Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCCAAACGTCCTGTCACTACCACTTTTGCTCTTGCCTCATCCCATGCCAAGCAATCTACTGATACCATGATTGATAACCTGTTTGTCGAATTTGCTCGGGATCCTGAGGTTCTAGGCTATTGTGCTCACCTGCACTCATCTTTTGCTGACAGTGCTATTGAGTCGGCTCCACATCCTGATTTCACATCTACCTCTATACCCGGTCCTCCATCGGTATGTGATGAGTACACCGCTTCAGGAGCTAAGCCTACTGCTATTGAGTTAGTTCCTAGTTTTTCCCATGGTCCTCTGAAGTTTCAGGCCCATGTTTCCTCTTGTGGGCAAGAAGTTGTTACCACAAAGTCTAGCTGAAGCAAGCTTCCTCAAAATGTACCTGCCGTTCCTATTGATGTATATCATTTGATTCTGAAGATTGTGTCCATAAGTGGAAGTAAGTTGTACAACGTTGTATTGCTGACGAGTCCGAAATTTCCGATCAACATCGTTCCTGTTTTGTTGTAGTTAATTTGATCTCGTATACAAGGTTCTCTCTACTGTCTGCTGTTTATAACTTCTTTCCTAAACTTATTCGTGAGTTTATTGTAAACCTCCCTACTGATCTCAATGATCATGGAACGTGTGGCTTTCATAAAGTTCATGTTCGTGGAAACTGTTTTAAAGGGTCTCCTGCTCTTTTGAATTCCTTCTTGAATATTGTTCATTTGGCTTTGTTTTTTTTTTCTTTTGTCTCATTACCTACGTTGGAGCAACTTGCTTTAGAATTGTCTAGTGGTTTTGCTCGTCATTGA
mRNA sequence
ATGCAATCCAAACGTCCTGTCACTACCACTTTTGCTCTTGCCTCATCCCATGCCAAGCAATCTACTGATACCATGATTGATAACCTGTTTGTCGAATTTGCTCGGGATCCTGAGGTTCTAGGCTATTGTGCTCACCTGCACTCATCTTTTGCTGACAGTGCTATTGAGTCGGCTCCACATCCTGATTTCACATCTACCTCTATACCCGGTCCTCCATCGGTATGTGATGAGTACACCGCTTCAGGAGCTAAGCCTACTGCTATTGAGTTAGTTCCTAGTTTTTCCCATGGTCCTCTGAAGTTTCAGGCCCATGTTTCCTCTTTTAATTTGATCTCGTATACAAGGTTCTCTCTACTGTCTGCTGTTTATAACTTCTTTCCTAAACTTATTCGTGAGTTTATTGTAAACCTCCCTACTGATCTCAATGATCATGGAACGTGTGGCTTTCATAAAGTTCATGTTCGTGGAAACTGTTTTAAAGGGTCTCCTGCTCTTTTGAATTCCTTCTTGAATATTGTTCATTTGGCTTTGTTTTTTTTTTCTTTTGTCTCATTACCTACGTTGGAGCAACTTGCTTTAGAATTGTCTAGTGGTTTTGCTCGTCATTGA
Coding sequence (CDS)
ATGCAATCCAAACGTCCTGTCACTACCACTTTTGCTCTTGCCTCATCCCATGCCAAGCAATCTACTGATACCATGATTGATAACCTGTTTGTCGAATTTGCTCGGGATCCTGAGGTTCTAGGCTATTGTGCTCACCTGCACTCATCTTTTGCTGACAGTGCTATTGAGTCGGCTCCACATCCTGATTTCACATCTACCTCTATACCCGGTCCTCCATCGGTATGTGATGAGTACACCGCTTCAGGAGCTAAGCCTACTGCTATTGAGTTAGTTCCTAGTTTTTCCCATGGTCCTCTGAAGTTTCAGGCCCATGTTTCCTCTTTTAATTTGATCTCGTATACAAGGTTCTCTCTACTGTCTGCTGTTTATAACTTCTTTCCTAAACTTATTCGTGAGTTTATTGTAAACCTCCCTACTGATCTCAATGATCATGGAACGTGTGGCTTTCATAAAGTTCATGTTCGTGGAAACTGTTTTAAAGGGTCTCCTGCTCTTTTGAATTCCTTCTTGAATATTGTTCATTTGGCTTTGTTTTTTTTTTCTTTTGTCTCATTACCTACGTTGGAGCAACTTGCTTTAGAATTGTCTAGTGGTTTTGCTCGTCATTGA
Protein sequence
MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPHPDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFFSFVSLPTLEQLALELSSGFARH*
Homology
BLAST of CsaV3_7G021640 vs. NCBI nr
Match:
KGN44137.1 (hypothetical protein Csa_015624 [Cucumis sativus])
HSP 1 Score: 406.4 bits (1043), Expect = 1.5e-109
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query: 1 MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH 60
MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH
Sbjct: 1 MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH 60
Query: 61 PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLS 120
PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLS
Sbjct: 61 PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLS 120
Query: 121 AVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFF 180
AVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFF
Sbjct: 121 AVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFF 180
Query: 181 SFVSLPTLEQLALELSSGFARH 203
SFVSLPTLEQLALELSSGFARH
Sbjct: 181 SFVSLPTLEQLALELSSGFARH 202
BLAST of CsaV3_7G021640 vs. NCBI nr
Match:
XP_008458113.1 (PREDICTED: uncharacterized protein LOC103497643 [Cucumis melo])
HSP 1 Score: 91.7 bits (226), Expect = 8.0e-15
Identity = 75/203 (36.95%), Postives = 102/203 (50.25%), Query Frame = 0
Query: 14 ASSHAKQSTDTMIDNLFVEFAR----DPEVLGYCAHLHSSFADSAIE---SAPHPDFTST 73
+S +S+D ID+LF EF E Y SF+ S + +A P F +
Sbjct: 98 SSLQVPRSSDEPIDDLFDEFQHVSIPHGEESSYAPPTVDSFSGSTLSQTTAAQEPPFFTP 157
Query: 74 SIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFS--------L 133
+ P V D T + P+++ + H + V +N + R +
Sbjct: 158 ASSHPTDVPDVTTHA---PSSVPIDEISFHS----KDCVHKWNFVVKLRIADEAVISNQH 217
Query: 134 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALF 193
S+V +F+PK IREFIVNLP DLNDHG+ + KVHVRG CF+ SP L+N FL H
Sbjct: 218 RSSVGHFYPKFIREFIVNLPADLNDHGSPEYQKVHVRGKCFEISPTLINRFLK--HSLPT 277
Query: 194 FFSFVSLPTLEQLALELSSGFAR 202
+S V+LP EQL LELSSG R
Sbjct: 278 DYS-VTLPLPEQLTLELSSGSVR 290
BLAST of CsaV3_7G021640 vs. NCBI nr
Match:
KAA0052179.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 84.3 bits (207), Expect = 1.3e-12
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 0
Query: 119 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALF 178
++ V F+PK IREFIVNLP L+D+G+ + KVHVRG CF+ SPAL+N FL H L
Sbjct: 5 ITVVRPFYPKFIREFIVNLPAKLDDYGSPKYQKVHVRGKCFEISPALINKFLQ--HSLLV 64
Query: 179 FFSFVSLPTLEQLALELSSG 199
+S V+LP EQLALELS G
Sbjct: 65 DYS-VNLPLPEQLALELSRG 81
BLAST of CsaV3_7G021640 vs. NCBI nr
Match:
KAA0046750.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 84.3 bits (207), Expect = 1.3e-12
Identity = 75/199 (37.69%), Postives = 97/199 (48.74%), Query Frame = 0
Query: 20 QSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPHPDFTSTSIPGPPSVCDEYT 79
+S++ ID+LF EF P G SS A A++ P P+ T
Sbjct: 66 RSSNEPIDDLFAEFQHVPAPRGE----DSSHAPLAVD--PFPEST--------------- 125
Query: 80 ASGAKPTAIELVPS--FSHGP-----LKFQAHVSSFNLISYTRF-------SLLSAVYN- 139
P+ L+ S F H P + + ++ FNL+ + LL + N
Sbjct: 126 -----PSRQVLLKSLHFLHQPRLITLMLLELPLTFFNLVLFQSILITCLARCLLPTITNV 185
Query: 140 --FFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFFSF 199
F+ K IREFIVNL DLNDHG+ + KVHVRG CF+ SPALLN L H +S
Sbjct: 186 APFYSKFIREFIVNLSADLNDHGSPEYQKVHVRGKCFEISPALLNQLLR--HSLPADYS- 235
Query: 200 VSLPTLEQLALELSSGFAR 202
V+LP EQLALELSSG R
Sbjct: 246 VTLPLPEQLALELSSGSVR 235
BLAST of CsaV3_7G021640 vs. NCBI nr
Match:
KAA0062234.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])
HSP 1 Score: 81.6 bits (200), Expect = 8.3e-12
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 119 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALF 178
++ V F+PK IREFIVNLP L+D+G+ + KVHVRG CF+ SPAL+N FL H
Sbjct: 5 ITVVRPFYPKFIREFIVNLPAKLDDYGSPKYQKVHVRGKCFEISPALINKFLQ--HSLPV 64
Query: 179 FFSFVSLPTLEQLALELSSG 199
+S V+LP EQLALELS G
Sbjct: 65 DYS-VNLPLPEQLALELSRG 81
BLAST of CsaV3_7G021640 vs. ExPASy TrEMBL
Match:
A0A0A0K752 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G201890 PE=4 SV=1)
HSP 1 Score: 406.4 bits (1043), Expect = 7.1e-110
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0
Query: 1 MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH 60
MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH
Sbjct: 1 MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH 60
Query: 61 PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLS 120
PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLS
Sbjct: 61 PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLS 120
Query: 121 AVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFF 180
AVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFF
Sbjct: 121 AVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFF 180
Query: 181 SFVSLPTLEQLALELSSGFARH 203
SFVSLPTLEQLALELSSGFARH
Sbjct: 181 SFVSLPTLEQLALELSSGFARH 202
BLAST of CsaV3_7G021640 vs. ExPASy TrEMBL
Match:
A0A1S3C780 (uncharacterized protein LOC103497643 OS=Cucumis melo OX=3656 GN=LOC103497643 PE=4 SV=1)
HSP 1 Score: 91.7 bits (226), Expect = 3.9e-15
Identity = 75/203 (36.95%), Postives = 102/203 (50.25%), Query Frame = 0
Query: 14 ASSHAKQSTDTMIDNLFVEFAR----DPEVLGYCAHLHSSFADSAIE---SAPHPDFTST 73
+S +S+D ID+LF EF E Y SF+ S + +A P F +
Sbjct: 98 SSLQVPRSSDEPIDDLFDEFQHVSIPHGEESSYAPPTVDSFSGSTLSQTTAAQEPPFFTP 157
Query: 74 SIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFS--------L 133
+ P V D T + P+++ + H + V +N + R +
Sbjct: 158 ASSHPTDVPDVTTHA---PSSVPIDEISFHS----KDCVHKWNFVVKLRIADEAVISNQH 217
Query: 134 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALF 193
S+V +F+PK IREFIVNLP DLNDHG+ + KVHVRG CF+ SP L+N FL H
Sbjct: 218 RSSVGHFYPKFIREFIVNLPADLNDHGSPEYQKVHVRGKCFEISPTLINRFLK--HSLPT 277
Query: 194 FFSFVSLPTLEQLALELSSGFAR 202
+S V+LP EQL LELSSG R
Sbjct: 278 DYS-VTLPLPEQLTLELSSGSVR 290
BLAST of CsaV3_7G021640 vs. ExPASy TrEMBL
Match:
A0A5A7TUD8 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00330 PE=4 SV=1)
HSP 1 Score: 84.3 bits (207), Expect = 6.2e-13
Identity = 75/199 (37.69%), Postives = 97/199 (48.74%), Query Frame = 0
Query: 20 QSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPHPDFTSTSIPGPPSVCDEYT 79
+S++ ID+LF EF P G SS A A++ P P+ T
Sbjct: 66 RSSNEPIDDLFAEFQHVPAPRGE----DSSHAPLAVD--PFPEST--------------- 125
Query: 80 ASGAKPTAIELVPS--FSHGP-----LKFQAHVSSFNLISYTRF-------SLLSAVYN- 139
P+ L+ S F H P + + ++ FNL+ + LL + N
Sbjct: 126 -----PSRQVLLKSLHFLHQPRLITLMLLELPLTFFNLVLFQSILITCLARCLLPTITNV 185
Query: 140 --FFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFFSF 199
F+ K IREFIVNL DLNDHG+ + KVHVRG CF+ SPALLN L H +S
Sbjct: 186 APFYSKFIREFIVNLSADLNDHGSPEYQKVHVRGKCFEISPALLNQLLR--HSLPADYS- 235
Query: 200 VSLPTLEQLALELSSGFAR 202
V+LP EQLALELSSG R
Sbjct: 246 VTLPLPEQLALELSSGSVR 235
BLAST of CsaV3_7G021640 vs. ExPASy TrEMBL
Match:
A0A5A7UFC9 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1855G00010 PE=4 SV=1)
HSP 1 Score: 84.3 bits (207), Expect = 6.2e-13
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 0
Query: 119 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALF 178
++ V F+PK IREFIVNLP L+D+G+ + KVHVRG CF+ SPAL+N FL H L
Sbjct: 5 ITVVRPFYPKFIREFIVNLPAKLDDYGSPKYQKVHVRGKCFEISPALINKFLQ--HSLLV 64
Query: 179 FFSFVSLPTLEQLALELSSG 199
+S V+LP EQLALELS G
Sbjct: 65 DYS-VNLPLPEQLALELSRG 81
BLAST of CsaV3_7G021640 vs. ExPASy TrEMBL
Match:
A0A5A7V4K8 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00380 PE=4 SV=1)
HSP 1 Score: 81.6 bits (200), Expect = 4.0e-12
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 0
Query: 119 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALF 178
++ V F+PK IREFIVNLP L+D+G+ + KVHVRG CF+ SPAL+N FL H
Sbjct: 5 ITVVRPFYPKFIREFIVNLPAKLDDYGSPKYQKVHVRGKCFEISPALINKFLQ--HSLPV 64
Query: 179 FFSFVSLPTLEQLALELSSG 199
+S V+LP EQLALELS G
Sbjct: 65 DYS-VNLPLPEQLALELSRG 81
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KGN44137.1 | 1.5e-109 | 100.00 | hypothetical protein Csa_015624 [Cucumis sativus] | [more] |
XP_008458113.1 | 8.0e-15 | 36.95 | PREDICTED: uncharacterized protein LOC103497643 [Cucumis melo] | [more] |
KAA0052179.1 | 1.3e-12 | 57.50 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
KAA0046750.1 | 1.3e-12 | 37.69 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
KAA0062234.1 | 8.3e-12 | 56.25 | flocculation protein FLO11-like [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0K752 | 7.1e-110 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G201890 PE=4 SV=1 | [more] |
A0A1S3C780 | 3.9e-15 | 36.95 | uncharacterized protein LOC103497643 OS=Cucumis melo OX=3656 GN=LOC103497643 PE=... | [more] |
A0A5A7TUD8 | 6.2e-13 | 37.69 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5A7UFC9 | 6.2e-13 | 57.50 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
A0A5A7V4K8 | 4.0e-12 | 56.25 | Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... | [more] |
Match Name | E-value | Identity | Description | |