAK+IGV EN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120

Query: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180
           SSA+R+GHIDADKMAFLNAWRRIE RTREALRRSF   LVE +EECIRSFISD+  +DVL
Sbjct: 121 SSARRRGHIDADKMAFLNAWRRIESRTREALRRSFLPGLVESFEECIRSFISDSSNQDVL 180

Query: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL 240
            +RVQDPFHRLLLHGVCEFYNLDS TV ESK SG  KMTRITRKKKAMVE+PNITLTHFL
Sbjct: 181 TLRVQDPFHRLLLHGVCEFYNLDSATVPESKGSGCTKMTRITRKKKAMVEIPNITLTHFL 240

Query: 241 KMSKEGTW 249
           KMSKEGTW
Sbjct: 241 KMSKEGTW 248

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BLAST of CsaV3_7G028660 vs. ExPASy Swiss-Prot
Match: Q2KIL7 (R3H domain-containing protein 4 OS=Bos taurus OX=9913 GN=R3HDM4 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 4.8e-04
Identity = 50/183 (27.32%), Postives = 83/183 (45.36%), Query Frame = 0


Query: 44  LTGKVTNRKS-RRWLNDRLLMELVPRLNAE--EIRGLFAPPPWGDDVRPTTFSMTNAEDW 103
           L  K   RKS +R  N + L+ L+    A      G  APP           + T  E W
Sbjct: 64  LVPKAKGRKSLQRLENTQYLLTLLETDGATPGPEDGDLAPPAAPGIFAEACSNETYVEIW 123

Query: 104 DKFRSIDMDKEAKIIGVFEN---SSAKRKGHIDADKM-----AFL--NAWRRIECRTREA 163
           + F +   +++ +++   E+   S A+R+G    +       A+     ++RI  R R  
Sbjct: 124 NDFMNRSGEEQERVLRYLEDEGKSKARRRGPTRGEDRRREDPAYTPRECFQRISRRLRAV 183

Query: 164 LRRS-FRVELVEGYEECIRSFISDTCKEDVLIMRVQDPFHRLLLHGVCEFYNLDSVTV-L 212
           L+RS   +E +E +EE +  F S    + V    + + F RLLLH +C++ +L S +  L
Sbjct: 184 LKRSRIPMETLETWEERLLRFFS-VSPQAVYTAMLDNSFERLLLHAICQYMDLISASADL 243

[Close]

BLAST of CsaV3_7G028660 vs. ExPASy TrEMBL
Match: A0A0A0K5V5 (R3H-assoc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G393440 PE=4 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 2.8e-140
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0


Query: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120

Query: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180
           SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL
Sbjct: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180

Query: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL 240
           IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL
Sbjct: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL 240

Query: 241 KMSKEGTW 249
           KMSKEGTW
Sbjct: 241 KMSKEGTW 248

[Close]

BLAST of CsaV3_7G028660 vs. ExPASy TrEMBL
Match: A0A1S3BS51 (uncharacterized protein LOC103492685 OS=Cucumis melo OX=3656 GN=LOC103492685 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 1.3e-132
Identity = 237/248 (95.56%), Postives = 239/248 (96.37%), Query Frame = 0


Query: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MAS DVL+RE N FPFS  NDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLKREANPFPFSLPNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120

Query: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180
           SS+KRKGHIDADKMAFLNAWRRIECRTREALRRSFR ELVEGYEE IRSFISDTCKEDVL
Sbjct: 121 SSSKRKGHIDADKMAFLNAWRRIECRTREALRRSFRAELVEGYEESIRSFISDTCKEDVL 180

Query: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL 240
           IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKN GS KMTRITRKKKAMVEVPNITLTHFL
Sbjct: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNKGSTKMTRITRKKKAMVEVPNITLTHFL 240

Query: 241 KMSKEGTW 249
           KMSKEGTW
Sbjct: 241 KMSKEGTW 248

[Close]

BLAST of CsaV3_7G028660 vs. ExPASy TrEMBL
Match: A0A6J1HB10 (R3H domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111461169 PE=4 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 6.5e-121
Identity = 216/248 (87.10%), Postives = 228/248 (91.94%), Query Frame = 0


Query: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MAS DVL +E NRF FSPL+DP+ GD +SRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAK+IGV EN
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLEN 120

Query: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180
           SSA+R+GHIDADKMAFLNAWRRIE RTREALRRSF   LVE +EECIRSFISD+  +DVL
Sbjct: 121 SSARRRGHIDADKMAFLNAWRRIESRTREALRRSFLPGLVESFEECIRSFISDSSNQDVL 180

Query: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL 240
            +RVQDPFHRLLLHGVCEFYNLDS TV ESK SG  KMTRITRKKKAMVE+PNITLTHFL
Sbjct: 181 TLRVQDPFHRLLLHGVCEFYNLDSATVPESKGSGCTKMTRITRKKKAMVEIPNITLTHFL 240

Query: 241 KMSKEGTW 249
           KMSKEGTW
Sbjct: 241 KMSKEGTW 248

[Close]

BLAST of CsaV3_7G028660 vs. ExPASy TrEMBL
Match: A0A6J1KSN3 (R3H domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111497870 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 2.5e-120
Identity = 215/248 (86.69%), Postives = 228/248 (91.94%), Query Frame = 0


Query: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MAS DVL +E NRF FSPL+DP+ GD +SRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLNQEQNRFTFSPLSDPIKGDENSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120
           LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAK+IGV +N
Sbjct: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKLIGVLDN 120

Query: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180
           SSA+RKGHI+ADKMAFLNAWRRIE RTREALRRSF   LVE +EECIRSFISD+  +DVL
Sbjct: 121 SSARRKGHINADKMAFLNAWRRIESRTREALRRSFLPGLVESFEECIRSFISDSSNQDVL 180

Query: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL 240
            +RVQDPFHRLLLHGVCEFYNLDS TV ESK SG  KMTRITRKKKAMVE+PNITLTHFL
Sbjct: 181 TLRVQDPFHRLLLHGVCEFYNLDSATVPESKGSGCTKMTRITRKKKAMVEIPNITLTHFL 240

Query: 241 KMSKEGTW 249
           KMSKEGTW
Sbjct: 241 KMSKEGTW 248

[Close]

BLAST of CsaV3_7G028660 vs. ExPASy TrEMBL
Match: A0A6J1DA21 (uncharacterized protein LOC111018421 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018421 PE=4 SV=1)

HSP 1 Score: 441.4 bits (1134), Expect = 2.5e-120
Identity = 218/248 (87.90%), Postives = 228/248 (91.94%), Query Frame = 0


Query: 1   MASIDVLEREGNRFPFSPLNDPLNGDTDSRGMSIEKKIEFLESLTGKVTNRKSRRWLNDR 60
           MAS DVL+R  NR  FSPL DP+ GD DSRGMSIEKKIEFLESL GKVTNRKSRRWLNDR
Sbjct: 1   MASTDVLKRVENRLTFSPLLDPIKGDADSRGMSIEKKIEFLESLAGKVTNRKSRRWLNDR 60

Query: 61  LLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFEN 120
           LLMELVPRLNAEE+RGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGV EN
Sbjct: 61  LLMELVPRLNAEEVRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVLEN 120

Query: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDVL 180
           SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSF  ELVEG+E CIRSFISDT K DVL
Sbjct: 121 SSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFLPELVEGFEGCIRSFISDTSK-DVL 180

Query: 181 IMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKAMVEVPNITLTHFL 240
            +RVQDPFHRLLLHGVCEFYNLDSVTV ESK  GS K+TRI+RKKKAMVE+P+ITL+HFL
Sbjct: 181 TLRVQDPFHRLLLHGVCEFYNLDSVTVPESKGGGSTKVTRISRKKKAMVEIPSITLSHFL 240

Query: 241 KMSKEGTW 249
           KMSKEGTW
Sbjct: 241 KMSKEGTW 247

[Close]

BLAST of CsaV3_7G028660 vs. TAIR 10
Match: AT1G03250.1 (unknown protein; Has 89 Blast hits to 89 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 308.1 bits (788), Expect = 6.3e-84
Identity = 155/250 (62.00%), Postives = 189/250 (75.60%), Query Frame = 0


Query: 1   MASIDVLEREGNRFPFSPLNDPLNGDTD-SRGMSIEKKIEFLESLTGKVTNRKSRRWLND 60
           MA+ +V+ R+      S L DP  GDT  SRG+S+EKKIE LESL G+V+NR+SRRWLND
Sbjct: 1   MAATNVMRRDE-----SLLIDPQRGDTSVSRGLSLEKKIEALESLAGQVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKEAKIIGVFE 120
           R+LMELVPRL+A+EIRGLFAPPPWGDDV P+ FS+TN  +WDKFR+IDMDKEA I+    
Sbjct: 61  RILMELVPRLDAQEIRGLFAPPPWGDDVPPSAFSLTNVGEWDKFRNIDMDKEANIMDSLN 120

Query: 121 NSSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISDTCKEDV 180
            SS ++KG +D DK+A LNAWRRI+CRTR+ALRRSF  EL+EGYE CI  FI +  + DV
Sbjct: 121 RSSVRQKGSVDGDKIAVLNAWRRIDCRTRDALRRSFLPELIEGYESCISHFIEEGGEGDV 180

Query: 181 LIMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKA-MVEVPNITLTH 240
           L ++VQDPFHRLLLHGVCE++NL S T  E     +MK T I  KK     E P+I+L H
Sbjct: 181 LELKVQDPFHRLLLHGVCEYHNLVSTTATEQIGRIAMKTTSIKWKKSGDSGEKPSISLAH 240

Query: 241 FLKMSKEGTW 249
           FL+MSKEG W
Sbjct: 241 FLRMSKEGAW 245

[Close]

BLAST of CsaV3_7G028660 vs. TAIR 10
Match: AT1G03250.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages. )

HSP 1 Score: 301.6 bits (771), Expect = 5.9e-82
Identity = 155/256 (60.55%), Postives = 189/256 (73.83%), Query Frame = 0


Query: 1   MASIDVLEREGNRFPFSPLNDPLNGDTD-SRGMSIEKKIEFLESLTGKVTNRKSRRWLND 60
           MA+ +V+ R+      S L DP  GDT  SRG+S+EKKIE LESL G+V+NR+SRRWLND
Sbjct: 1   MAATNVMRRDE-----SLLIDPQRGDTSVSRGLSLEKKIEALESLAGQVSNRRSRRWLND 60

Query: 61  RLLMELVPRLNAEEIRGLFAPPPWGDDVRPTTFSMTNAEDWDKFRSIDMDKE------AK 120
           R+LMELVPRL+A+EIRGLFAPPPWGDDV P+ FS+TN  +WDKFR+IDMDKE      A 
Sbjct: 61  RILMELVPRLDAQEIRGLFAPPPWGDDVPPSAFSLTNVGEWDKFRNIDMDKEELCFFQAN 120

Query: 121 IIGVFENSSAKRKGHIDADKMAFLNAWRRIECRTREALRRSFRVELVEGYEECIRSFISD 180
           I+     SS ++KG +D DK+A LNAWRRI+CRTR+ALRRSF  EL+EGYE CI  FI +
Sbjct: 121 IMDSLNRSSVRQKGSVDGDKIAVLNAWRRIDCRTRDALRRSFLPELIEGYESCISHFIEE 180

Query: 181 TCKEDVLIMRVQDPFHRLLLHGVCEFYNLDSVTVLESKNSGSMKMTRITRKKKA-MVEVP 240
             + DVL ++VQDPFHRLLLHGVCE++NL S T  E     +MK T I  KK     E P
Sbjct: 181 GGEGDVLELKVQDPFHRLLLHGVCEYHNLVSTTATEQIGRIAMKTTSIKWKKSGDSGEKP 240

Query: 241 NITLTHFLKMSKEGTW 249
           +I+L HFL+MSKEG W
Sbjct: 241 SISLAHFLRMSKEGAW 251

The following BLAST results are available for this feature:

BLAST of CsaV3_7G028660 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011659335.1	5.8e-140	100.00	uncharacterized protein LOC101217014 isoform X2 [Cucumis sativus] >KGN44873.1 hy...	[more]
XP_008451376.1	2.6e-132	95.56	PREDICTED: uncharacterized protein LOC103492685 [Cucumis melo]	[more]
XP_038896192.1	7.3e-127	92.34	R3H domain-containing protein 4 [Benincasa hispida]	[more]
XP_023515083.1	7.8e-121	87.10	R3H domain-containing protein 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960434.1	1.3e-120	87.10	R3H domain-containing protein 4-like [Cucurbita moschata] >KAG6593131.1 R3H doma...	[more]

BLAST of CsaV3_7G028660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2KIL7	4.8e-04	27.32	R3H domain-containing protein 4 OS=Bos taurus OX=9913 GN=R3HDM4 PE=2 SV=1	[more]

BLAST of CsaV3_7G028660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5V5	2.8e-140	100.00	R3H-assoc domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G393440 P...	[more]
A0A1S3BS51	1.3e-132	95.56	uncharacterized protein LOC103492685 OS=Cucumis melo OX=3656 GN=LOC103492685 PE=...	[more]
A0A6J1HB10	6.5e-121	87.10	R3H domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114611...	[more]
A0A6J1KSN3	2.5e-120	86.69	R3H domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111497870...	[more]
A0A6J1DA21	2.5e-120	87.90	uncharacterized protein LOC111018421 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of CsaV3_7G028660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03250.1	6.3e-84	62.00	unknown protein; Has 89 Blast hits to 89 proteins in 31 species: Archae - 0; Bac...	[more]
AT1G03250.2	5.9e-82	60.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025952	R3H-associated N-terminal domain	PFAM	PF13902	R3H-assoc	coord: 33..153 e-value: 2.4E-28 score: 99.2
IPR036867	R3H domain superfamily	GENE3D	3.30.1370.50		coord: 148..247 e-value: 5.8E-6 score: 28.0
IPR036867	R3H domain superfamily	SUPERFAMILY	82708	R3H domain	coord: 140..238
IPR039629	R3H domain-containing protein 4	PANTHER	PTHR32019	R3H DOMAIN-CONTAINING PROTEIN 4	coord: 8..245

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G028660.1	CsaV3_7G028660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding