CsaV3_7G022520 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGCATTTATTCATGCAAAGATCTGCCCTACGACTATTTCAACATTGGATAGAAGCTTAATAAGTGAATATGGTCGTAAGTAACATCTCTTGTTTGTAAGCCCGTTAGTTACCTTCTGTGTTGAATCTGAAACGTTGCCTAATATATTTGCAAGTTATTTTTCTTAGCTGTCGTCATTTATAACATGTCTTAAGATTCTTTTGATGCTTCAAACATTCAAAATGTATTGCAGCAGAGGCTTTATTCCTGAATGCCGTATCATTTATACATATTATTGGTCAAAACTCATTTTGAATTAGTGATAATCTAGTTCTTTCTTTCCAACCATTTGGTCCGTCCTTCTACTATATTAATTTATAAATTGATTGGAGATCGAGTTTGTTTACAAACTATAAAGACTAAACCATTATATTATAAAATCTTGAAACTTAATTTTTGAAAAGATTTGGAAGTATTAAGACTAGTTAAAGTTTATGGATTGAATTATTCCATGTAGGAAAGTTTAGGACGAGTATTTTTTAACCTATTTACAATTCTCTTGTTCTGAATCTGAATGCACCTGGACATAAGCTTCATTCTTGTACTATTTCTTTATTGACTGTCTTATGCAACATAACAGGTAAACTACCATCCAGGTCTCGAGTAGTGCTTCCATATCAAGAAGTTTGTAGACGTCATTTGGTATGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTTCGGCCCAGGCCGAAGAAATGCCAAATAACATGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAAAAAACCAAATCAGGGAAAATATTGCCAAAGGCTTACTTGAAGTCTGCAAGGGAGGTGGTGAAAACGCTGCGTGAGTCATTGCAGGAAGACCCCAAGGATGGTGCTAAATTTAGACGAACTGCGGATGCTGCAAAAGAATCCATTCGTGACTATTTAAGCAATTGGTTGGGGAAACAAACAGTTGTTCAAGAGGTATGACAAGGGAAAAACAGATGATGTTACTTCATGAATGATGATCGTAGGGACTTTATAATAACAACGCTCACTCACGTGCAGGAATCTTACGTTGTATTAGAGAAAGCAATTAGGTCGTTGGCAGGATTTTATGCAAAGGCTGGGCCATCTGCGCCACTGCCAGAAGCGGTTAAATCTGATATTCTGGATGATTTGGATAAGGTTGAAGAATCCTTGTAA ATGGCTGCATTTATTCATGCAAAGATCTGCCCTACGACTATTTCAACATTGGATAGAAGCTTAATAAGTGAATATGGTCGTAAACTACCATCCAGGTCTCGAGTAGTGCTTCCATATCAAGAAGTTTGTAGACGTCATTTGGTATGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTTCGGCCCAGGCCGAAGAAATGCCAAATAACATGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAAAAAACCAAATCAGGGAAAATATTGCCAAAGGCTTACTTGAAGTCTGCAAGGGAGGTGGTGAAAACGCTGCGTGAGTCATTGCAGGAAGACCCCAAGGATGGTGCTAAATTTAGACGAACTGCGGATGCTGCAAAAGAATCCATTCGTGACTATTTAAGCAATTGGTTGGGGAAACAAACAGTTGTTCAAGAGGAATCTTACGTTGTATTAGAGAAAGCAATTAGGTCGTTGGCAGGATTTTATGCAAAGGCTGGGCCATCTGCGCCACTGCCAGAAGCGGTTAAATCTGATATTCTGGATGATTTGGATAAGGTTGAAGAATCCTTGTAA ATGGCTGCATTTATTCATGCAAAGATCTGCCCTACGACTATTTCAACATTGGATAGAAGCTTAATAAGTGAATATGGTCGTAAACTACCATCCAGGTCTCGAGTAGTGCTTCCATATCAAGAAGTTTGTAGACGTCATTTGGTATGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTTCGGCCCAGGCCGAAGAAATGCCAAATAACATGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAAAAAACCAAATCAGGGAAAATATTGCCAAAGGCTTACTTGAAGTCTGCAAGGGAGGTGGTGAAAACGCTGCGTGAGTCATTGCAGGAAGACCCCAAGGATGGTGCTAAATTTAGACGAACTGCGGATGCTGCAAAAGAATCCATTCGTGACTATTTAAGCAATTGGTTGGGGAAACAAACAGTTGTTCAAGAGGAATCTTACGTTGTATTAGAGAAAGCAATTAGGTCGTTGGCAGGATTTTATGCAAAGGCTGGGCCATCTGCGCCACTGCCAGAAGCGGTTAAATCTGATATTCTGGATGATTTGGATAAGGTTGAAGAATCCTTGTAA MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTFNNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKVEESL* Homology
BLAST of CsaV3_7G022520 vs. NCBI nr
Match: XP_011659022.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X1 [Cucumis sativus] >KGN44248.1 hypothetical protein Csa_016399 [Cucumis sativus]) HSP 1 Score: 404.4 bits (1038), Expect = 5.7e-109 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. NCBI nr
Match: XP_011659023.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X2 [Cucumis sativus]) HSP 1 Score: 398.3 bits (1022), Expect = 4.1e-107 Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. NCBI nr
Match: XP_008447146.1 (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo] >XP_008447147.1 PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo] >XP_008447148.1 PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo]) HSP 1 Score: 380.2 bits (975), Expect = 1.2e-101 Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. NCBI nr
Match: KAA0040790.1 (photosystem II D1 precursor processing protein PSB27-H2 [Cucumis melo var. makuwa] >TYK17771.1 photosystem II D1 precursor processing protein PSB27-H2 [Cucumis melo var. makuwa]) HSP 1 Score: 378.3 bits (970), Expect = 4.4e-101 Identity = 192/206 (93.20%), Postives = 197/206 (95.63%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. NCBI nr
Match: XP_038875361.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida] >XP_038875362.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida]) HSP 1 Score: 348.2 bits (892), Expect = 4.9e-92 Identity = 182/206 (88.35%), Postives = 193/206 (93.69%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1) HSP 1 Score: 190.7 bits (483), Expect = 1.7e-47 Identity = 97/140 (69.29%), Postives = 117/140 (83.57%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. ExPASy Swiss-Prot
Match: P74367 (Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=psb27 PE=1 SV=2) HSP 1 Score: 52.0 bits (123), Expect = 9.4e-06 Identity = 32/106 (30.19%), Postives = 55/106 (51.89%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 6.8e-04 Identity = 27/102 (26.47%), Postives = 55/102 (53.92%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. ExPASy TrEMBL
Match: A0A0A0K400 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G234690 PE=3 SV=1) HSP 1 Score: 404.4 bits (1038), Expect = 2.8e-109 Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. ExPASy TrEMBL
Match: A0A1S3BG68 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489666 PE=3 SV=1) HSP 1 Score: 380.2 bits (975), Expect = 5.6e-102 Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. ExPASy TrEMBL
Match: A0A5D3D0K6 (Photosystem II D1 processing protein PSB27-H2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00120 PE=3 SV=1) HSP 1 Score: 378.3 bits (970), Expect = 2.1e-101 Identity = 192/206 (93.20%), Postives = 197/206 (95.63%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. ExPASy TrEMBL
Match: A0A6J1H448 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459969 PE=3 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 4.3e-86 Identity = 171/206 (83.01%), Postives = 182/206 (88.35%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. ExPASy TrEMBL
Match: A0A6J1CCV0 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009571 PE=3 SV=1) HSP 1 Score: 322.4 bits (825), Expect = 1.4e-84 Identity = 166/206 (80.58%), Postives = 180/206 (87.38%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related ) HSP 1 Score: 190.7 bits (483), Expect = 1.2e-48 Identity = 97/140 (69.29%), Postives = 117/140 (83.57%), Query Frame = 0
BLAST of CsaV3_7G022520 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein ) HSP 1 Score: 45.8 bits (107), Expect = 4.8e-05 Identity = 27/102 (26.47%), Postives = 55/102 (53.92%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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