CsaV3_7G021080 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G021080
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	chr7: 9460133 .. 9460874 (+)
RNA-Seq Expression	CsaV3_7G021080
Synteny	CsaV3_7G021080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACGGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGCTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGGTATTTGAGAGGGATGATTCATTTTGGGCTCACTTATACGAAAGGTCCCAGAGAATTCAATATATTCGATTACTCTACTTAAACGAAAGTATAATATCCTACTTAAACGAAAGCTTGGTTTCATGGAATTCGCAAAAGCAAAAGACGGTGGCACTCTCATCTTGCAAAGCCGAGTTCATTGCAGCCACTACCGCAGCTTGCCAAGCATTGTAGTTAAGATGCCTTGTTAGCGAGATAGTTGGAATGAAGCCAAGGCTAGTAACATTATTTGTGGACAACAAATCCGCGATAGCTCACATGAAGAATACCGTATTTCATGGTCGCAACAAGCACATAGATACATGTTTTCATTTCATTCGAGAGTGTGTCGAGAATGGACAAATTATCGTTGAATTTGTCAACACTGGAGAACAACAAGCCGATGTTCTGACTAAAGCATTGACGGAAGTAAAGTTAGCTGCTATGCGTCAACTACTTGGTGTTCGTAACTTAGAATCATGTCAGAATTAGGGGGGTAG

mRNA sequence

ATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACGGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGCTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGAATCATGTCAGAATTAGGGGGGTAG

Coding sequence (CDS)

ATGGCTGATTGCAATGCCACAAAGTACCCGATGGAACCCAAGGCACAACTTCACAAAGACACGGAAGGAGCACCAATTGATGCTACGGAGTACAGAAGCATCGTTGGTTGTCTTAGATACTTACTGAACACAAGGCCAGATCTTTCATATGCTGTTGGGATGGCGAGTAGGTATATGGAAAGGCCTACAACCATGCATTACAAGGTGGTCAAGCAAATACTTAGAATCATGTCAGAATTAGGGGGGTAG

Protein sequence

MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYMERPTTMHYKVVKQILRIMSELGG*

Homology

[Close]

BLAST of CsaV3_7G021080 vs. NCBI nr
Match: KAE8646020.1 (hypothetical protein Csa_015698 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 8.6e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60
          MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME
Sbjct: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60

Query: 61 RPTTMHYKVVKQILRIMSELGG 83
          RPTTMHYKVVKQILRIMSELGG
Sbjct: 61 RPTTMHYKVVKQILRIMSELGG 82

[Close]

BLAST of CsaV3_7G021080 vs. NCBI nr
Match: XP_031742485.1 (secreted RxLR effector protein 161-like [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60
           MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME
Sbjct: 44  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 103

Query: 61  RPTTMHYKVVKQILRIM 78
           RPTTMHYKVVKQILR +
Sbjct: 104 RPTTMHYKVVKQILRYL 120

[Close]

BLAST of CsaV3_7G021080 vs. NCBI nr
Match: XP_031742070.1 (secreted RxLR effector protein 161-like [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60
           MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME
Sbjct: 39  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 98

Query: 61  RPTTMHYKVVKQILRIM 78
           RPTTMHYKVVKQILR +
Sbjct: 99  RPTTMHYKVVKQILRYL 115

[Close]

BLAST of CsaV3_7G021080 vs. NCBI nr
Match: KAE8648201.1 (hypothetical protein Csa_018467, partial [Cucumis sativus])

HSP 1 Score: 157.9 bits (398), Expect = 3.7e-35
Identity = 74/77 (96.10%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60
          MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSY VGMASRYME
Sbjct: 3  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYVVGMASRYME 62

Query: 61 RPTTMHYKVVKQILRIM 78
          RPTTMHYKVVKQILR +
Sbjct: 63 RPTTMHYKVVKQILRYL 79

[Close]

BLAST of CsaV3_7G021080 vs. NCBI nr
Match: KAE8652919.1 (hypothetical protein Csa_004527, partial [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 4.9e-35
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60
          MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME
Sbjct: 1  MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60

Query: 61 RPTTMHYKVVKQIL 75
          RPTTMHYKVVKQIL
Sbjct: 61 RPTTMHYKVVKQIL 74

[Close]

BLAST of CsaV3_7G021080 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-11
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 6    ATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYMERPTTM 65
            AT     PK  LH  T+  P D TEYR IVG L+YL  TRPDLSYAV   S+YM  PT  
Sbjct: 1205 ATPMATSPKLTLHSGTK-LP-DPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDD 1264

Query: 66   HYKVVKQILRIMS 79
            H+  +K++LR ++
Sbjct: 1265 HWNALKRVLRYLA 1275

[Close]

BLAST of CsaV3_7G021080 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-10
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 0


Query: 10   PMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYMERPTTMHYKV 69
            PM P  +L   +     D TEYR IVG L+YL  TRPD+SYAV   S++M  PT  H + 
Sbjct: 1224 PMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQA 1283

Query: 70   VKQILRIMS 79
            +K+ILR ++
Sbjct: 1284 LKRILRYLA 1292

[Close]

BLAST of CsaV3_7G021080 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.8e-08
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60
           M DC     P+  K      T   P D +++RSIVG L+YL  TRPD+SYAV +  + M 
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMH 130

Query: 61  RPTTMHYKVVKQILR 76
            PT   + ++K++LR
Sbjct: 131 EPTLADFDLLKRVLR 144

[Close]

BLAST of CsaV3_7G021080 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 50.4 bits (119), Expect = 1.1e-05
Identity = 26/72 (36.11%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 7   TKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNT-RPDLSYAVGMASRYMERPTTM 66
           T+ P+     L + T     D T Y+SIVG L +  NT RPD+SY V + SR++  P  +
Sbjct: 159 TQTPLCNSKPLFETTSPHLKDITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAI 218

Query: 67  HYKVVKQILRIM 78
           H +  +++LR +
Sbjct: 219 HLESARRVLRYL 230

[Close]

BLAST of CsaV3_7G021080 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.2e-05
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 31   YRSIVGCLRY-LLNTRPDLSYAVGMASRYMERPTTMHYKVVKQILRIM 78
            Y S VG L Y ++ TRPD+++AVG+ SR++E P   H++ VK ILR +
Sbjct: 1111 YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYL 1158

[Close]

BLAST of CsaV3_7G021080 vs. ExPASy TrEMBL
Match: A0A5K0VEQ6 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS1129 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-25
Identity = 55/77 (71.43%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60
           M DCN TK PMEP++QL+KD EG P+DATEYR  +GCLRYL++TRPDL YAVG+ASR+ME
Sbjct: 202 MFDCNPTKIPMEPRSQLNKDPEGQPVDATEYRRFIGCLRYLVHTRPDLLYAVGVASRFME 261

Query: 61  RPTTMHYKVVKQILRIM 78
           RPT MH+K VKQILR +
Sbjct: 262 RPTVMHHKAVKQILRYL 278

[Close]

BLAST of CsaV3_7G021080 vs. ExPASy TrEMBL
Match: A0A0A9FJ50 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.7e-25
Identity = 56/77 (72.73%), Postives = 68/77 (88.31%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60
           M D N TKYPME KAQ+HKD++G P+DATEYR +VGCLRYLL+TRPDLS+AVG+ASR+ME
Sbjct: 81  MEDYNPTKYPMEHKAQVHKDSDGQPVDATEYRRVVGCLRYLLHTRPDLSHAVGVASRHME 140

Query: 61  RPTTMHYKVVKQILRIM 78
           RPT MH K+VKQ+LR +
Sbjct: 141 RPTVMHQKLVKQMLRYL 157

[Close]

BLAST of CsaV3_7G021080 vs. ExPASy TrEMBL
Match: Q0J8A6 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.9e-25
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++GCLRYLL+TRPDLSYAVG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQILRIM 78
            RPTTMH K VK ILR +
Sbjct: 1233 RPTTMHLKAVKMILRYL 1249

[Close]

BLAST of CsaV3_7G021080 vs. ExPASy TrEMBL
Match: B8BDZ6 (Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.9e-25
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++GCLRYLL+TRPDLSYAVG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQILRIM 78
            RPTTMH K VK ILR +
Sbjct: 1233 RPTTMHLKAVKMILRYL 1249

[Close]

BLAST of CsaV3_7G021080 vs. ExPASy TrEMBL
Match: A0A0P0XB91 (Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.9e-25
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 0


Query: 1    MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60
            M  CN T  PMEP++ LHKD +G PIDATEYR ++GCLRYLL+TRPDLSYAVG+ASR+ME
Sbjct: 1173 MQGCNPTSIPMEPRSLLHKDADGNPIDATEYRRVIGCLRYLLHTRPDLSYAVGVASRFME 1232

Query: 61   RPTTMHYKVVKQILRIM 78
            RPTTMH K VK ILR +
Sbjct: 1233 RPTTMHLKAVKMILRYL 1249

[Close]

BLAST of CsaV3_7G021080 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.3e-09
Identity = 30/75 (40.00%), Postives = 43/75 (57.33%), Query Frame = 0


Query: 1   MADCNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYME 60
           M DC     P+  K      T   P D +++RSIVG L+YL  TRPD+SYAV +  + M 
Sbjct: 71  MLDCKPMSTPLPLKLNSSVSTAKYP-DPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMH 130

Query: 61  RPTTMHYKVVKQILR 76
            PT   + ++K++LR
Sbjct: 131 EPTLADFDLLKRVLR 144

[Close]

BLAST of CsaV3_7G021080 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-08
Identity = 26/71 (36.62%), Postives = 38/71 (53.52%), Query Frame = 0


Query: 4   CNATKYPMEPKAQLHKDTEGAPIDATEYRSIVGCLRYLLNTRPDLSYAVGMASRYMERPT 63
           C  +  PM+P       + G  +DA  YR ++G L YL  TR D+S+AV   S++ E P 
Sbjct: 351 CKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPR 410

Query: 64  TMHYKVVKQIL 75
             H + V +IL
Sbjct: 411 LAHQQAVMKIL 421

The following BLAST results are available for this feature:

BLAST of CsaV3_7G021080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646020.1	8.6e-40	100.00	hypothetical protein Csa_015698 [Cucumis sativus]	[more]
XP_031742485.1	1.3e-35	97.40	secreted RxLR effector protein 161-like [Cucumis sativus]	[more]
XP_031742070.1	1.3e-35	97.40	secreted RxLR effector protein 161-like [Cucumis sativus]	[more]
KAE8648201.1	3.7e-35	96.10	hypothetical protein Csa_018467, partial [Cucumis sativus]	[more]
KAE8652919.1	4.9e-35	100.00	hypothetical protein Csa_004527, partial [Cucumis sativus]	[more]

BLAST of CsaV3_7G021080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.8e-11	50.68	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	4.3e-10	46.38	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	1.8e-08	40.00	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
P25600	1.1e-05	36.11	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]
P10978	4.2e-05	47.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CsaV3_7G021080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5K0VEQ6	1.7e-25	71.43	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Nym...	[more]
A0A0A9FJ50	1.7e-25	72.73	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Arundo donax O...	[more]
Q0J8A6	4.9e-25	71.43	Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE...	[more]
B8BDZ6	4.9e-25	71.43	Uncharacterized protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30754 PE=4...	[more]
A0A0P0XB91	4.9e-25	71.43	Os08g0125300 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0125300 PE...	[more]

BLAST of CsaV3_7G021080 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	1.3e-09	40.00	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	3.2e-08	36.62	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G021080.1	CsaV3_7G021080.1	mRNA