CsaV3_7G019880 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G019880
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionProtein ENHANCED DOWNY MILDEW 2
Locationchr7: 9121628 .. 9121942 (+)
RNA-Seq ExpressionCsaV3_7G019880
SyntenyCsaV3_7G019880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGATATTGGTTCTAGACATGTTGAGGAACGTATCTTGGATCAAATGGGAGGACGTGTTGGTCTTAATTATAAACCCTACTCTACCGGTGTTGACACGTATATGAGGGACTCTGAAATACGGTCACATATTCGTCATTACGGGCACCCAGATACTGACAATTTAAGAAGTAATTATCAAGTTGGACCTGATCCTAGGTATAGTAGGATTGGGGCAATCCCAGCTAGTTATGGGCATCTGGGTACATTTTCTGAACCATCCCGTTGGATGAACACTTCAGCAACACAACGATATATGGCCTCGACTCGATGA

mRNA sequence

ATGTATGATATTGGTTCTAGACATGTTGAGGAACGTATCTTGGATCAAATGGGAGGACGTGTTGGTCTTAATTATAAACCCTACTCTACCGGTGTTGACACGTATATGAGGGACTCTGAAATACGGTCACATATTCGTCATTACGGGCACCCAGATACTGACAATTTAAGAAGTAATTATCAAGTTGGACCTGATCCTAGGTATAGTAGGATTGGGGCAATCCCAGCTAGTTATGGGCATCTGGGTACATTTTCTGAACCATCCCGTTGGATGAACACTTCAGCAACACAACGATATATGGCCTCGACTCGATGA

Coding sequence (CDS)

ATGTATGATATTGGTTCTAGACATGTTGAGGAACGTATCTTGGATCAAATGGGAGGACGTGTTGGTCTTAATTATAAACCCTACTCTACCGGTGTTGACACGTATATGAGGGACTCTGAAATACGGTCACATATTCGTCATTACGGGCACCCAGATACTGACAATTTAAGAAGTAATTATCAAGTTGGACCTGATCCTAGGTATAGTAGGATTGGGGCAATCCCAGCTAGTTATGGGCATCTGGGTACATTTTCTGAACCATCCCGTTGGATGAACACTTCAGCAACACAACGATATATGGCCTCGACTCGATGA

Protein sequence

MYDIGSRHVEERILDQMGGRVGLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSNYQVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRYMASTR*
Homology
[Close]
BLAST of CsaV3_7G019880 vs. NCBI nr
Match: KAE8646009.1 (hypothetical protein Csa_015431 [Cucumis sativus])

HSP 1 Score: 223.0 bits (567), Expect = 1.2e-54
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0 

Query: 1   MYDIGSRHVEERILDQMGGRVGLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSNY 60
           MYDIGSRHVEERILDQMGGRVGLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSNY
Sbjct: 1   MYDIGSRHVEERILDQMGGRVGLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSNY 60

Query: 61  QVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRYMASTR 105
           QVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRYMASTR
Sbjct: 61  QVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRYMASTR 104

[Close]
BLAST of CsaV3_7G019880 vs. NCBI nr
Match: XP_031745059.1 (LOW QUALITY PROTEIN: protein ENHANCED DOWNY MILDEW 2-like [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 7.3e-52
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1    MYDIGSRHVEERILDQMGGRVGLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSNY 60
            MYDIGSRHVEERI+DQMGGRVGLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSNY
Sbjct: 1025 MYDIGSRHVEERIVDQMGGRVGLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSNY 1084

Query: 61   QVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRYM 101
            QVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRY+
Sbjct: 1085 QVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRYV 1124

[Close]
BLAST of CsaV3_7G019880 vs. NCBI nr
Match: KAE8645949.1 (hypothetical protein Csa_018221 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 7.3e-52
Identity = 98/100 (98.00%), Postives = 100/100 (100.00%), Query Frame = 0 

Query: 1   MYDIGSRHVEERILDQMGGRVGLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSNY 60
           MYDIGSRHVEERI+DQMGGRVGLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSNY
Sbjct: 641 MYDIGSRHVEERIVDQMGGRVGLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSNY 700

Query: 61  QVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRYM 101
           QVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRY+
Sbjct: 701 QVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRYV 740

[Close]
BLAST of CsaV3_7G019880 vs. NCBI nr
Match: XP_038898809.1 (protein ENHANCED DOWNY MILDEW 2 isoform X1 [Benincasa hispida] >XP_038898810.1 protein ENHANCED DOWNY MILDEW 2 isoform X1 [Benincasa hispida] >XP_038898811.1 protein ENHANCED DOWNY MILDEW 2 isoform X1 [Benincasa hispida])

HSP 1 Score: 180.3 bits (456), Expect = 8.9e-42
Identity = 84/101 (83.17%), Postives = 90/101 (89.11%), Query Frame = 0 

Query: 1    MYDIGSRHVEE-RILDQMGGRV-GLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRS 60
            +YDIGSRH+EE R +DQMGG V GLNYKPY+TGV TYMRDSEIR HIRHYGHPDTDNLRS
Sbjct: 1150 IYDIGSRHIEEQRNVDQMGGHVDGLNYKPYATGVGTYMRDSEIRPHIRHYGHPDTDNLRS 1209

Query: 61   NYQVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRY 100
            NYQ GPDPRYSRIGA P++YGHL TF EPS WMNTSATQRY
Sbjct: 1210 NYQTGPDPRYSRIGAFPSTYGHLSTFPEPSHWMNTSATQRY 1250

[Close]
BLAST of CsaV3_7G019880 vs. NCBI nr
Match: XP_038898812.1 (protein ENHANCED DOWNY MILDEW 2 isoform X2 [Benincasa hispida])

HSP 1 Score: 180.3 bits (456), Expect = 8.9e-42
Identity = 84/101 (83.17%), Postives = 90/101 (89.11%), Query Frame = 0 

Query: 1    MYDIGSRHVEE-RILDQMGGRV-GLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRS 60
            +YDIGSRH+EE R +DQMGG V GLNYKPY+TGV TYMRDSEIR HIRHYGHPDTDNLRS
Sbjct: 1146 IYDIGSRHIEEQRNVDQMGGHVDGLNYKPYATGVGTYMRDSEIRPHIRHYGHPDTDNLRS 1205

Query: 61   NYQVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRY 100
            NYQ GPDPRYSRIGA P++YGHL TF EPS WMNTSATQRY
Sbjct: 1206 NYQTGPDPRYSRIGAFPSTYGHLSTFPEPSHWMNTSATQRY 1246

[Close]
BLAST of CsaV3_7G019880 vs. ExPASy TrEMBL
Match: A0A5A7U1N2 (Protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G00430 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-40
Identity = 81/100 (81.00%), Postives = 87/100 (87.00%), Query Frame = 0 

Query: 1    MYDIGSRHVEERILDQMGGRV-GLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSN 60
            +Y IG RHV+ERI +QMGG V GLNYKPYS GVDTYMRDSEIRSHI  YGHPDTDNLRSN
Sbjct: 1161 IYGIGPRHVDERIANQMGGHVDGLNYKPYSAGVDTYMRDSEIRSHIHLYGHPDTDNLRSN 1220

Query: 61   YQVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRY 100
            YQ GPDPRY+R+ AIP+SYG LGTF EPS WMNTSATQRY
Sbjct: 1221 YQAGPDPRYNRVAAIPSSYGRLGTFPEPSHWMNTSATQRY 1260

[Close]
BLAST of CsaV3_7G019880 vs. ExPASy TrEMBL
Match: A0A5D3CCR5 (Protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002750 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-40
Identity = 81/100 (81.00%), Postives = 87/100 (87.00%), Query Frame = 0 

Query: 1   MYDIGSRHVEERILDQMGGRV-GLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSN 60
           +Y IG RHV+ERI +QMGG V GLNYKPYS GVDTYMRDSEIRSHI  YGHPDTDNLRSN
Sbjct: 861 IYGIGPRHVDERIANQMGGHVDGLNYKPYSAGVDTYMRDSEIRSHIHLYGHPDTDNLRSN 920

Query: 61  YQVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRY 100
           YQ GPDPRY+R+ AIP+SYG LGTF EPS WMNTSATQRY
Sbjct: 921 YQAGPDPRYNRVAAIPSSYGRLGTFPEPSHWMNTSATQRY 960

[Close]
BLAST of CsaV3_7G019880 vs. ExPASy TrEMBL
Match: A0A1S3BHF3 (LOW QUALITY PROTEIN: protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo OX=3656 GN=LOC103490112 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.4e-40
Identity = 81/100 (81.00%), Postives = 87/100 (87.00%), Query Frame = 0 

Query: 1    MYDIGSRHVEERILDQMGGRV-GLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSN 60
            +Y IG RHV+ERI +QMGG V GLNYKPYS GVDTYMRDSEIRSHI  YGHPDTDNLRSN
Sbjct: 1180 IYGIGPRHVDERIANQMGGHVDGLNYKPYSAGVDTYMRDSEIRSHIHLYGHPDTDNLRSN 1239

Query: 61   YQVGPDPRYSRIGAIPASYGHLGTFSEPSRWMNTSATQRY 100
            YQ GPDPRY+R+ AIP+SYG LGTF EPS WMNTSATQRY
Sbjct: 1240 YQAGPDPRYNRVAAIPSSYGRLGTFPEPSHWMNTSATQRY 1279

[Close]
BLAST of CsaV3_7G019880 vs. ExPASy TrEMBL
Match: A0A6J1ITQ9 (protein ENHANCED DOWNY MILDEW 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111480505 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.4e-31
Identity = 69/100 (69.00%), Postives = 80/100 (80.00%), Query Frame = 0 

Query: 3    DIGSRHVEERILDQMGGRV-GLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSNYQ 62
            +IGSRH E+RI+DQMG    GLNY PY+TG + Y RD EIRS +R YG+ DTDNLRSNYQ
Sbjct: 1213 EIGSRHFEDRIIDQMGRHADGLNYAPYTTGHNAYTRDLEIRSQLRRYGNMDTDNLRSNYQ 1272

Query: 63   VGPDPRY-SRIGAIPASYGHLGTFSEPSRWMNTSATQRYM 101
             GP+P Y +RIG+ P +YGHLGT SEPS WMNTSATQRYM
Sbjct: 1273 AGPEPGYINRIGSFPPTYGHLGTPSEPSHWMNTSATQRYM 1312

[Close]
BLAST of CsaV3_7G019880 vs. ExPASy TrEMBL
Match: A0A6J1IWB7 (protein ENHANCED DOWNY MILDEW 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111480505 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.4e-31
Identity = 69/100 (69.00%), Postives = 80/100 (80.00%), Query Frame = 0 

Query: 3    DIGSRHVEERILDQMGGRV-GLNYKPYSTGVDTYMRDSEIRSHIRHYGHPDTDNLRSNYQ 62
            +IGSRH E+RI+DQMG    GLNY PY+TG + Y RD EIRS +R YG+ DTDNLRSNYQ
Sbjct: 973  EIGSRHFEDRIIDQMGRHADGLNYAPYTTGHNAYTRDLEIRSQLRRYGNMDTDNLRSNYQ 1032

Query: 63   VGPDPRY-SRIGAIPASYGHLGTFSEPSRWMNTSATQRYM 101
             GP+P Y +RIG+ P +YGHLGT SEPS WMNTSATQRYM
Sbjct: 1033 AGPEPGYINRIGSFPPTYGHLGTPSEPSHWMNTSATQRYM 1072

The following BLAST results are available for this feature:
BLAST of CsaV3_7G019880 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646009.11.2e-54100.00hypothetical protein Csa_015431 [Cucumis sativus][more]
XP_031745059.17.3e-5298.00LOW QUALITY PROTEIN: protein ENHANCED DOWNY MILDEW 2-like [Cucumis sativus][more]
KAE8645949.17.3e-5298.00hypothetical protein Csa_018221 [Cucumis sativus][more]
XP_038898809.18.9e-4283.17protein ENHANCED DOWNY MILDEW 2 isoform X1 [Benincasa hispida] >XP_038898810.1 p... [more]
XP_038898812.18.9e-4283.17protein ENHANCED DOWNY MILDEW 2 isoform X2 [Benincasa hispida][more]
BLAST of CsaV3_7G019880 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G019880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U1N21.4e-4081.00Protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3CCR51.4e-4081.00Protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S3BHF31.4e-4081.00LOW QUALITY PROTEIN: protein ENHANCED DOWNY MILDEW 2 OS=Cucumis melo OX=3656 GN=... [more]
A0A6J1ITQ93.4e-3169.00protein ENHANCED DOWNY MILDEW 2 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1IWB73.4e-3169.00protein ENHANCED DOWNY MILDEW 2 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
BLAST of CsaV3_7G019880 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G019880.1CsaV3_7G019880.1mRNA