CsaV3_7G021210 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G021210
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 9670997 .. 9671205 (+)
RNA-Seq Expression	CsaV3_7G021210
Synteny	CsaV3_7G021210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGACTCCGAGTCCGAAATGGAGAGAGTAAAACAGAATGTGAAGGATTAATACAGATTGAAGAGAGAACACCGTTGAAGCCTGAAGGAGTCGACGAGTTGCCTGCAGAGGAGTTTCAAATGGCGATTGAGTTTGCATACACCCGAAAGGAAGAAGACGATGTGGAAAGTAAAATAAAAATTGGAGGCTCTAAGAATGAGAACTAG

mRNA sequence

ATGAGGGACTCCGAGTCCGAAATGGAGAGAATTGAAGAGAGAACACCGTTGAAGCCTGAAGGAGTCGACGAGTTGCCTGCAGAGGAGTTTCAAATGGCGATTGAGTTTGCATACACCCGAAAGGAAGAAGACGATGTGGAAAGTAAAATAAAAATTGGAGGCTCTAAGAATGAGAACTAG

Coding sequence (CDS)

ATGAGGGACTCCGAGTCCGAAATGGAGAGAATTGAAGAGAGAACACCGTTGAAGCCTGAAGGAGTCGACGAGTTGCCTGCAGAGGAGTTTCAAATGGCGATTGAGTTTGCATACACCCGAAAGGAAGAAGACGATGTGGAAAGTAAAATAAAAATTGGAGGCTCTAAGAATGAGAACTAG

Protein sequence

MRDSESEMERIEERTPLKPEGVDELPAEEFQMAIEFAYTRKEEDDVESKIKIGGSKNEN*

Homology

[Close]

BLAST of CsaV3_7G021210 vs. NCBI nr
Match: KGN44090.1 (hypothetical protein Csa_016859 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 2.6e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MRDSESEMERIEERTPLKPEGVDELPAEEFQMAIEFAYTRKEEDDVESKIKIGGSKNEN 60
          MRDSESEMERIEERTPLKPEGVDELPAEEFQMAIEFAYTRKEEDDVESKIKIGGSKNEN
Sbjct: 1  MRDSESEMERIEERTPLKPEGVDELPAEEFQMAIEFAYTRKEEDDVESKIKIGGSKNEN 59

[Close]

BLAST of CsaV3_7G021210 vs. ExPASy TrEMBL
Match: A0A0A0K354 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G181650 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0


Query: 1  MRDSESEMERIEERTPLKPEGVDELPAEEFQMAIEFAYTRKEEDDVESKIKIGGSKNEN 60
          MRDSESEMERIEERTPLKPEGVDELPAEEFQMAIEFAYTRKEEDDVESKIKIGGSKNEN
Sbjct: 1  MRDSESEMERIEERTPLKPEGVDELPAEEFQMAIEFAYTRKEEDDVESKIKIGGSKNEN 59

The following BLAST results are available for this feature:

BLAST of CsaV3_7G021210 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44090.1	2.6e-22	100.00	hypothetical protein Csa_016859 [Cucumis sativus]	[more]

BLAST of CsaV3_7G021210 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G021210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K354	1.3e-22	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G181650 PE=4 SV=1	[more]

BLAST of CsaV3_7G021210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G021210.1	CsaV3_7G021210.1	mRNA