CsaV3_7G025660 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G025660
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	NBS-LRR type resistance protein
Location	chr7: 15109610 .. 15109939 (+)
RNA-Seq Expression	CsaV3_7G025660
Synteny	CsaV3_7G025660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGGAAAGCAAGATCTTACCAAAGCCCTTAAGAAATACCAAGCCACTGTTGGCAAAGCAAGCCCATTCAGTGATGGAGTTGAGCATTCTCCATTTGGCAGTCTTGTGTTGGAGCAAAGAAAAGAAGAAATACAACTTAAAATGGTGGTCATCAATGGAGTAAAAATCCAACTTCTTGAGGATAAGTTGGGCAACCTACTTGCCATAGTCTCTAGAGAGACTTCCAAAAGAGAAAAAGAGCAAAAGGAACAAGAAGAGCGAGAAATGTTAGAAAAAGAAGGAATGGGAAAGGAGAGGGTTGAGGAAGAGCAAAAAGAAAGAGAATAA

mRNA sequence

ATGTTTGGAAAGCAAGATCTTACCAAAGCCCTTAAGAAATACCAAGCCACTGTTGGCAAAGCAAGCCCATTCAGTGATGGAGTTGAGCATTCTCCATTTGGCAGTCTTGTGTTGGAGCAAAGAAAAGAAGAAATACAACTTAAAATGGTGGTCATCAATGGAGTAAAAATCCAACTTCTTGAGGATAAGTTGGGCAACCTACTTGCCATAGTCTCTAGAGAGACTTCCAAAAGAGAAAAAGAGCAAAAGGAACAAGAAGAGCGAGAAATGTTAGAAAAAGAAGGAATGGGAAAGGAGAGGGTTGAGGAAGAGCAAAAAGAAAGAGAATAA

Coding sequence (CDS)

ATGTTTGGAAAGCAAGATCTTACCAAAGCCCTTAAGAAATACCAAGCCACTGTTGGCAAAGCAAGCCCATTCAGTGATGGAGTTGAGCATTCTCCATTTGGCAGTCTTGTGTTGGAGCAAAGAAAAGAAGAAATACAACTTAAAATGGTGGTCATCAATGGAGTAAAAATCCAACTTCTTGAGGATAAGTTGGGCAACCTACTTGCCATAGTCTCTAGAGAGACTTCCAAAAGAGAAAAAGAGCAAAAGGAACAAGAAGAGCGAGAAATGTTAGAAAAAGAAGGAATGGGAAAGGAGAGGGTTGAGGAAGAGCAAAAAGAAAGAGAATAA

Protein sequence

MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLLEDKLGNLLAIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE*

Homology

[Close]

BLAST of CsaV3_7G025660 vs. NCBI nr
Match: KGN44567.1 (hypothetical protein Csa_016483 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 6.2e-46
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL 60
           MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL
Sbjct: 1   MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL 60

Query: 61  EDKLGNLLAIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE 110
           EDKLGNLLAIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE
Sbjct: 61  EDKLGNLLAIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE 109

[Close]

BLAST of CsaV3_7G025660 vs. NCBI nr
Match: TYK04360.1 (hypothetical protein E5676_scaffold675G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL 60
           M+GKQ LT+AL KYQ  + K SP+++GVE + F  L+ EQ +EE  LKMVVIN V IQLL
Sbjct: 1   MYGKQPLTEALMKYQEIIAKTSPYNEGVEKTSFDGLMPEQGREERPLKMVVINEVAIQLL 60

Query: 61  EDKLGNLLAIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE 110
           EDK G+LLAI+  ET KRE+EQK+QEERE L+KE + KER  +E K+RE
Sbjct: 61  EDKSGDLLAIIFGETLKREEEQKDQEERERLDKEKVEKERANKESKKRE 109

[Close]

BLAST of CsaV3_7G025660 vs. NCBI nr
Match: KAA0033147.1 (hypothetical protein E6C27_scaffold269G002910 [Cucumis melo var. makuwa] >TYK17087.1 hypothetical protein E5676_scaffold1032G00150 [Cucumis melo var. makuwa])

HSP 1 Score: 105.1 bits (261), Expect = 3.8e-19
Identity = 70/109 (64.22%), Postives = 81/109 (74.31%), Query Frame = 0


Query: 1   MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL 60
           MFGKQ    ALKKYQ TVGKAS  ++G E +P   LV EQRKE+  LKMV+INGV+IQL 
Sbjct: 1   MFGKQ----ALKKYQGTVGKASLSNEGAEKTPSDGLVSEQRKEKRPLKMVIINGVEIQLT 60

Query: 61  EDKLGNLLAIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE 110
           EDKLG+LLAI+  ETSKRE EQK QE    LEKE + KE  E+EQ+ERE
Sbjct: 61  EDKLGDLLAIIFGETSKREDEQKVQER---LEKEKVEKEEAEKEQRERE 102

[Close]

BLAST of CsaV3_7G025660 vs. NCBI nr
Match: KAA0034977.1 (hypothetical protein E6C27_scaffold57G00110 [Cucumis melo var. makuwa] >TYK02319.1 hypothetical protein E5676_scaffold155G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 89.0 bits (219), Expect = 2.8e-14
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL 60
          MFG+Q L +ALKKYQAT+G+ASP +  +EHSP    +LE +K EIQLK VVINGVKIQL 
Sbjct: 1  MFGEQSLIEALKKYQATLGEASPSNKVIEHSPVDGPMLE-KKGEIQLKTVVINGVKIQLP 60

Query: 61 EDKLGNLLAIVSR 74
          +DKLG+LL IVSR
Sbjct: 61 KDKLGDLLTIVSR 72

[Close]

BLAST of CsaV3_7G025660 vs. NCBI nr
Match: KAA0048215.1 (hypothetical protein E6C27_scaffold63G001290 [Cucumis melo var. makuwa] >TYK08041.1 hypothetical protein E5676_scaffold265G001870 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 9.1e-13
Identity = 56/101 (55.45%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 9   KALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLLEDKLGNLL 68
           +ALKKYQAT+GKASP ++ VEHSP    VLE+ KE+I LK+V IN VKIQL EDKL +LL
Sbjct: 21  QALKKYQATLGKASPSNEAVEHSPASGPVLEE-KEKIPLKIVFINRVKIQLPEDKLQDLL 80

Query: 69  AIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE 110
           AIVS ETS++E++++E+E+ E  ++E   K+   +++K RE
Sbjct: 81  AIVSGETSRKEEDREEKEKEEKNKEEHEEKKEEAKKKKNRE 120

[Close]

BLAST of CsaV3_7G025660 vs. ExPASy TrEMBL
Match: A0A0A0K8A0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336460 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.0e-46
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0


Query: 1   MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL 60
           MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL
Sbjct: 1   MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL 60

Query: 61  EDKLGNLLAIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE 110
           EDKLGNLLAIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE
Sbjct: 61  EDKLGNLLAIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE 109

[Close]

BLAST of CsaV3_7G025660 vs. ExPASy TrEMBL
Match: A0A5D3BZ15 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00270 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.5e-21
Identity = 66/109 (60.55%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL 60
           M+GKQ LT+AL KYQ  + K SP+++GVE + F  L+ EQ +EE  LKMVVIN V IQLL
Sbjct: 1   MYGKQPLTEALMKYQEIIAKTSPYNEGVEKTSFDGLMPEQGREERPLKMVVINEVAIQLL 60

Query: 61  EDKLGNLLAIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE 110
           EDK G+LLAI+  ET KRE+EQK+QEERE L+KE + KER  +E K+RE
Sbjct: 61  EDKSGDLLAIIFGETLKREEEQKDQEERERLDKEKVEKERANKESKKRE 109

[Close]

BLAST of CsaV3_7G025660 vs. ExPASy TrEMBL
Match: A0A5A7SUZ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00150 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 70/109 (64.22%), Postives = 81/109 (74.31%), Query Frame = 0


Query: 1   MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL 60
           MFGKQ    ALKKYQ TVGKAS  ++G E +P   LV EQRKE+  LKMV+INGV+IQL 
Sbjct: 1   MFGKQ----ALKKYQGTVGKASLSNEGAEKTPSDGLVSEQRKEKRPLKMVIINGVEIQLT 60

Query: 61  EDKLGNLLAIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE 110
           EDKLG+LLAI+  ETSKRE EQK QE    LEKE + KE  E+EQ+ERE
Sbjct: 61  EDKLGDLLAIIFGETSKREDEQKVQER---LEKEKVEKEEAEKEQRERE 102

[Close]

BLAST of CsaV3_7G025660 vs. ExPASy TrEMBL
Match: A0A5D3BW29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00040 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 49/73 (67.12%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MFGKQDLTKALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLL 60
          MFG+Q L +ALKKYQAT+G+ASP +  +EHSP    +LE +K EIQLK VVINGVKIQL 
Sbjct: 1  MFGEQSLIEALKKYQATLGEASPSNKVIEHSPVDGPMLE-KKGEIQLKTVVINGVKIQLP 60

Query: 61 EDKLGNLLAIVSR 74
          +DKLG+LL IVSR
Sbjct: 61 KDKLGDLLTIVSR 72

[Close]

BLAST of CsaV3_7G025660 vs. ExPASy TrEMBL
Match: A0A5D3C865 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001870 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.4e-13
Identity = 56/101 (55.45%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 9   KALKKYQATVGKASPFSDGVEHSPFGSLVLEQRKEEIQLKMVVINGVKIQLLEDKLGNLL 68
           +ALKKYQAT+GKASP ++ VEHSP    VLE+ KE+I LK+V IN VKIQL EDKL +LL
Sbjct: 21  QALKKYQATLGKASPSNEAVEHSPASGPVLEE-KEKIPLKIVFINRVKIQLPEDKLQDLL 80

Query: 69  AIVSRETSKREKEQKEQEEREMLEKEGMGKERVEEEQKERE 110
           AIVS ETS++E++++E+E+ E  ++E   K+   +++K RE
Sbjct: 81  AIVSGETSRKEEDREEKEKEEKNKEEHEEKKEEAKKKKNRE 120

The following BLAST results are available for this feature:

BLAST of CsaV3_7G025660 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44567.1	6.2e-46	100.00	hypothetical protein Csa_016483 [Cucumis sativus]	[more]
TYK04360.1	1.5e-20	60.55	hypothetical protein E5676_scaffold675G00270 [Cucumis melo var. makuwa]	[more]
KAA0033147.1	3.8e-19	64.22	hypothetical protein E6C27_scaffold269G002910 [Cucumis melo var. makuwa] >TYK170...	[more]
KAA0034977.1	2.8e-14	67.12	hypothetical protein E6C27_scaffold57G00110 [Cucumis melo var. makuwa] >TYK02319...	[more]
KAA0048215.1	9.1e-13	55.45	hypothetical protein E6C27_scaffold63G001290 [Cucumis melo var. makuwa] >TYK0804...	[more]

BLAST of CsaV3_7G025660 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G025660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8A0	3.0e-46	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G336460 PE=4 SV=1	[more]
A0A5D3BZ15	7.5e-21	60.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SUZ4	1.8e-19	64.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BW29	1.4e-14	67.12	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3C865	4.4e-13	55.45	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_7G025660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 73..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G025660.1	CsaV3_7G025660.1	mRNA