CsaV3_7G023990 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G023990
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 13006080 .. 13006669 (+)
RNA-Seq ExpressionCsaV3_7G023990
SyntenyCsaV3_7G023990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGGTTCTGACACTAAAGGAACTTGTCGCATTCTGTCTGTACCAACTTGGCACTCCTGCTTTTTATGAGCGATTTTATTGTGGATTTTGTCGAGAATCGAGATTTTTCCACAGGTTTTGATACTGAAACAACCTGACGCATTCTAGCACGAAGAGGCTTGACACTCCTACTTTCTGCGAGTGATTGTATTGTGGCTTTAGTTGATAGTCGAGAGTTCCCAAAGGAAATTCAGATATCGAAGGAACTTGACGCATTTTGGCCCAAAGCAGCTTGGCTCTCCTACTTTCTGTGAGTGATTGTATTGTGGCTTCAATTGAGAATAAAGAGTTCCCAAAGGAAATTCATACACCGAAGGAACTTGACGCATTCTGGTCCGAAGCAGCTTGGCTCTCCTACTTTCTGCGAGTGATTGTATTGTGGCTTTAGTTGAGAATCGAGAGTTCCCAAGGGACATTCAGATACCGAAGGAACTTGACGCATTATGGTCCGAAGCAGCTTGGCTCTCCTACTTTCTACGATTGATTGAATTGTTGCTTCATTTGAGAATCAAGAGTTCCAAAGCAAATTCAGATACCGAAGGAACTTGA

mRNA sequence

AGGAACTTGTCGCATTCTGTCTGTACCAACTTGGCACTCCTGCTTTTTATGAGCGATTTTATTGTGGATTTTGTCGAGAATCGAGATTTTTCCACAGTCGAGAGTTCCCAAAGGAAATTCAGATATCGAAGGAACTTGACGCATTTTGGCCCAAAGCAGCTTGGCTCTCCTACTTTCTGTGACAGCTTGGCTCTCCTACTTTCTGCGAGTGATTGTATTGTGGCTTTAGTTGAGAATCGAGAGTTCCCAAGGGACATTCAGATACCGAAGGAACTTGACGCATTATGGTCCGAAGCAGCTTGGCTCTCCTACTTTCTACGATTGATTGAATTGTTGCTTCATTTGAGAATCAAGAGTTCCAAAGCAAATTCAGATACCGAAGGAACTTG

Coding sequence (CDS)

AGGAACTTGTCGCATTCTGTCTGTACCAACTTGGCACTCCTGCTTTTTATGAGCGATTTTATTGTGGATTTTGTCGAGAATCGAGATTTTTCCACAGTCGAGAGTTCCCAAAGGAAATTCAGATATCGAAGGAACTTGACGCATTTTGGCCCAAAGCAGCTTGGCTCTCCTACTTTCTGTGACAGCTTGGCTCTCCTACTTTCTGCGAGTGATTGTATTGTGGCTTTAGTTGAGAATCGAGAGTTCCCAAGGGACATTCAGATACCGAAGGAACTTGACGCATTATGGTCCGAAGCAGCTTGGCTCTCCTACTTTCTACGATTGATTGAATTGTTGCTTCATTTGAGAATCAAGAGTTCCAAAGCAAATTCAGATACCGAAGGAACTTG

Protein sequence

RNLSHSVCTNLALLLFMSDFIVDFVENRDFSTVESSQRKFRYRRNLTHFGPKQLGSPTFCDSLALLLSASDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSSKANSDTEGTX
Homology
BLAST of CsaV3_7G023990 vs. NCBI nr
Match: KGN44662.2 (hypothetical protein Csa_023846, partial [Cucumis sativus])

HSP 1 Score: 259.6 bits (662), Expect = 1.4e-65
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0

Query: 1   RNLSHSVCTNLALLLFMSDFIVDFVENRDFSTVESSQRKFRYRRNLTHFGPKQLGSPTFC 60
           RNLSHSVCTNLALLLFMSDFIVDFVENRDFSTVESSQRKFRYRRNLTHFGPKQLGSPTFC
Sbjct: 1   RNLSHSVCTNLALLLFMSDFIVDFVENRDFSTVESSQRKFRYRRNLTHFGPKQLGSPTFC 60

Query: 61  DSLALLLSASDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSS 120
           DSLALLLSASDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSS
Sbjct: 61  DSLALLLSASDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSS 120

Query: 121 KANSDTEGT 130
           KANSDTEGT
Sbjct: 121 KANSDTEGT 129

BLAST of CsaV3_7G023990 vs. NCBI nr
Match: KGN44397.1 (hypothetical protein Csa_016042 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-08
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 62  SLALLLSASDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLI 110
           +LALLLS SDCI A + +REFP+ I IPKELD+ W E AWLSYFLR+I
Sbjct: 181 NLALLLSTSDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVI 228

BLAST of CsaV3_7G023990 vs. NCBI nr
Match: KAE8652988.1 (hypothetical protein Csa_023488 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-06
Identity = 32/50 (64.00%), Postives = 35/50 (70.00%), Query Frame = 0

Query: 71  DCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSS 121
           DCIVA  E+REFP  I IPK+ D  W E AWLSYFLR I L L  R+KSS
Sbjct: 3   DCIVASAESREFPMQILIPKKPDTFWHEEAWLSYFLREIVLWLLPRVKSS 52

BLAST of CsaV3_7G023990 vs. ExPASy TrEMBL
Match: A0A0A0K653 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279810 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.2e-47
Identity = 97/104 (93.27%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 26  ENRDFSTVESSQRKFRYRRNLTHFGPKQLGSPTFCDSLALLLSASDCIVALVENREFPRD 85
           E+R F  ++SSQRKFRYRRNLTH GPKQLGSPTFCDSLALLLSASDCIVALVENREFPRD
Sbjct: 33  ESRFFHRIKSSQRKFRYRRNLTHSGPKQLGSPTFCDSLALLLSASDCIVALVENREFPRD 92

Query: 86  IQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSSKANSDTEGT 130
           IQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSSKANSDTEGT
Sbjct: 93  IQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSSKANSDTEGT 136

BLAST of CsaV3_7G023990 vs. ExPASy TrEMBL
Match: A0A0A0K4J2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279850 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.2e-10
Identity = 49/113 (43.36%), Postives = 61/113 (53.98%), Query Frame = 0

Query: 12  ALLLFMSDFIVDFVENRDFSTVESSQRKFRYRRNLTHFGPKQLGSPTFCDS----LALLL 71
           ALLL  SD  V   ++R+F T      K    +      PK      F  +    LA L 
Sbjct: 455 ALLLSTSDCNVASTKSREFPT------KVLIPKEPDALWPKAAWLSYFLRAIVIGLAPLF 514

Query: 72  SASDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLIELLLHLRIKSS 121
           S  DCI A +E+REFP  + IPKE DALW +AAWLSYFLR I + L  R++SS
Sbjct: 515 STGDCIGASIESREFPTKVLIPKEPDALWPKAAWLSYFLRAIVMWLRPRVESS 561

BLAST of CsaV3_7G023990 vs. ExPASy TrEMBL
Match: A0A0A0K7T2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279790 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.0e-09
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 62  SLALLLSASDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLRLI 110
           +LALLLS SDCI A + +REFP+ I IPKELD+ W E AWLSYFLR+I
Sbjct: 181 NLALLLSTSDCIEASILSREFPKRILIPKELDSFWPEMAWLSYFLRVI 228

BLAST of CsaV3_7G023990 vs. ExPASy TrEMBL
Match: A0A0A0K647 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279760 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.8e-04
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 0

Query: 61  DSLALLLSASDCIVALVENREFPRDIQIPKELDALWSEAAWLSYFLR 108
           D LALLLS  +CIVA +E+REFP      KE +A   +  WLSYFLR
Sbjct: 8   DGLALLLSTGECIVASIESREFPTQALKLKEPNAFSPDVGWLSYFLR 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN44662.21.4e-65100.00hypothetical protein Csa_023846, partial [Cucumis sativus][more]
KGN44397.11.2e-0868.75hypothetical protein Csa_016042 [Cucumis sativus][more]
KAE8652988.11.2e-0664.00hypothetical protein Csa_023488 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K6534.2e-4793.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279810 PE=4 SV=1[more]
A0A0A0K4J29.2e-1043.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279850 PE=4 SV=1[more]
A0A0A0K7T26.0e-0968.75Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279790 PE=4 SV=1[more]
A0A0A0K6479.8e-0455.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G279760 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G023990.1CsaV3_7G023990.1mRNA