CsaV3_7G024500 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGGATGGGTTTGAAATTAAAGAATTGGAGAATCTGAAGTACTTCCTTGGGATGGAGGTTGCTAGGTTCAGAGAGCGCATCTCCATATACACCCTTGATTTATTAGCTGAAACAAGTATGACGGGACGTCGTCTTGCTGATACATCCATTGAGTTCAATGCCAAACTAAAAAATTCAGGTGATAGGATTCCTATTGATAAAAAGAAATATCAATGCCTTGTGGGAAAGTTGATTTACTTGTCTCATACTAGGCCTGACATCTCCTATGCTGTGAGTACTGTCAGTCAGTTCATGCAAACTCCTTATGAAGACCACATGGAGGCAGTTAATAGATTTCCAAGGTTGAGGTTCAAGTAG ATGAAGGATGGGTTTGAAATTAAAGAATTGGAGAATCTGAAGTACTTCCTTGGGATGGAGGTTGCTAGGTTCAGAGAGCGCATCTCCATATACACCCTTGATTTATTAGCTGAAACAAGTATGACGGGACGTCGTCTTGCTGATACATCCATTGAGTTCAATGCCAAACTAAAAAATTCAGGTGATAGGATTCCTATTGATAAAAAGAAATATCAATGCCTTGTGGGAAAGTTGATTTACTTGTCTCATACTAGGCCTGACATCTCCTATGCTGTGAGTACTGTCAGTCAGTTCATGCAAACTCCTTATGAAGACCACATGGAGGCAGTTAATAGATTTCCAAGGTTGAGGTTCAAGTAG ATGAAGGATGGGTTTGAAATTAAAGAATTGGAGAATCTGAAGTACTTCCTTGGGATGGAGGTTGCTAGGTTCAGAGAGCGCATCTCCATATACACCCTTGATTTATTAGCTGAAACAAGTATGACGGGACGTCGTCTTGCTGATACATCCATTGAGTTCAATGCCAAACTAAAAAATTCAGGTGATAGGATTCCTATTGATAAAAAGAAATATCAATGCCTTGTGGGAAAGTTGATTTACTTGTCTCATACTAGGCCTGACATCTCCTATGCTGTGAGTACTGTCAGTCAGTTCATGCAAACTCCTTATGAAGACCACATGGAGGCAGTTAATAGATTTCCAAGGTTGAGGTTCAAGTAG MKDGFEIKELENLKYFLGMEVARFRERISIYTLDLLAETSMTGRRLADTSIEFNAKLKNSGDRIPIDKKKYQCLVGKLIYLSHTRPDISYAVSTVSQFMQTPYEDHMEAVNRFPRLRFK* Homology
BLAST of CsaV3_7G024500 vs. NCBI nr
Match: KAE8646180.1 (hypothetical protein Csa_016260 [Cucumis sativus]) HSP 1 Score: 239.2 bits (609), Expect = 1.8e-59 Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. NCBI nr
Match: KAA0054884.1 (Beta-galactosidase [Cucumis melo var. makuwa]) HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38 Identity = 87/119 (73.11%), Postives = 96/119 (80.67%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. NCBI nr
Match: KAA0035088.1 (Beta-galactosidase [Cucumis melo var. makuwa]) HSP 1 Score: 167.2 bits (422), Expect = 8.9e-38 Identity = 86/119 (72.27%), Postives = 96/119 (80.67%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. NCBI nr
Match: KAA0055040.1 (reverse transcriptase [Cucumis melo var. makuwa]) HSP 1 Score: 166.4 bits (420), Expect = 1.5e-37 Identity = 86/119 (72.27%), Postives = 96/119 (80.67%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. NCBI nr
Match: KAA0061447.1 (Beta-galactosidase [Cucumis melo var. makuwa]) HSP 1 Score: 165.2 bits (417), Expect = 3.4e-37 Identity = 86/119 (72.27%), Postives = 95/119 (79.83%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 1.5e-16 Identity = 50/116 (43.10%), Postives = 73/116 (62.93%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 6.5e-15 Identity = 47/115 (40.87%), Postives = 66/115 (57.39%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 2.1e-05 Identity = 35/123 (28.46%), Postives = 60/123 (48.78%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1) HSP 1 Score: 47.8 bits (112), Expect = 1.0e-04 Identity = 32/102 (31.37%), Postives = 49/102 (48.04%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2) HSP 1 Score: 47.8 bits (112), Expect = 1.0e-04 Identity = 32/117 (27.35%), Postives = 59/117 (50.43%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. ExPASy TrEMBL
Match: A0A5A7UI90 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold406G001080 PE=4 SV=1) HSP 1 Score: 170.2 bits (430), Expect = 5.1e-39 Identity = 87/119 (73.11%), Postives = 96/119 (80.67%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. ExPASy TrEMBL
Match: A0A5A7SWV4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G001620 PE=4 SV=1) HSP 1 Score: 167.2 bits (422), Expect = 4.3e-38 Identity = 86/119 (72.27%), Postives = 96/119 (80.67%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. ExPASy TrEMBL
Match: A0A5A7UIG1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G002070 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 7.4e-38 Identity = 86/119 (72.27%), Postives = 96/119 (80.67%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. ExPASy TrEMBL
Match: A0A5A7V3J5 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00020 PE=4 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 1.6e-37 Identity = 86/119 (72.27%), Postives = 95/119 (79.83%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. ExPASy TrEMBL
Match: A0A5D3DLC9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002380 PE=4 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 2.1e-37 Identity = 85/119 (71.43%), Postives = 95/119 (79.83%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 ) HSP 1 Score: 79.7 bits (195), Expect = 1.7e-15 Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = 0
BLAST of CsaV3_7G024500 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 47.8 bits (112), Expect = 7.3e-06 Identity = 32/102 (31.37%), Postives = 49/102 (48.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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