CsaV3_7G018600 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G018600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 8507738 .. 8508155 (-)
RNA-Seq Expression	CsaV3_7G018600
Synteny	CsaV3_7G018600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGCAATCAAATTGCTATATGCAGTGAAAAGCTTTTCTTCTAATTTTACTAAATTACTCCTAGCTACCAAATGCCTCAAACACCAATGAACCCAACCTCAGACCTATAGTAATAAAGCTGACAATTTAACACAATACAAAAATTGGAAGCAATCCTGTCATCAATCTATAATGTGGGGTGTGCAAAAACGGTGAAGTTTTTTGCTCTACAACATGCATATTTTTCAATCAAACGAAGCCAACAAAGAGAGAATGAAGCCACGAAACACGAATGGCAGAGAAAAGAAACTGGGTTTTGTTGGGTACCTCCGAAATGTCAGCTGGAAGCTGAAACAGAGACTGGCGATGGCTTTCAATCGATTGGAAGAAGGCCTCGCTTTCGAGAGAGACGGAGGTGCGTTTCAGGGCCTCCGCAAG

mRNA sequence

ATGCATATTTTTCAATCAAACGAAGCCAACAAAGAGAGAATGAAGCCACGAAACACGAATGGCAGAGAAAAGAAACTGGGTTTTGTTGGGTACCTCCGAAATGTCAGCTGGAAGCTGAAACAGAGACTGGCGATGGCTTTCAATCGATTGGAAGAAGGCCTCGCTTTCGAGAGAGACGGAGGTGCGTTTCAGGGCCTCCGCAAG

Coding sequence (CDS)

ATGCATATTTTTCAATCAAACGAAGCCAACAAAGAGAGAATGAAGCCACGAAACACGAATGGCAGAGAAAAGAAACTGGGTTTTGTTGGGTACCTCCGAAATGTCAGCTGGAAGCTGAAACAGAGACTGGCGATGGCTTTCAATCGATTGGAAGAAGGCCTCGCTTTCGAGAGAGACGGAGGTGCGTTTCAGGGCCTCCGCAAG

Protein sequence

MHIFQSNEANKERMKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK

Homology

[Close]

BLAST of CsaV3_7G018600 vs. NCBI nr
Match: KAE8645985.1 (hypothetical protein Csa_015487, partial [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 8.6e-30
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MHIFQSNEANKERMKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDG 60
          MHIFQSNEANKERMKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDG
Sbjct: 1  MHIFQSNEANKERMKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDG 60

Query: 61 GAFQGLRK 69
          GAFQGLRK
Sbjct: 61 GAFQGLRK 68

[Close]

BLAST of CsaV3_7G018600 vs. NCBI nr
Match: KAA0048726.1 (hypothetical protein E6C27_scaffold43G00200 [Cucumis melo var. makuwa] >TYK07900.1 hypothetical protein E5676_scaffold265G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 14 MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK 69
          M  R TNGREKK GFVGYLRNVSWKLKQRLAMAFNRL+EGLAFERDGGA QGLRK
Sbjct: 1  MNLRITNGREKKQGFVGYLRNVSWKLKQRLAMAFNRLKEGLAFERDGGALQGLRK 55

[Close]

BLAST of CsaV3_7G018600 vs. ExPASy TrEMBL
Match: A0A0A0LEI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769630 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.5e-22
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 14 MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK 69
          MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK
Sbjct: 1  MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK 55

[Close]

BLAST of CsaV3_7G018600 vs. ExPASy TrEMBL
Match: A0A5A7U3B5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00100 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = 0


Query: 14 MKPRNTNGREKKLGFVGYLRNVSWKLKQRLAMAFNRLEEGLAFERDGGAFQGLRK 69
          M  R TNGREKK GFVGYLRNVSWKLKQRLAMAFNRL+EGLAFERDGGA QGLRK
Sbjct: 1  MNLRITNGREKKQGFVGYLRNVSWKLKQRLAMAFNRLKEGLAFERDGGALQGLRK 55

The following BLAST results are available for this feature:

BLAST of CsaV3_7G018600 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645985.1	8.6e-30	100.00	hypothetical protein Csa_015487, partial [Cucumis sativus]	[more]
KAA0048726.1	2.2e-17	89.09	hypothetical protein E6C27_scaffold43G00200 [Cucumis melo var. makuwa] >TYK07900...	[more]

BLAST of CsaV3_7G018600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G018600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEI0	2.5e-22	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769630 PE=4 SV=1	[more]
A0A5A7U3B5	1.1e-17	89.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_7G018600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G018600.1	CsaV3_7G018600.1	mRNA