CsaV3_7G026260 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G026260
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 15749965 .. 15751643 (+)
RNA-Seq ExpressionCsaV3_7G026260
SyntenyCsaV3_7G026260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGAAATTCTAGATGAAGAGCAAATTCTACCTCTTCAAGGGGCAATCGCCCATCTTCTTCTTCTAATTCTGCACCCTCACCAATGAGTGCAGATCAATATGCCATGGATTTAGGGTTTACCACAGTAACCCGATCCAGAGCAAGATCATCTCGCATACAGATTGGATCTCCCACGAAGTCATCAACTCCACCAAGGACTTCGGCCAATCTCATTCGTCCTTCAAGTGAAGTCGTTCAGATGAGGCCTCTTGCCTCTCCTTTATCTAATAGGGAGTCTTCTACTCCTCCTACTACTTATTCTCAAGTTATCACTCCTGATAAAAGATTTGTACCTAGACTCGAAATCAAATCTTATTTTCAAAAACCAGTCATTGTTTATGATTCTATCATAGAACCCGAATATCAAAGTCTCACTCTAGAAGAGACAGTGTCAAAGATTTTTCCTGATAACTTTAATTTCCTTCCTGATGACCTCATAAAAATGAGAAACTTTTATAAGTTCATCTTAGTTGACACCAAATCTGTTAAAATAACACATATCATAGACAAAAACAATTCTTCAAAGATTGCTTATTCAAAACTAAAGATTTTTAAAGCAATCAATCCAACTCATTGGAACCAAGGAATTTTTATAGAAAAATCTTTTTCAAAGCCTTTTGTTCCTCAATCTTACTCTTATCAGGATTACATCAAAGTCTTGTATAGAGTATTTTGGTTTTCCAACAGGAATCATTCTTAGTTCATTTCCTTTTGTCAAAACGGATATAAAATCAACTTTCCTTTTTGGTTTATTCAATGGTGGAATAATTTTGGTCTCACATATGGTATTCTACTAACACCCATTCAAGAATCTTATTTTTATTTTTCGAGGACAATTCAAAAGAATTCATTCCACAATTCAATGAGATTATGCCTTTACTTTCAAATTTCATGGATATTTTGTTGGAGTTTCAATTCAATTTCATATCCTTAACACAAAATTCTGATTAAAAACCTCAAGATCAAATGGTGGGAAAAATACAATTTTCAGCATGCCACAATCAAGCATATGAAATAATGGTTCGCAGAGAACGATTATCTCCAAGACATTGATCAAAGGAAGAACACTGAATTTTTAAACGACAAAATCAAAACTTCTTGCAGCACTCGTCCAAGCCACAACTGATGCAGATTTCCAAAGGTAAATATCAACAGCAGTAAATGCATCTTCATCTTCAAAGTCAGCATCTTCCTCCATACAGGAAGACGAAGTTCAAGCAGAACTAGAATATGACCTTGACGATCCATATCTCAACTCGCAGCCTATGTGAGCTCTGACGACATATACCTATTTCAAAAAGAAAGTAGGATCCACGAAAAGTCTTCACAAACAAGACTTCTTTCCGGTTTACTATTAATGCAATTTACTTTTCTTGTAAAAAAAAACGTGAATTCTCATCTCTAAAGTAATTTGTGAGTAAACTCTGTAAGTATTCCAGTTTACTCTTATATATATTGTTCTGTCATCCAGAAATCCAGAAGAAAAATTGAAGACGACGGGCGCAATTAAAAATCAAGTCCAAGGTTAAATTCAAATTGTGTATTTCATAAAGTGTTCGACTACGTTTGATGGTCGCAACCGTAAGTCGTAAAAAGATGAAGTGCGGTGAGCCTGTGGTCAATCAATAACCCGTCGTAG

mRNA sequence

AGAGCAAATTCTACCTCTTCAAGGGGCAATCGCCCATCTTCTTCTTCTAATTCTGCACCCTCACCAATGAGTGCAGATCAATATGCCATGGATTTAGGGTTTACCACAGTAACCCGATCCAGAGCAAGATCATCTCGCATACAGATTGGATCTCCCACGAAGTCATCAACTCCACCAAGGACTTCGGCCAATCTCATTCGTCCTTCAAGTGAAGTCGTTCAGATGAGGCCTCTTGCCTCTCCTTTATCTAATAGGGAGTCTTCTACTCCTCCTACTACTTATTCTCAAGTTATCACTCCTGATAAAAGATTTGTACCTAGACTCGAAATCAAATCTTATTTTCAAAAACCAGTCATTGTTTATGATTCTATCATAGAACCCGAATATCAAAGTCTCACTCTAGAAGAGACAGTGTCAAAGATTTTTCCTGATAACTTTAATTTCCTTCCTGATGACCTCCCTGTGGTCAATCAATA

Coding sequence (CDS)

AGAGCAAATTCTACCTCTTCAAGGGGCAATCGCCCATCTTCTTCTTCTAATTCTGCACCCTCACCAATGAGTGCAGATCAATATGCCATGGATTTAGGGTTTACCACAGTAACCCGATCCAGAGCAAGATCATCTCGCATACAGATTGGATCTCCCACGAAGTCATCAACTCCACCAAGGACTTCGGCCAATCTCATTCGTCCTTCAAGTGAAGTCGTTCAGATGAGGCCTCTTGCCTCTCCTTTATCTAATAGGGAGTCTTCTACTCCTCCTACTACTTATTCTCAAGTTATCACTCCTGATAAAAGATTTGTACCTAGACTCGAAATCAAATCTTATTTTCAAAAACCAGTCATTGTTTATGATTCTATCATAGAACCCGAATATCAAAGTCTCACTCTAGAAGAGACAGTGTCAAAGATTTTTCCTGATAACTTTAATTTCCTTCCTGATGACCTCCCTGTGGTCAATCAATA

Protein sequence

RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYDSIIEPEYQSLTLEETVSKIFPDNFNFLPDDLPVVNQX
Homology
BLAST of CsaV3_7G026260 vs. NCBI nr
Match: KAE8646253.1 (hypothetical protein Csa_023844, partial [Cucumis sativus])

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0

Query: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60
           RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR
Sbjct: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60

Query: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120
           TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV
Sbjct: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120

Query: 121 YDSIIEPEYQSLTLEETVSKIFPDNFNFLPDDLPVVNQ 159
           YDSIIEPEYQSLTLEETVSKIFPDNFNFLPDDLPVVNQ
Sbjct: 121 YDSIIEPEYQSLTLEETVSKIFPDNFNFLPDDLPVVNQ 158

BLAST of CsaV3_7G026260 vs. NCBI nr
Match: KAA0043136.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 6.7e-57
Identity = 125/153 (81.70%), Postives = 135/153 (88.24%), Query Frame = 0

Query: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60
           R NSTSS+GNRP SSSNSAPSP+SADQYAMDLGFTTVTR  +RS  I IGSPT+SSTPPR
Sbjct: 11  RTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPR 70

Query: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120
            S NLIRPSS VVQMRP ASP SNRESSTPPTTYSQ +TPDKRFVPR EIKSYFQKP++V
Sbjct: 71  PSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEIKSYFQKPIVV 130

Query: 121 YDSIIEPEYQSLTLEETVSKIFPDNFNFLPDDL 154
           YD IIE EYQSLT EETVSKIFP++FNFL +DL
Sbjct: 131 YDPIIELEYQSLTSEETVSKIFPEDFNFLLEDL 163

BLAST of CsaV3_7G026260 vs. NCBI nr
Match: ADN34145.1 (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 226.5 bits (576), Expect = 1.6e-55
Identity = 122/153 (79.74%), Postives = 132/153 (86.27%), Query Frame = 0

Query: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60
           R NSTSS+G+RPSSSSNS PSPMSA QY MDLGFT VTRSR+R S I IGSPT+SSTPPR
Sbjct: 11  RTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTPPR 70

Query: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120
            S NLIRPS  V+QMRP ASP SNRESSTPPTTYSQ +T DKRFVPR EIKSYFQK ++V
Sbjct: 71  PSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEIKSYFQKSIVV 130

Query: 121 YDSIIEPEYQSLTLEETVSKIFPDNFNFLPDDL 154
           YD IIEPEYQSLTLEE VSKIFP +FNFLP+DL
Sbjct: 131 YDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDL 163

BLAST of CsaV3_7G026260 vs. NCBI nr
Match: KAA0026217.1 (hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK30739.1 hypothetical protein E5676_scaffold343G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 3.1e-54
Identity = 120/153 (78.43%), Postives = 132/153 (86.27%), Query Frame = 0

Query: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60
           R NSTSS+GNR SSSSNSAPSPMSADQYAMDLGFT VTRSR+R S I IG PT+SSTPPR
Sbjct: 11  RTNSTSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIGFPTESSTPPR 70

Query: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120
            SANLIRP   VVQM+P ASP SNR+SSTPPTTYSQ +TPDKRFVPR +IK YFQK ++V
Sbjct: 71  PSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPKIKFYFQKSIVV 130

Query: 121 YDSIIEPEYQSLTLEETVSKIFPDNFNFLPDDL 154
           YD  IE EYQSLTLEE VSKIFP++FNFLP+DL
Sbjct: 131 YDPTIELEYQSLTLEEAVSKIFPEDFNFLPEDL 163

BLAST of CsaV3_7G026260 vs. NCBI nr
Match: KAA0066421.1 (hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK00863.1 hypothetical protein E5676_scaffold602G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 203.0 bits (515), Expect = 1.9e-48
Identity = 106/131 (80.92%), Postives = 115/131 (87.79%), Query Frame = 0

Query: 23  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPL 82
           MSADQYAMDLGFTTVTRSR+RSS I+I S T+SSTPPR SANLIRP    VQMRP ASP 
Sbjct: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPS 60

Query: 83  SNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYDSIIEPEYQSLTLEETVSKIF 142
           SNRESSTPPTTYSQ +TPDKRFVPR EIKSYFQK ++VYD IIEPEYQS+TLE+TVSKIF
Sbjct: 61  SNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQKSIVVYDLIIEPEYQSITLEKTVSKIF 120

Query: 143 PDNFNFLPDDL 154
            DNFN LP+DL
Sbjct: 121 LDNFNLLPEDL 131

BLAST of CsaV3_7G026260 vs. ExPASy TrEMBL
Match: A0A5A7TM80 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00220 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.2e-57
Identity = 125/153 (81.70%), Postives = 135/153 (88.24%), Query Frame = 0

Query: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60
           R NSTSS+GNRP SSSNSAPSP+SADQYAMDLGFTTVTR  +RS  I IGSPT+SSTPPR
Sbjct: 11  RTNSTSSKGNRPPSSSNSAPSPLSADQYAMDLGFTTVTRFISRSFGIWIGSPTESSTPPR 70

Query: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120
            S NLIRPSS VVQMRP ASP SNRESSTPPTTYSQ +TPDKRFVPR EIKSYFQKP++V
Sbjct: 71  PSTNLIRPSSGVVQMRPPASPSSNRESSTPPTTYSQAVTPDKRFVPRPEIKSYFQKPIVV 130

Query: 121 YDSIIEPEYQSLTLEETVSKIFPDNFNFLPDDL 154
           YD IIE EYQSLT EETVSKIFP++FNFL +DL
Sbjct: 131 YDPIIELEYQSLTSEETVSKIFPEDFNFLLEDL 163

BLAST of CsaV3_7G026260 vs. ExPASy TrEMBL
Match: E5GCE6 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 7.9e-56
Identity = 122/153 (79.74%), Postives = 132/153 (86.27%), Query Frame = 0

Query: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60
           R NSTSS+G+RPSSSSNS PSPMSA QY MDLGFT VTRSR+R S I IGSPT+SSTPPR
Sbjct: 11  RTNSTSSKGHRPSSSSNSEPSPMSAYQYTMDLGFTIVTRSRSRLSSIWIGSPTESSTPPR 70

Query: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120
            S NLIRPS  V+QMRP ASP SNRESSTPPTTYSQ +T DKRFVPR EIKSYFQK ++V
Sbjct: 71  PSVNLIRPSGGVIQMRPPASPSSNRESSTPPTTYSQAVTLDKRFVPRPEIKSYFQKSIVV 130

Query: 121 YDSIIEPEYQSLTLEETVSKIFPDNFNFLPDDL 154
           YD IIEPEYQSLTLEE VSKIFP +FNFLP+DL
Sbjct: 131 YDPIIEPEYQSLTLEEMVSKIFPKDFNFLPEDL 163

BLAST of CsaV3_7G026260 vs. ExPASy TrEMBL
Match: A0A5D3E4J4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00750 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.5e-54
Identity = 120/153 (78.43%), Postives = 132/153 (86.27%), Query Frame = 0

Query: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60
           R NSTSS+GNR SSSSNSAPSPMSADQYAMDLGFT VTRSR+R S I IG PT+SSTPPR
Sbjct: 11  RTNSTSSKGNRLSSSSNSAPSPMSADQYAMDLGFTIVTRSRSRLSGIGIGFPTESSTPPR 70

Query: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120
            SANLIRP   VVQM+P ASP SNR+SSTPPTTYSQ +TPDKRFVPR +IK YFQK ++V
Sbjct: 71  PSANLIRPFGRVVQMKPPASPSSNRKSSTPPTTYSQAVTPDKRFVPRPKIKFYFQKSIVV 130

Query: 121 YDSIIEPEYQSLTLEETVSKIFPDNFNFLPDDL 154
           YD  IE EYQSLTLEE VSKIFP++FNFLP+DL
Sbjct: 131 YDPTIELEYQSLTLEEAVSKIFPEDFNFLPEDL 163

BLAST of CsaV3_7G026260 vs. ExPASy TrEMBL
Match: A0A5D3BM67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G00180 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 9.4e-49
Identity = 106/131 (80.92%), Postives = 115/131 (87.79%), Query Frame = 0

Query: 23  MSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPRTSANLIRPSSEVVQMRPLASPL 82
           MSADQYAMDLGFTTVTRSR+RSS I+I S T+SSTPPR SANLIRP    VQMRP ASP 
Sbjct: 1   MSADQYAMDLGFTTVTRSRSRSSSIRIESSTESSTPPRPSANLIRPFGGAVQMRPPASPS 60

Query: 83  SNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIVYDSIIEPEYQSLTLEETVSKIF 142
           SNRESSTPPTTYSQ +TPDKRFVPR EIKSYFQK ++VYD IIEPEYQS+TLE+TVSKIF
Sbjct: 61  SNRESSTPPTTYSQTVTPDKRFVPRPEIKSYFQKSIVVYDLIIEPEYQSITLEKTVSKIF 120

Query: 143 PDNFNFLPDDL 154
            DNFN LP+DL
Sbjct: 121 LDNFNLLPEDL 131

BLAST of CsaV3_7G026260 vs. ExPASy TrEMBL
Match: A0A5A7UFZ9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1248G00100 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.8e-47
Identity = 107/145 (73.79%), Postives = 123/145 (84.83%), Query Frame = 0

Query: 1   RANSTSSRGNRPSSSSNSAPSPMSADQYAMDLGFTTVTRSRARSSRIQIGSPTKSSTPPR 60
           R NSTSS+GNRPSSSSN APSPMS DQYAM LGFTT+T+S++RSS I+IGSPT+S TPPR
Sbjct: 11  RTNSTSSKGNRPSSSSNFAPSPMSVDQYAMHLGFTTLTQSKSRSSGIRIGSPTESLTPPR 70

Query: 61  TSANLIRPSSEVVQMRPLASPLSNRESSTPPTTYSQVITPDKRFVPRLEIKSYFQKPVIV 120
             ANLIRPS +VVQMR   SPLSNRESSTPPTTYSQ +TPDKRFVPRLEIKSYFQKP +V
Sbjct: 71  PLANLIRPSGKVVQMRFPTSPLSNRESSTPPTTYSQAVTPDKRFVPRLEIKSYFQKPTVV 130

Query: 121 YDSIIEPEYQ-SLTLEETVSKIFPD 145
           YD IIEP YQ S +++E   ++ P+
Sbjct: 131 YDPIIEPGYQTSSSIQEDEEQVDPE 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646253.11.3e-76100.00hypothetical protein Csa_023844, partial [Cucumis sativus][more]
KAA0043136.16.7e-5781.70putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK23922.1 putative... [more]
ADN34145.11.6e-5579.74hypothetical protein [Cucumis melo subsp. melo][more]
KAA0026217.13.1e-5478.43hypothetical protein E6C27_scaffold19G001920 [Cucumis melo var. makuwa] >TYK3073... [more]
KAA0066421.11.9e-4880.92hypothetical protein E6C27_scaffold21G005030 [Cucumis melo var. makuwa] >TYK0086... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TM803.2e-5781.70Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
E5GCE67.9e-5679.74Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3E4J41.5e-5478.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BM679.4e-4980.92Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UFZ98.8e-4773.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G026260.1CsaV3_7G026260.1mRNA