CsaV3_7G022100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G022100
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionProtein SPIRRIG
Locationchr7: 10914700 .. 10914849 (+)
RNA-Seq ExpressionCsaV3_7G022100
SyntenyCsaV3_7G022100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACTGGTGGCCCTTCAACATATACAGAGCTTGAGGCAAAAGCTAGTGCGAACCACTTTGACTCCAAACAGGACGACATTAAGTTCAAGTTGGATTGGATGCACTTCAGATTGGACAGCATAGAGTCCTCCTTTATGACCAACTTG

mRNA sequence

ATGGACACTGGTGGCCCTTCAACATATACAGAGCTTGAGGCAAAAGCTAGTGCGAACCACTTTGACTCCAAACAGGACGACATTAAGTTCAAGTTGGATTGGATGCACTTCAGATTGGACAGCATAGAGTCCTCCTTTATGACCAACTTG

Coding sequence (CDS)

ATGGACACTGGTGGCCCTTCAACATATACAGAGCTTGAGGCAAAAGCTAGTGCGAACCACTTTGACTCCAAACAGGACGACATTAAGTTCAAGTTGGATTGGATGCACTTCAGATTGGACAGCATAGAGTCCTCCTTTATGACCAACTTG

Protein sequence

MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL
Homology
[Close]
BLAST of CsaV3_7G022100 vs. NCBI nr
Match: KAE8646068.1 (hypothetical protein Csa_015720, partial [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 1.0e-19
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL 51
          MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL
Sbjct: 1  MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL 50

[Close]
BLAST of CsaV3_7G022100 vs. ExPASy TrEMBL
Match: A0A0A0K798 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219280 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 4.9e-20
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL 51
          MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL
Sbjct: 1  MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL 50

[Close]
BLAST of CsaV3_7G022100 vs. ExPASy TrEMBL
Match: A0A5A7SJV4 (Protein SPIRRIG OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00490 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.9e-04
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 0 

Query: 1   MDTGGPSTYTELEAKASANHFDSKQDDIKFKLDWMHFRLDSIESSFMTNL 51
           +D GGPST +EL+ +ASA H D + D+I+FKL+ M  RLD ++ SF   L
Sbjct: 138 LDIGGPSTCSELKVEASAGHLDFRLDNIEFKLNHMDSRLDRVDFSFTVEL 187

The following BLAST results are available for this feature:
BLAST of CsaV3_7G022100 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646068.11.0e-19100.00hypothetical protein Csa_015720, partial [Cucumis sativus][more]
BLAST of CsaV3_7G022100 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G022100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7984.9e-20100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219280 PE=4 SV=1[more]
A0A5A7SJV44.9e-0450.00Protein SPIRRIG OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G004... [more]
BLAST of CsaV3_7G022100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G022100.1CsaV3_7G022100.1mRNA