CsaV3_7G025680 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G025680
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	glycine-rich protein 5-like
Location	chr7: 15126605 .. 15127069 (-)
RNA-Seq Expression	CsaV3_7G025680
Synteny	CsaV3_7G025680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACACACAACTGTACGTCTCCTAGACGAAGAATTAAGAAGAAGAAAATGGCCAAATTGTTCATTGCTTTGCTCCTCGCTCTTGTAGCCACTCATGCCCTAGCTAGACCTATTACGCCGGGCACCACCTTCGACGACCAAAAGAACTTCCTCACTTACGGTGGCCTCGGTGGCTACTCTGGCATTGGCAGCAATGGCCTCCCCTTTGGTGGGATGGGAGGTGTCATTGGAGGAACTGGGCCCGGTGGTCTCGGCGGTGGCCTCGGTGGCGCTACTGGAATCGGTGGACTTGGAGGCCCGGGAGGTGGAGCTGCCGGTGGACTCGGAAGCGGAGCTGGTGGTGGAGTTGGTATTGGCGGTGGTTCTGGTCTTACTAATCCTTGAAGTTATTTTAATCTCGTTTTATTTCTACTCAAAACGTTGTTAGAGTGTGAAGTTTAGTTATTTTAATTTGCCTTAAGTGGA

mRNA sequence

ATGGCCAAATTGTTCATTGCTTTGCTCCTCGCTCTTGTAGCCACTCATGCCCTAGCTAGACCTATTACGCCGGGCACCACCTTCGACGACCAAAAGAACTTCCTCACTTACGGTGGCCTCGGTGGCTACTCTGGCATTGGCAGCAATGGCCTCCCCTTTGGTGGGATGGGAGGTGTCATTGGAGGAACTGGGCCCGGTGGTCTCGGCGGTGGCCTCGGTGGCGCTACTGGAATCGGTGGAGCTGCCGGTGGACTCGGAAGCGGAGCTGGTGGTGGAGTTGGTATTGGCGGTGGTTCTGGTCTTACTAATCCTTGA

Coding sequence (CDS)

ATGGCCAAATTGTTCATTGCTTTGCTCCTCGCTCTTGTAGCCACTCATGCCCTAGCTAGACCTATTACGCCGGGCACCACCTTCGACGACCAAAAGAACTTCCTCACTTACGGTGGCCTCGGTGGCTACTCTGGCATTGGCAGCAATGGCCTCCCCTTTGGTGGGATGGGAGGTGTCATTGGAGGAACTGGGCCCGGTGGTCTCGGCGGTGGCCTCGGTGGCGCTACTGGAATCGGTGGAGCTGCCGGTGGACTCGGAAGCGGAGCTGGTGGTGGAGTTGGTATTGGCGGTGGTTCTGGTCTTACTAATCCTTGA

Protein sequence

MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVIGGTGPGGLGGGLGGATGIGGAAGGLGSGAGGGVGIGGGSGLTNP*

Homology

[Close]

BLAST of CsaV3_7G025680 vs. NCBI nr
Match: KAE8646238.1 (hypothetical protein Csa_015546 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 6.4e-40
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60
           MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GGTGPGGLGGGLGGATGIGGAAGGLGSGAGGGVGIGGGSGLTNP 105
           GGTGPGGLGGGLGGATGIGGAAGGLGSGAGGGVGIGGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGAAGGLGSGAGGGVGIGGGSGLTNP 104

[Close]

BLAST of CsaV3_7G025680 vs. NCBI nr
Match: XP_011659167.2 (glycine-rich protein 5 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 7.8e-38
Identity = 104/111 (93.69%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60
           MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GGTGPGGLGGGLGGATGI-------GGAAGGLGSGAGGGVGIGGGSGLTNP 105
           GGTGPGGLGGGLGGATGI       GGAAGGLGSGAGGGVGIGGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLTNP 111

[Close]

BLAST of CsaV3_7G025680 vs. NCBI nr
Match: KAA0050569.1 (glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa] >TYK18808.1 glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 158.7 bits (400), Expect = 2.8e-35
Identity = 100/115 (86.96%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60
           MAKLFIALLLAL+ATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGG+GGV+
Sbjct: 1   MAKLFIALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGPGGLGGGLGGATGI-------GGAAGGLGS----GAGGGVGIGGGSGLTNP 105
           GGTGPGGLGGGLGGATGI       GGAAGGLGS    GAGGGVG+GGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of CsaV3_7G025680 vs. NCBI nr
Match: XP_008462002.1 (PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 6.2e-35
Identity = 99/115 (86.09%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60
           MAKLF+ALLLAL+ATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGG+GGV+
Sbjct: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGPGGLGGGLGGATGI-------GGAAGGLGS----GAGGGVGIGGGSGLTNP 105
           GGTGPGGLGGGLGGATGI       GGAAGGLGS    GAGGGVG+GGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of CsaV3_7G025680 vs. NCBI nr
Match: XP_038899239.1 (glycine-rich protein 5-like [Benincasa hispida])

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-27
Identity = 92/116 (79.31%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60
           MAKLF+ALLLALVATHALARP TP TTF+DQKNFLTYGGLG YSGIGSNGLPFGG+GG +
Sbjct: 1   MAKLFMALLLALVATHALARP-TPDTTFNDQKNFLTYGGLGAYSGIGSNGLPFGGVGGAM 60

Query: 61  GGTG-PGGLGGGLGGATGI-------GGAAGGLGSGAGG----GVGIGGGSGLTNP 105
           GGTG  GGLGGGLGGATG+       GGAAGGLG GAGG    GVG+GGGSGLTNP
Sbjct: 61  GGTGLGGGLGGGLGGATGLGGLGGSGGGAAGGLGGGAGGGAGAGVGVGGGSGLTNP 115

[Close]

BLAST of CsaV3_7G025680 vs. ExPASy TrEMBL
Match: A0A0A0K6P3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336480 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.8e-38
Identity = 104/111 (93.69%), Postives = 104/111 (93.69%), Query Frame = 0


Query: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60
           MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI
Sbjct: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60

Query: 61  GGTGPGGLGGGLGGATGI-------GGAAGGLGSGAGGGVGIGGGSGLTNP 105
           GGTGPGGLGGGLGGATGI       GGAAGGLGSGAGGGVGIGGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGPGGGAAGGLGSGAGGGVGIGGGSGLTNP 111

[Close]

BLAST of CsaV3_7G025680 vs. ExPASy TrEMBL
Match: A0A5D3D5H6 (Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00260 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.3e-35
Identity = 100/115 (86.96%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60
           MAKLFIALLLAL+ATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGG+GGV+
Sbjct: 1   MAKLFIALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGPGGLGGGLGGATGI-------GGAAGGLGS----GAGGGVGIGGGSGLTNP 105
           GGTGPGGLGGGLGGATGI       GGAAGGLGS    GAGGGVG+GGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of CsaV3_7G025680 vs. ExPASy TrEMBL
Match: A0A1S3CFV5 (glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC103500476 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.0e-35
Identity = 99/115 (86.09%), Postives = 104/115 (90.43%), Query Frame = 0


Query: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60
           MAKLF+ALLLAL+ATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGG+GGV+
Sbjct: 1   MAKLFMALLLALIATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGVGGVV 60

Query: 61  GGTGPGGLGGGLGGATGI-------GGAAGGLGS----GAGGGVGIGGGSGLTNP 105
           GGTGPGGLGGGLGGATGI       GGAAGGLGS    GAGGGVG+GGGSGLTNP
Sbjct: 61  GGTGPGGLGGGLGGATGIGGLGGLGGGAAGGLGSGVGGGAGGGVGVGGGSGLTNP 115

[Close]

BLAST of CsaV3_7G025680 vs. ExPASy TrEMBL
Match: A0A6J1KVV3 (acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.2e-23
Identity = 76/102 (74.51%), Postives = 84/102 (82.35%), Query Frame = 0


Query: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60
           MAKLF+A+LLAL+ATHALARP     TF DQKNFLTYGGLGGYSGIGSNGLPFGG+GG +
Sbjct: 1   MAKLFMAMLLALLATHALARPTPKDATFTDQKNFLTYGGLGGYSGIGSNGLPFGGLGGAV 60

Query: 61  GGTGPGGLGGGLGGATGIGGAAGGLGSGAGGGVGIG-GGSGL 102
           GGTGPGG+GGG+GG  G GG   GLG G GGG+G G GG GL
Sbjct: 61  GGTGPGGIGGGIGGLGGFGGGGAGLGGGLGGGLGGGLGGGGL 102

[Close]

BLAST of CsaV3_7G025680 vs. ExPASy TrEMBL
Match: A0A5A7U5T7 (Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00150 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 6.5e-22
Identity = 79/101 (78.22%), Postives = 83/101 (82.18%), Query Frame = 0


Query: 1   MAKLFIALLLALVATHALARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMGGVI 60
           MAKLF+ALLLALVATHALARP     TF DQKNFLTYGG+GGYSGIGSNGLPFGG+GG I
Sbjct: 1   MAKLFMALLLALVATHALARPTPKDDTFSDQKNFLTYGGVGGYSGIGSNGLPFGGVGGAI 60

Query: 61  GGTG-PGGLGGGLGGATGIGGAAGGLGSGAGGGVGIGGGSG 101
           GG G  GGLGGGLGGATGIGG  GGLG   GG  GIGG +G
Sbjct: 61  GGGGLGGGLGGGLGGATGIGGGLGGLGGTGGGLGGIGGTTG 101

[Close]

BLAST of CsaV3_7G025680 vs. TAIR 10
Match: AT4G29030.1 (Putative membrane lipoprotein )

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 57/109 (52.29%), Postives = 64/109 (58.72%), Query Frame = 0


Query: 1   MAKLFIALLLALVATHAL---ARPITPGTTFDDQKNFLTYGGLGGYSGIGSNGLPFGGMG 60
           MAK F  + L      AL   AR +  G    DQKN+L YG  GGYSG+G NGLPFGG+G
Sbjct: 1   MAKWFFTIFLVFALASALACGARNVPVG--LSDQKNYLGYG--GGYSGVGDNGLPFGGVG 60

Query: 61  GVIGGTGP-------GGLGGGLGGATGIGGAAGGLGSGAGGGVGIGGGS 100
           G + G G        GG GGGLGG  G GGA  GLG G GGG GIG G+
Sbjct: 61  GGVSGPGGNLGYGGFGGAGGGLGGGLG-GGAGSGLGGGLGGGSGIGAGT 104

The following BLAST results are available for this feature:

BLAST of CsaV3_7G025680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646238.1	6.4e-40	100.00	hypothetical protein Csa_015546 [Cucumis sativus]	[more]
XP_011659167.2	7.8e-38	93.69	glycine-rich protein 5 [Cucumis sativus]	[more]
KAA0050569.1	2.8e-35	86.96	glycine-rich cell wall structural protein 1-like [Cucumis melo var. makuwa] >TYK...	[more]
XP_008462002.1	6.2e-35	86.09	PREDICTED: glycine-rich cell wall structural protein 1-like [Cucumis melo]	[more]
XP_038899239.1	2.8e-27	79.31	glycine-rich protein 5-like [Benincasa hispida]	[more]

BLAST of CsaV3_7G025680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G025680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6P3	3.8e-38	93.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336480 PE=4 SV=1	[more]
A0A5D3D5H6	1.3e-35	86.96	Glycine-rich cell wall structural protein 1-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3CFV5	3.0e-35	86.09	glycine-rich cell wall structural protein 1-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1KVV3	1.2e-23	74.51	acanthoscurrin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111498068 PE=4 SV=1	[more]
A0A5A7U5T7	6.5e-22	78.22	Acanthoscurrin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94...	[more]

BLAST of CsaV3_7G025680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29030.1	1.8e-08	52.29	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34463:SF11	GLYCINE-RICH PROTEIN	coord: 1..100
None	No IPR available	PANTHER	PTHR34463	GLYCINE-RICH PROTEIN	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G025680.1	CsaV3_7G025680.1	mRNA