CsaV3_7G025090 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G025090
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionReverse transcriptase
Locationchr7: 14427174 .. 14428128 (-)
RNA-Seq ExpressionCsaV3_7G025090
SyntenyCsaV3_7G025090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATTATCTCTTGGAACGTTCAAGGTATTGGCTCGTGGAAAATGAGAGCCTTGATTACGCGTTTAATTAAACACAACCCAGATTTTTTTCTTTTGCAGGAAACAAATCTAGATGACATTGACTCACTTATGATTAAATCCATATGGAGCTCCTATTTTATTGGTTGAGCAGCACTGGACGCTATTGACTCATCTGGAGGCATTATTGTCCTATGGAGTGCACCAGATTTCACTGTTCAGGAGATTATACAGGGTAGATACTGACTCCATTCACACTATTTTGGCTGACAGTTTTTCACTGTGGATTTTGACAGTATATGGACCTTCCGTTCATGGTTACCATGTTGATTAATGGCAAGAGATTTATGATTTGGCTGGTGTGGGCACTGACTCTTGGATCCTTGGTGGTGGTTTTATTGTAACCCGCACCATGACCATTCCATCTCTCCTGGTATGCGTTCTTTCAACCAATGGATCAATGACTACAAGTTGAAAGACATTCCTATGAATAATAGCCATTTCATATGGTCCGGTGAAAGTCAATCCCAATACTCCTTGCTATTTTGACAGGTTGCATTTGACAAATTAGACCACGTTACCTCTGATTACTATTCTCTGGCTCGTGTCGGGTAACATTGAATGGGGCCCTTATTCTTTTCATTTTAAAAATTCATGGCTCTAGGTCAATAATCTTCGGCATGTTGTGGAATCTTGGTGGTCTAATACCCGTGTGGCTGGCCATCCCGGACACATTTTAATGATGAAGCTCAAACAACTCAAGTCTTTTATCCGCTCTTGGGCCAATACACAGCAATCGATATCTTCTCAATTAACAAATCTTGTACCTAACCTCCCTAATCTGGACAACTTGATGGATCTTAGTCATCTTACAAATGAGAAACTTACCTCCCAGCATGAGATTAGAGAACAAATTGAGAATTTAACTGCTTAA

mRNA sequence

ATGAAGATTATCTCTTGGAACGTTCAAGCACTGGACGCTATTGACTCATCTGGAGGCATTATTGTCCTATGGAGTGCACCAGATTTCACTGTTCAGGAGATTATACAGGAGATTTATGATTTGGCTGGTGTGGGCACTGACTCTTGGATCCTTGGTGGTGGTTTTATTGTAACCCGCACCATGACCATTCCATCTCTCCTGGTCAATAATCTTCGGCATGTTGTGGAATCTTGGTGGTCTAATACCCGTGTGGCTGGCCATCCCGGACACATTTTAATGATGAAGCTCAAACAACTCAAGTCTTTTATCCGCTCTTGGGCCAATACACAGCAATCGATATCTTCTCAATTAACAAATCTTGTACCTAACCTCCCTAATCTGGACAACTTGATGGATCTTAGTCATCTTACAAATGAGAAACTTACCTCCCAGCATGAGATTAGAGAACAAATTGAGAATTTAACTGCTTAA

Coding sequence (CDS)

ATGAAGATTATCTCTTGGAACGTTCAAGCACTGGACGCTATTGACTCATCTGGAGGCATTATTGTCCTATGGAGTGCACCAGATTTCACTGTTCAGGAGATTATACAGGAGATTTATGATTTGGCTGGTGTGGGCACTGACTCTTGGATCCTTGGTGGTGGTTTTATTGTAACCCGCACCATGACCATTCCATCTCTCCTGGTCAATAATCTTCGGCATGTTGTGGAATCTTGGTGGTCTAATACCCGTGTGGCTGGCCATCCCGGACACATTTTAATGATGAAGCTCAAACAACTCAAGTCTTTTATCCGCTCTTGGGCCAATACACAGCAATCGATATCTTCTCAATTAACAAATCTTGTACCTAACCTCCCTAATCTGGACAACTTGATGGATCTTAGTCATCTTACAAATGAGAAACTTACCTCCCAGCATGAGATTAGAGAACAAATTGAGAATTTAACTGCTTAA

Protein sequence

MKIISWNVQALDAIDSSGGIIVLWSAPDFTVQEIIQEIYDLAGVGTDSWILGGGFIVTRTMTIPSLLVNNLRHVVESWWSNTRVAGHPGHILMMKLKQLKSFIRSWANTQQSISSQLTNLVPNLPNLDNLMDLSHLTNEKLTSQHEIREQIENLTA*
Homology
BLAST of CsaV3_7G025090 vs. NCBI nr
Match: KAE8646206.1 (hypothetical protein Csa_016786 [Cucumis sativus])

HSP 1 Score: 314.7 bits (805), Expect = 4.5e-82
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0

Query: 1   MKIISWNVQALDAIDSSGGIIVLWSAPDFTVQEIIQEIYDLAGVGTDSWILGGGFIVTRT 60
           MKIISWNVQALDAIDSSGGIIVLWSAPDFTVQEIIQEIYDLAGVGTDSWILGGGFIVTRT
Sbjct: 1   MKIISWNVQALDAIDSSGGIIVLWSAPDFTVQEIIQEIYDLAGVGTDSWILGGGFIVTRT 60

Query: 61  MTIPSLLVNNLRHVVESWWSNTRVAGHPGHILMMKLKQLKSFIRSWANTQQSISSQLTNL 120
           MTIPSLLVNNLRHVVESWWSNTRVAGHPGHILMMKLKQLKSFIRSWANTQQSISSQLTNL
Sbjct: 61  MTIPSLLVNNLRHVVESWWSNTRVAGHPGHILMMKLKQLKSFIRSWANTQQSISSQLTNL 120

Query: 121 VPNLPNLDNLMDLSHLTNEKLTSQHEIREQIENLTA 157
           VPNLPNLDNLMDLSHLTNEKLTSQHEIREQIENLTA
Sbjct: 121 VPNLPNLDNLMDLSHLTNEKLTSQHEIREQIENLTA 156

BLAST of CsaV3_7G025090 vs. NCBI nr
Match: KAE8647279.1 (hypothetical protein Csa_002929 [Cucumis sativus])

HSP 1 Score: 85.9 bits (211), Expect = 3.4e-13
Identity = 53/159 (33.33%), Postives = 72/159 (45.28%), Query Frame = 0

Query: 4   ISWNVQALDAIDSSGGIIVLWSAPDFTVQEIIQEIYDLAGVGTDSWILGGGFIVTR---T 63
           I W    LD ID+ GG++++W +PDFT   +++E+ DL G+G DSWI GG   +TR    
Sbjct: 56  IDWT--TLDVIDTLGGLLIIWRSPDFT---LLEELDDLVGLGGDSWINGGDLNITRWSWE 115

Query: 64  MTIPSLLVNNLR------------------------------------------------ 111
            +    + NN++                                                
Sbjct: 116 KSHDQFIPNNMQLFNQWIANYHLRDIVTLDHFPPAMIACDIDWGPCPFRIEKSWLSTPLF 175

BLAST of CsaV3_7G025090 vs. NCBI nr
Match: TYK17996.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 9.3e-11
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 74  VVESWWSNTRVAGHPGHILMMKLKQLKSFIRSWANTQQSISSQLTNLVPNLPNLDNLMDL 133
           +VE+WW+N RVAG P H LMMKLK L+ F+RSW N Q   +++L +L+  L  LDN+ + 
Sbjct: 28  LVETWWTNNRVAGWPRHGLMMKLKALQMFLRSW-NNQHREATKLPSLISQLRELDNIGNR 87

Query: 134 SHLTNEKLTSQHEIREQIENLTA 157
             L+ E+L++   +REQIE LTA
Sbjct: 88  IQLSVEQLSTSCLLREQIEQLTA 109

BLAST of CsaV3_7G025090 vs. NCBI nr
Match: TYK17414.1 (hypothetical protein E5676_scaffold434G002760 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-06
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 3   IISWNVQALDAIDSSGGIIVLWSAPDFTVQEIIQEIY-------DLAGVGTDSWILGGGF 60
           II W+   +DAID+S G+I L SAPDFTV ++IQ +Y       DLAG+G DSWI+GG F
Sbjct: 88  IIGWS--EIDAIDTSDGLI-LRSAPDFTVHDVIQGLYIVSIQLDDLAGLGGDSWIVGGNF 147

BLAST of CsaV3_7G025090 vs. NCBI nr
Match: KAE8648339.1 (hypothetical protein Csa_023126 [Cucumis sativus])

HSP 1 Score: 57.0 bits (136), Expect = 1.7e-04
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 70  NLRHVVESWWSNTRVAGHPGHILMMKLKQLKSFIRSWANTQQSISSQLTNLVPNL 125
           + R  VE+WW+N RVAG P H +MMKLK LK   RSW N +   +++L +L+  L
Sbjct: 148 SFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQL 202

BLAST of CsaV3_7G025090 vs. ExPASy TrEMBL
Match: A0A5D3D3Q8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003050 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.5e-11
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = 0

Query: 74  VVESWWSNTRVAGHPGHILMMKLKQLKSFIRSWANTQQSISSQLTNLVPNLPNLDNLMDL 133
           +VE+WW+N RVAG P H LMMKLK L+ F+RSW N Q   +++L +L+  L  LDN+ + 
Sbjct: 28  LVETWWTNNRVAGWPRHGLMMKLKALQMFLRSW-NNQHREATKLPSLISQLRELDNIGNR 87

Query: 134 SHLTNEKLTSQHEIREQIENLTA 157
             L+ E+L++   +REQIE LTA
Sbjct: 88  IQLSVEQLSTSCLLREQIEQLTA 109

BLAST of CsaV3_7G025090 vs. ExPASy TrEMBL
Match: A0A0A0KDG4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G400290 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-07
Identity = 51/165 (30.91%), Postives = 81/165 (49.09%), Query Frame = 0

Query: 4   ISWNVQALDAIDSSGGIIVLWSAPDFTVQEIIQEIYDLAGVGTDSWILGGGFIVTR---T 63
           I W    LD ID+ GG++++W +PDFT   +++E+ DL G+G DSWI GG   +TR    
Sbjct: 56  IDWT--TLDVIDTLGGLLIIWRSPDFT---LLEELDDLVGLGGDSWINGGDLNITRWSWE 115

Query: 64  MTIPSLLVNNLRHVVESWWSNTRVAG------HPGHILMMKLKQLKSFIR---SWANTQQ 123
            +    + NN++ +   W +N  +         P  ++   +       R   SW +T  
Sbjct: 116 KSHDQFIPNNMQ-LFNQWIANYHLRDIVTLDHFPPAMIACDIDWGPCPFRIEKSWLSTPL 175

Query: 124 SISSQLTNLVPN-LPNLDNLMDLSHLTNEKLTSQHEIREQIENLT 156
            +    T    N L  LDN+ + + L  E+L++    REQIE LT
Sbjct: 176 FLPLVETWWTNNRLRELDNIGNKTQLFVEQLSTSRSSREQIEQLT 214

BLAST of CsaV3_7G025090 vs. ExPASy TrEMBL
Match: A0A5D3D2A8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G002760 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.8e-07
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 3   IISWNVQALDAIDSSGGIIVLWSAPDFTVQEIIQEIY-------DLAGVGTDSWILGGGF 60
           II W+   +DAID+S G+I L SAPDFTV ++IQ +Y       DLAG+G DSWI+GG F
Sbjct: 88  IIGWS--EIDAIDTSDGLI-LRSAPDFTVHDVIQGLYIVSIQLDDLAGLGGDSWIVGGNF 147

BLAST of CsaV3_7G025090 vs. ExPASy TrEMBL
Match: A0A0A0KMS2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G314840 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 8.2e-05
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 0

Query: 70  NLRHVVESWWSNTRVAGHPGHILMMKLKQLKSFIRSWANTQQSISSQLTNLVPNL 125
           + R  VE+WW+N RVAG P H +MMKLK LK   RSW N +   +++L +L+  L
Sbjct: 61  SFRPPVETWWTNNRVAGWPRHGMMMKLKALKCSFRSWNNNKHREATKLPSLISQL 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646206.14.5e-82100.00hypothetical protein Csa_016786 [Cucumis sativus][more]
KAE8647279.13.4e-1333.33hypothetical protein Csa_002929 [Cucumis sativus][more]
TYK17996.19.3e-1149.40reverse transcriptase [Cucumis melo var. makuwa][more]
TYK17414.11.8e-0656.25hypothetical protein E5676_scaffold434G002760 [Cucumis melo var. makuwa][more]
KAE8648339.11.7e-0447.27hypothetical protein Csa_023126 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D3Q84.5e-1149.40Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30... [more]
A0A0A0KDG45.2e-0730.91Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G400290 PE=4 SV=1[more]
A0A5D3D2A88.8e-0756.25Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KMS28.2e-0547.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G314840 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G025090.1CsaV3_7G025090.1mRNA