CsaV3_7G018680 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G018680
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 8608459 .. 8608719 (+)
RNA-Seq ExpressionCsaV3_7G018680
SyntenyCsaV3_7G018680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAACTCCAAGTCAGATCAATTTCTATCCAAAGGTTTTCAAGATACAGAAGCCAAACACTAAAGGACTAAAGATGAGTGAATTGCAAAAGGTTTCAGTCAAACTGAAAAACACAAAGTCCAACAAAGCAATCCAATTTTTCAACACAGGAAAAAGAAAACCCGAAATCCAAGGAAGTGTAAGCAGTGAAAGCAAGCAAAAAAGGGAAACACATCACAAAAGTCCCCGATCGAGTCCACAGAATTCAAGAAGAAGATGA

mRNA sequence

ATGGAAACTCCAAGTCAGATCAATTTCTATCCAAAGGTTTTCAAGATACAGAAGCCAAACACTAAAGGACTAAAGATGAGTGAATTGCAAAAGGTTTCAGTCAAACTGAAAAACACAAAGTCCAACAAAGCAATCCAATTTTTCAACACAGGAAAAAGAAAACCCGAAATCCAAGGAAGTGTAAGCAGTGAAAGCAAGCAAAAAAGGGAAACACATCACAAAAGTCCCCGATCGAGTCCACAGAATTCAAGAAGAAGATGA

Coding sequence (CDS)

ATGGAAACTCCAAGTCAGATCAATTTCTATCCAAAGGTTTTCAAGATACAGAAGCCAAACACTAAAGGACTAAAGATGAGTGAATTGCAAAAGGTTTCAGTCAAACTGAAAAACACAAAGTCCAACAAAGCAATCCAATTTTTCAACACAGGAAAAAGAAAACCCGAAATCCAAGGAAGTGTAAGCAGTGAAAGCAAGCAAAAAAGGGAAACACATCACAAAAGTCCCCGATCGAGTCCACAGAATTCAAGAAGAAGATGA

Protein sequence

METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGSVSSESKQKRETHHKSPRSSPQNSRRR*
Homology
BLAST of CsaV3_7G018680 vs. NCBI nr
Match: KAE8645992.1 (hypothetical protein Csa_015471 [Cucumis sativus])

HSP 1 Score: 162.2 bits (409), Expect = 2.1e-36
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGS 60
          METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGS
Sbjct: 1  METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGS 60

Query: 61 VSSESKQKRETHHKSPRSSPQNSRRR 87
          VSSESKQKRETHHKSPRSSPQNSRRR
Sbjct: 61 VSSESKQKRETHHKSPRSSPQNSRRR 86

BLAST of CsaV3_7G018680 vs. ExPASy TrEMBL
Match: A0A0A0LDY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G765080 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.0e-36
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0

Query: 1  METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGS 60
          METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGS
Sbjct: 1  METPSQINFYPKVFKIQKPNTKGLKMSELQKVSVKLKNTKSNKAIQFFNTGKRKPEIQGS 60

Query: 61 VSSESKQKRETHHKSPRSSPQNSRRR 87
          VSSESKQKRETHHKSPRSSPQNSRRR
Sbjct: 61 VSSESKQKRETHHKSPRSSPQNSRRR 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8645992.12.1e-36100.00hypothetical protein Csa_015471 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LDY01.0e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G765080 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..86
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G018680.1CsaV3_7G018680.1mRNA