CsaV3_7G023150 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G023150
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 12122377 .. 12125139 (-)
RNA-Seq ExpressionCsaV3_7G023150
SyntenyCsaV3_7G023150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCGATTTTCTCGTAATGGTATCCACTCGCAAAGGCAATTATCGTTCCTCCACTTCTCCATTGCTTCAGGTACGGCTGTCTGTCAAAGTTCATCCTATAATAATCCATCGTCTCGATCTACAAATGCTTTGTTGCCTCCTTCAAAGCAAATCAAGATGATACTTTAGTGGTGACCTAGGTTACGCAACATTAGCCTTGTGGATTCGCAACCTAAACAAGGTGCCTCTTCACCCTTGCATGGTGCGACTTCTTCAGTTTGAGCCTTTTGTGGCTCCTTTTGCTTCTCGACCCTCTACTTCGGATTCCCCTACTTTGAATAGATCTACTCGCCCTTCTGTTGATCCTTAAGTTTCTACTTCTTGGTTGTTTTTCGAGTACCAAATGGTTGTTTTTCAGTGTGTTATGATCATGAGGCGCCTCATGTTAATTCTGATATGTCTAGTGTGGTATCTAATTCCTCATATGAAAATCACATTGCTATTGCTCGACTTGTGCAATGTACTTGAAGGACTTCTATTACATCTCCTCGTCGCTCTCCTCATGGTTCCTTTCACCCCACAGAGAAGGTTTCTGCTACCTCTGCAAATTTTCTGCTCCAAATGTTGATGACTCTACCCCTGACGTTACTATCAAAACCACTGCTCTTGGCATTCCTGACCCTACGCTTGTGAATAATGTTGCACCCCTTAGTTCATCTGCTCATGTAGTGGGCACTCCTACTTCAACAGAAAGGGTGTCTCCTTCAGTTAGTTCTTTTGTGCCTTCACCTCCAAAGCCTCCACGACGTCCTGTTTTCAAGGGTAAAAAAGTTATCATTACAAAGGTTGGAAGAAGAAAGCTGCCACCAAGTTTCCTTTTGTTCCAATTGATGGGGTGTCATTCCATTTGTAGGATAATGTCCAAAAATGGAAGTATGTGGTCCAACGATGCATTGCAAATAAGGTAAATATTTCTGATCAACATTATTTTTGCTTAGTTGTTATGGAACTAATTAATCGAGCTGGGTTGACTAGAATCGTCACTACTATTGGTCCTTTTTATCCTCGGTTAATTCGTTAATTAATTGTTAATTTACTTCCTAAGTTTAATGATCCTAGTGCTGCTGAATTTAAAAAAGTTCATGTTTGAGCGTTTTGCTTCAATATTTGTCCATTTATAATAAATCGGTTTCTAGGTGTCAGTCTCCCTCTTGATTTTTCCATCACTCTTTCTACCCTTGAGATGTTGGCCCTAAAGTTAATTGGAGGGACTCTGAATGTAATGGATGCTGATGGACAACTTTTCATTCTCTCTCTCAATGTCAAATATGTCATTCTTCACAAGATTGACATTTCTAATTGGTACCCCTCAACCCATGCTTCAATCGTTTCCACTGCATTGGTTAACTTAATTTATCTTATTGGAACCGATGCTCTAGTGACTGCGGGTCAGTTTGTCTTTAATAATCTTTTGAGACATGTTGAGATATTTGGTATCGAGATCCCAATTTGCTTCCCTTGCCTTCTGTGTGAAATTTTGCTTGAGCAACATCCTTTGGTTCTGACTGAACATGGTGCTTTTGGTCCTGTTCCAAAGACGATCACCTTGAGTTAGTACCTCTTTCAAGGATTCCATGTTTATGATATTGCTTATAATATTTCTCCACCGAGGGGGGTTGATGAGGATCTTCTAACTGGTGTACGAACGTCAAATGATGGGATGTTGCTCTCTCATGCTCTGGCCACTCGCATTTTGGATCTTCTCTACTGAGCTCACTCTCTTAGTGGAGCTATTCAATCTCTAGGTAGTGTCATCCATGTGTTGACAGAGAGACGATCAACTGTTGATTCCATGCTCCAGTTTCTCACTAAGCTTCTTCCAACTAATGGCGAGGGATCATCTAATTAGTGCCCCAACCTCTTGATTTTTATTTCTTTATGCAAGCAAGAGGGAGTAGTGGGAAAAAAAAGGTAGGGTTGTTTTGTTTGTTTTTGTGATTGGTCGGCTGTGGAATAATTTGTTTGGACTACTTATTTTGGTTTCTAGACTTCTTTTCTGGATCTTTTACTGCTTCTAGGATTGTTGTTTCTTTTGGTCTTCTTTTGTGCTTATTGGATTTTTTTACTGAAATATATATCTTGGTTGCTTTTATAGTTTATATCTTTGTTTGGTTGGTTAACGTTGTGGTTGTTTGCTGGTGCTTATTTGGACAAATAAAAGAAAATGGTCTCAAAGGGGGAGTTTGTTATGTCGGTTTCTCTAATTTTCTTTTATTTATTTATTTGTTTGTTTAAATGGTTAGTCTTATCTTTTATTCTAACCAACCGAAAGATTTGCTGTTTTGAGTTGTTTGGATTCGAGTGAATTTTATGGAGTTGGTTTTGTGTTTTGTTGTGGGCTTTTATGTGTAGGTTTGTCGCCTTTGTGATGGGTGGCTTTTCGACATAAACTGTGAGTTTGAATCTTCATGGAGTGCACAAGCTGGTGTATCTCTAATCTTGGTGAGTTTATCACCCGTGGTATCTGACTATTGAGATAGTTTATGGTTGAAAAAGTAGAAGCGAAGGGGTCGTAAATGGTCAACGAATCAATGTTTGACAGCTAAACCGCTTTGTGATATCTAATTTAGGGGGAACATACCCTGGTGTACATGAGACAAGTTCGGTCTAGAATACTCCAAGGATATAGTATCGGTAAACTTGGATTGACTGTGTACATCATTATTATATTTTGATGTGTATACATTTGTCAATAATCATGTACTTATAAACTATTTCATAAGGC

mRNA sequence

ATGTACTTGAAGGACTTCTATTACATCTCCTCGTCGCTCTCCTCATGGTTCCTTTCACCCCACAGAGAAGGTTTCTGCTACCTCTGCAAATTTTCTGCTCCAAATGTTGATGACTCTACCCCTGACGTTACTATCAAAACCACTGCTCTTGGCATTCCTGACCCTACGCTTGTGAATAATGTTGCACCCCTTAGTTCATCTGCTCATGTAGTGGGCACTCCTACTTCAACAGAAAGGGTGTCTCCTTCAGTTAGTTCTTTTGTGCCTTCACCTCCAAAGCCTCCACGACGTCCTGTTTTCAAGGGTAAAAAAGTTATCATTACAAAGGTTGGAAGAAGAAAGCTGCCACCAAGTTTCCTTTTGTTCCAATTGATGGGGTGTCATTCCATTTGTAGGATAATGTCCAAAAATGGAAGTATGTGGTCCAACGATGCATTGCAAATAAGGTTTGTCGCCTTTGTGATGGGTGGCTTTTCGACATAA

Coding sequence (CDS)

ATGTACTTGAAGGACTTCTATTACATCTCCTCGTCGCTCTCCTCATGGTTCCTTTCACCCCACAGAGAAGGTTTCTGCTACCTCTGCAAATTTTCTGCTCCAAATGTTGATGACTCTACCCCTGACGTTACTATCAAAACCACTGCTCTTGGCATTCCTGACCCTACGCTTGTGAATAATGTTGCACCCCTTAGTTCATCTGCTCATGTAGTGGGCACTCCTACTTCAACAGAAAGGGTGTCTCCTTCAGTTAGTTCTTTTGTGCCTTCACCTCCAAAGCCTCCACGACGTCCTGTTTTCAAGGGTAAAAAAGTTATCATTACAAAGGTTGGAAGAAGAAAGCTGCCACCAAGTTTCCTTTTGTTCCAATTGATGGGGTGTCATTCCATTTGTAGGATAATGTCCAAAAATGGAAGTATGTGGTCCAACGATGCATTGCAAATAAGGTTTGTCGCCTTTGTGATGGGTGGCTTTTCGACATAA

Protein sequence

MYLKDFYYISSSLSSWFLSPHREGFCYLCKFSAPNVDDSTPDVTIKTTALGIPDPTLVNNVAPLSSSAHVVGTPTSTERVSPSVSSFVPSPPKPPRRPVFKGKKVIITKVGRRKLPPSFLLFQLMGCHSICRIMSKNGSMWSNDALQIRFVAFVMGGFST*
Homology
[Close]
BLAST of CsaV3_7G023150 vs. NCBI nr
Match: XP_031744394.1 (uncharacterized protein LOC116405024 [Cucumis sativus] >KAE8646122.1 hypothetical protein Csa_016296 [Cucumis sativus])

HSP 1 Score: 323.2 bits (827), Expect = 1.3e-84
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0 

Query: 1   MYLKDFYYISSSLSSWFLSPHREGFCYLCKFSAPNVDDSTPDVTIKTTALGIPDPTLVNN 60
           MYLKDFYYISSSLSSWFLSPHREGFCYLCKFSAPNVDDSTPDVTIKTTALGIPDPTLVNN
Sbjct: 1   MYLKDFYYISSSLSSWFLSPHREGFCYLCKFSAPNVDDSTPDVTIKTTALGIPDPTLVNN 60

Query: 61  VAPLSSSAHVVGTPTSTERVSPSVSSFVPSPPKPPRRPVFKGKKVIITKVGRRKLPPSFL 120
           VAPLSSSAHVVGTPTSTERVSPSVSSFVPSPPKPPRRPVFKGKKVIITKVGRRKLPPSFL
Sbjct: 61  VAPLSSSAHVVGTPTSTERVSPSVSSFVPSPPKPPRRPVFKGKKVIITKVGRRKLPPSFL 120

Query: 121 LFQLMGCHSICRIMSKNGSMWSNDALQIRFVAFVMGGFST 161
           LFQLMGCHSICRIMSKNGSMWSNDALQIRFVAFVMGGFST
Sbjct: 121 LFQLMGCHSICRIMSKNGSMWSNDALQIRFVAFVMGGFST 160

[Close]
BLAST of CsaV3_7G023150 vs. NCBI nr
Match: TYK09630.1 (hypothetical protein E5676_scaffold447G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-13
Identity = 51/82 (62.20%), Postives = 57/82 (69.51%), Query Frame = 0 

Query: 33  APNVDDSTPDVTIKTTALGIPDPTLVNNVAPLSSSAHVVGTPTSTERVSPSVSSFVPSPP 92
           AP VDDSTP  TI TTA  + D T V+N  P SS AH  G PTST+RVSP V S VP P 
Sbjct: 228 APFVDDSTPSDTIDTTAPRLLDSTPVDNSTPPSSYAHAKGAPTSTKRVSPLVGSSVPLPY 287

Query: 93  KPPRRPVFKGKKVIITKVGRRK 115
           KPP+RP FKG+KVI TK  +RK
Sbjct: 288 KPPQRPSFKGQKVITTKARQRK 309

[Close]
BLAST of CsaV3_7G023150 vs. NCBI nr
Match: KAA0025826.1 (hypothetical protein E6C27_scaffold34G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-13
Identity = 51/82 (62.20%), Postives = 57/82 (69.51%), Query Frame = 0 

Query: 33  APNVDDSTPDVTIKTTALGIPDPTLVNNVAPLSSSAHVVGTPTSTERVSPSVSSFVPSPP 92
           AP VDDSTP  TI TTA  + D T V+N  P SS AH  G PTST+RVSP V S VP P 
Sbjct: 61  APFVDDSTPSDTIDTTAPRLLDSTPVDNSTPPSSYAHAKGAPTSTKRVSPLVGSSVPLPY 120

Query: 93  KPPRRPVFKGKKVIITKVGRRK 115
           KPP+RP FKG+KVI TK  +RK
Sbjct: 121 KPPQRPSFKGQKVITTKARQRK 142

[Close]
BLAST of CsaV3_7G023150 vs. ExPASy TrEMBL
Match: A0A5A7SJ51 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G00830 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.8e-14
Identity = 51/82 (62.20%), Postives = 57/82 (69.51%), Query Frame = 0 

Query: 33  APNVDDSTPDVTIKTTALGIPDPTLVNNVAPLSSSAHVVGTPTSTERVSPSVSSFVPSPP 92
           AP VDDSTP  TI TTA  + D T V+N  P SS AH  G PTST+RVSP V S VP P 
Sbjct: 61  APFVDDSTPSDTIDTTAPRLLDSTPVDNSTPPSSYAHAKGAPTSTKRVSPLVGSSVPLPY 120

Query: 93  KPPRRPVFKGKKVIITKVGRRK 115
           KPP+RP FKG+KVI TK  +RK
Sbjct: 121 KPPQRPSFKGQKVITTKARQRK 142

[Close]
BLAST of CsaV3_7G023150 vs. ExPASy TrEMBL
Match: A0A5D3CE62 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00260 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.8e-14
Identity = 51/82 (62.20%), Postives = 57/82 (69.51%), Query Frame = 0 

Query: 33  APNVDDSTPDVTIKTTALGIPDPTLVNNVAPLSSSAHVVGTPTSTERVSPSVSSFVPSPP 92
           AP VDDSTP  TI TTA  + D T V+N  P SS AH  G PTST+RVSP V S VP P 
Sbjct: 228 APFVDDSTPSDTIDTTAPRLLDSTPVDNSTPPSSYAHAKGAPTSTKRVSPLVGSSVPLPY 287

Query: 93  KPPRRPVFKGKKVIITKVGRRK 115
           KPP+RP FKG+KVI TK  +RK
Sbjct: 288 KPPQRPSFKGQKVITTKARQRK 309

The following BLAST results are available for this feature:
BLAST of CsaV3_7G023150 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_031744394.11.3e-84100.00uncharacterized protein LOC116405024 [Cucumis sativus] >KAE8646122.1 hypothetica... [more]
TYK09630.11.2e-1362.20hypothetical protein E5676_scaffold447G00260 [Cucumis melo var. makuwa][more]
KAA0025826.11.2e-1362.20hypothetical protein E6C27_scaffold34G00830 [Cucumis melo var. makuwa][more]
BLAST of CsaV3_7G023150 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G023150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SJ515.8e-1462.20Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CE625.8e-1462.20Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_7G023150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G023150.1CsaV3_7G023150.1mRNA