CsaV3_7G021640 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G021640
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionFlocculation protein FLO11-like
Locationchr7: 10316437 .. 10317230 (+)
RNA-Seq ExpressionCsaV3_7G021640
SyntenyCsaV3_7G021640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCCAAACGTCCTGTCACTACCACTTTTGCTCTTGCCTCATCCCATGCCAAGCAATCTACTGATACCATGATTGATAACCTGTTTGTCGAATTTGCTCGGGATCCTGAGGTTCTAGGCTATTGTGCTCACCTGCACTCATCTTTTGCTGACAGTGCTATTGAGTCGGCTCCACATCCTGATTTCACATCTACCTCTATACCCGGTCCTCCATCGGTATGTGATGAGTACACCGCTTCAGGAGCTAAGCCTACTGCTATTGAGTTAGTTCCTAGTTTTTCCCATGGTCCTCTGAAGTTTCAGGCCCATGTTTCCTCTTGTGGGCAAGAAGTTGTTACCACAAAGTCTAGCTGAAGCAAGCTTCCTCAAAATGTACCTGCCGTTCCTATTGATGTATATCATTTGATTCTGAAGATTGTGTCCATAAGTGGAAGTAAGTTGTACAACGTTGTATTGCTGACGAGTCCGAAATTTCCGATCAACATCGTTCCTGTTTTGTTGTAGTTAATTTGATCTCGTATACAAGGTTCTCTCTACTGTCTGCTGTTTATAACTTCTTTCCTAAACTTATTCGTGAGTTTATTGTAAACCTCCCTACTGATCTCAATGATCATGGAACGTGTGGCTTTCATAAAGTTCATGTTCGTGGAAACTGTTTTAAAGGGTCTCCTGCTCTTTTGAATTCCTTCTTGAATATTGTTCATTTGGCTTTGTTTTTTTTTTCTTTTGTCTCATTACCTACGTTGGAGCAACTTGCTTTAGAATTGTCTAGTGGTTTTGCTCGTCATTGA

mRNA sequence

ATGCAATCCAAACGTCCTGTCACTACCACTTTTGCTCTTGCCTCATCCCATGCCAAGCAATCTACTGATACCATGATTGATAACCTGTTTGTCGAATTTGCTCGGGATCCTGAGGTTCTAGGCTATTGTGCTCACCTGCACTCATCTTTTGCTGACAGTGCTATTGAGTCGGCTCCACATCCTGATTTCACATCTACCTCTATACCCGGTCCTCCATCGGTATGTGATGAGTACACCGCTTCAGGAGCTAAGCCTACTGCTATTGAGTTAGTTCCTAGTTTTTCCCATGGTCCTCTGAAGTTTCAGGCCCATGTTTCCTCTTTTAATTTGATCTCGTATACAAGGTTCTCTCTACTGTCTGCTGTTTATAACTTCTTTCCTAAACTTATTCGTGAGTTTATTGTAAACCTCCCTACTGATCTCAATGATCATGGAACGTGTGGCTTTCATAAAGTTCATGTTCGTGGAAACTGTTTTAAAGGGTCTCCTGCTCTTTTGAATTCCTTCTTGAATATTGTTCATTTGGCTTTGTTTTTTTTTTCTTTTGTCTCATTACCTACGTTGGAGCAACTTGCTTTAGAATTGTCTAGTGGTTTTGCTCGTCATTGA

Coding sequence (CDS)

ATGCAATCCAAACGTCCTGTCACTACCACTTTTGCTCTTGCCTCATCCCATGCCAAGCAATCTACTGATACCATGATTGATAACCTGTTTGTCGAATTTGCTCGGGATCCTGAGGTTCTAGGCTATTGTGCTCACCTGCACTCATCTTTTGCTGACAGTGCTATTGAGTCGGCTCCACATCCTGATTTCACATCTACCTCTATACCCGGTCCTCCATCGGTATGTGATGAGTACACCGCTTCAGGAGCTAAGCCTACTGCTATTGAGTTAGTTCCTAGTTTTTCCCATGGTCCTCTGAAGTTTCAGGCCCATGTTTCCTCTTTTAATTTGATCTCGTATACAAGGTTCTCTCTACTGTCTGCTGTTTATAACTTCTTTCCTAAACTTATTCGTGAGTTTATTGTAAACCTCCCTACTGATCTCAATGATCATGGAACGTGTGGCTTTCATAAAGTTCATGTTCGTGGAAACTGTTTTAAAGGGTCTCCTGCTCTTTTGAATTCCTTCTTGAATATTGTTCATTTGGCTTTGTTTTTTTTTTCTTTTGTCTCATTACCTACGTTGGAGCAACTTGCTTTAGAATTGTCTAGTGGTTTTGCTCGTCATTGA

Protein sequence

MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPHPDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFFSFVSLPTLEQLALELSSGFARH*
Homology
BLAST of CsaV3_7G021640 vs. NCBI nr
Match: KGN44137.1 (hypothetical protein Csa_015624 [Cucumis sativus])

HSP 1 Score: 406.4 bits (1043), Expect = 1.5e-109
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0

Query: 1   MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH 60
           MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH
Sbjct: 1   MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH 60

Query: 61  PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLS 120
           PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLS
Sbjct: 61  PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLS 120

Query: 121 AVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFF 180
           AVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFF
Sbjct: 121 AVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFF 180

Query: 181 SFVSLPTLEQLALELSSGFARH 203
           SFVSLPTLEQLALELSSGFARH
Sbjct: 181 SFVSLPTLEQLALELSSGFARH 202

BLAST of CsaV3_7G021640 vs. NCBI nr
Match: XP_008458113.1 (PREDICTED: uncharacterized protein LOC103497643 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 8.0e-15
Identity = 75/203 (36.95%), Postives = 102/203 (50.25%), Query Frame = 0

Query: 14  ASSHAKQSTDTMIDNLFVEFAR----DPEVLGYCAHLHSSFADSAIE---SAPHPDFTST 73
           +S    +S+D  ID+LF EF        E   Y      SF+ S +    +A  P F + 
Sbjct: 98  SSLQVPRSSDEPIDDLFDEFQHVSIPHGEESSYAPPTVDSFSGSTLSQTTAAQEPPFFTP 157

Query: 74  SIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFS--------L 133
           +   P  V D  T +   P+++ +     H     +  V  +N +   R +         
Sbjct: 158 ASSHPTDVPDVTTHA---PSSVPIDEISFHS----KDCVHKWNFVVKLRIADEAVISNQH 217

Query: 134 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALF 193
            S+V +F+PK IREFIVNLP DLNDHG+  + KVHVRG CF+ SP L+N FL   H    
Sbjct: 218 RSSVGHFYPKFIREFIVNLPADLNDHGSPEYQKVHVRGKCFEISPTLINRFLK--HSLPT 277

Query: 194 FFSFVSLPTLEQLALELSSGFAR 202
            +S V+LP  EQL LELSSG  R
Sbjct: 278 DYS-VTLPLPEQLTLELSSGSVR 290

BLAST of CsaV3_7G021640 vs. NCBI nr
Match: KAA0052179.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-12
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 119 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALF 178
           ++ V  F+PK IREFIVNLP  L+D+G+  + KVHVRG CF+ SPAL+N FL   H  L 
Sbjct: 5   ITVVRPFYPKFIREFIVNLPAKLDDYGSPKYQKVHVRGKCFEISPALINKFLQ--HSLLV 64

Query: 179 FFSFVSLPTLEQLALELSSG 199
            +S V+LP  EQLALELS G
Sbjct: 65  DYS-VNLPLPEQLALELSRG 81

BLAST of CsaV3_7G021640 vs. NCBI nr
Match: KAA0046750.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-12
Identity = 75/199 (37.69%), Postives = 97/199 (48.74%), Query Frame = 0

Query: 20  QSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPHPDFTSTSIPGPPSVCDEYT 79
           +S++  ID+LF EF   P   G      SS A  A++  P P+ T               
Sbjct: 66  RSSNEPIDDLFAEFQHVPAPRGE----DSSHAPLAVD--PFPEST--------------- 125

Query: 80  ASGAKPTAIELVPS--FSHGP-----LKFQAHVSSFNLISYTRF-------SLLSAVYN- 139
                P+   L+ S  F H P     +  +  ++ FNL+ +           LL  + N 
Sbjct: 126 -----PSRQVLLKSLHFLHQPRLITLMLLELPLTFFNLVLFQSILITCLARCLLPTITNV 185

Query: 140 --FFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFFSF 199
             F+ K IREFIVNL  DLNDHG+  + KVHVRG CF+ SPALLN  L   H     +S 
Sbjct: 186 APFYSKFIREFIVNLSADLNDHGSPEYQKVHVRGKCFEISPALLNQLLR--HSLPADYS- 235

Query: 200 VSLPTLEQLALELSSGFAR 202
           V+LP  EQLALELSSG  R
Sbjct: 246 VTLPLPEQLALELSSGSVR 235

BLAST of CsaV3_7G021640 vs. NCBI nr
Match: KAA0062234.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 8.3e-12
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 0

Query: 119 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALF 178
           ++ V  F+PK IREFIVNLP  L+D+G+  + KVHVRG CF+ SPAL+N FL   H    
Sbjct: 5   ITVVRPFYPKFIREFIVNLPAKLDDYGSPKYQKVHVRGKCFEISPALINKFLQ--HSLPV 64

Query: 179 FFSFVSLPTLEQLALELSSG 199
            +S V+LP  EQLALELS G
Sbjct: 65  DYS-VNLPLPEQLALELSRG 81

BLAST of CsaV3_7G021640 vs. ExPASy TrEMBL
Match: A0A0A0K752 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G201890 PE=4 SV=1)

HSP 1 Score: 406.4 bits (1043), Expect = 7.1e-110
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0

Query: 1   MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH 60
           MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH
Sbjct: 1   MQSKRPVTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPH 60

Query: 61  PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLS 120
           PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLS
Sbjct: 61  PDFTSTSIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFSLLS 120

Query: 121 AVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFF 180
           AVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFF
Sbjct: 121 AVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFF 180

Query: 181 SFVSLPTLEQLALELSSGFARH 203
           SFVSLPTLEQLALELSSGFARH
Sbjct: 181 SFVSLPTLEQLALELSSGFARH 202

BLAST of CsaV3_7G021640 vs. ExPASy TrEMBL
Match: A0A1S3C780 (uncharacterized protein LOC103497643 OS=Cucumis melo OX=3656 GN=LOC103497643 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.9e-15
Identity = 75/203 (36.95%), Postives = 102/203 (50.25%), Query Frame = 0

Query: 14  ASSHAKQSTDTMIDNLFVEFAR----DPEVLGYCAHLHSSFADSAIE---SAPHPDFTST 73
           +S    +S+D  ID+LF EF        E   Y      SF+ S +    +A  P F + 
Sbjct: 98  SSLQVPRSSDEPIDDLFDEFQHVSIPHGEESSYAPPTVDSFSGSTLSQTTAAQEPPFFTP 157

Query: 74  SIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHVSSFNLISYTRFS--------L 133
           +   P  V D  T +   P+++ +     H     +  V  +N +   R +         
Sbjct: 158 ASSHPTDVPDVTTHA---PSSVPIDEISFHS----KDCVHKWNFVVKLRIADEAVISNQH 217

Query: 134 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALF 193
            S+V +F+PK IREFIVNLP DLNDHG+  + KVHVRG CF+ SP L+N FL   H    
Sbjct: 218 RSSVGHFYPKFIREFIVNLPADLNDHGSPEYQKVHVRGKCFEISPTLINRFLK--HSLPT 277

Query: 194 FFSFVSLPTLEQLALELSSGFAR 202
            +S V+LP  EQL LELSSG  R
Sbjct: 278 DYS-VTLPLPEQLTLELSSGSVR 290

BLAST of CsaV3_7G021640 vs. ExPASy TrEMBL
Match: A0A5A7TUD8 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00330 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.2e-13
Identity = 75/199 (37.69%), Postives = 97/199 (48.74%), Query Frame = 0

Query: 20  QSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPHPDFTSTSIPGPPSVCDEYT 79
           +S++  ID+LF EF   P   G      SS A  A++  P P+ T               
Sbjct: 66  RSSNEPIDDLFAEFQHVPAPRGE----DSSHAPLAVD--PFPEST--------------- 125

Query: 80  ASGAKPTAIELVPS--FSHGP-----LKFQAHVSSFNLISYTRF-------SLLSAVYN- 139
                P+   L+ S  F H P     +  +  ++ FNL+ +           LL  + N 
Sbjct: 126 -----PSRQVLLKSLHFLHQPRLITLMLLELPLTFFNLVLFQSILITCLARCLLPTITNV 185

Query: 140 --FFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALFFFSF 199
             F+ K IREFIVNL  DLNDHG+  + KVHVRG CF+ SPALLN  L   H     +S 
Sbjct: 186 APFYSKFIREFIVNLSADLNDHGSPEYQKVHVRGKCFEISPALLNQLLR--HSLPADYS- 235

Query: 200 VSLPTLEQLALELSSGFAR 202
           V+LP  EQLALELSSG  R
Sbjct: 246 VTLPLPEQLALELSSGSVR 235

BLAST of CsaV3_7G021640 vs. ExPASy TrEMBL
Match: A0A5A7UFC9 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1855G00010 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 6.2e-13
Identity = 46/80 (57.50%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 119 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALF 178
           ++ V  F+PK IREFIVNLP  L+D+G+  + KVHVRG CF+ SPAL+N FL   H  L 
Sbjct: 5   ITVVRPFYPKFIREFIVNLPAKLDDYGSPKYQKVHVRGKCFEISPALINKFLQ--HSLLV 64

Query: 179 FFSFVSLPTLEQLALELSSG 199
            +S V+LP  EQLALELS G
Sbjct: 65  DYS-VNLPLPEQLALELSRG 81

BLAST of CsaV3_7G021640 vs. ExPASy TrEMBL
Match: A0A5A7V4K8 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold321G00380 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.0e-12
Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 0

Query: 119 LSAVYNFFPKLIREFIVNLPTDLNDHGTCGFHKVHVRGNCFKGSPALLNSFLNIVHLALF 178
           ++ V  F+PK IREFIVNLP  L+D+G+  + KVHVRG CF+ SPAL+N FL   H    
Sbjct: 5   ITVVRPFYPKFIREFIVNLPAKLDDYGSPKYQKVHVRGKCFEISPALINKFLQ--HSLPV 64

Query: 179 FFSFVSLPTLEQLALELSSG 199
            +S V+LP  EQLALELS G
Sbjct: 65  DYS-VNLPLPEQLALELSRG 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN44137.11.5e-109100.00hypothetical protein Csa_015624 [Cucumis sativus][more]
XP_008458113.18.0e-1536.95PREDICTED: uncharacterized protein LOC103497643 [Cucumis melo][more]
KAA0052179.11.3e-1257.50flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
KAA0046750.11.3e-1237.69flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
KAA0062234.18.3e-1256.25flocculation protein FLO11-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7527.1e-110100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G201890 PE=4 SV=1[more]
A0A1S3C7803.9e-1536.95uncharacterized protein LOC103497643 OS=Cucumis melo OX=3656 GN=LOC103497643 PE=... [more]
A0A5A7TUD86.2e-1337.69Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7UFC96.2e-1357.50Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7V4K84.0e-1256.25Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G021640.1CsaV3_7G021640.1mRNA