CsaV3_7G018330 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G018330
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 8199304 .. 8199607 (+)
RNA-Seq ExpressionCsaV3_7G018330
SyntenyCsaV3_7G018330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCGAAAAGCTACTGCGATGCCGCACATGAAGTCGGCAACAACGTCGGTAAAAGTTCGTCAGGGATACTTTTCGGGACGCCGCTCGCTGCCACGTCGCAAAATATTTCCCCCGTGCACGATCTCAATACGTCGCGGACGACTTTTGCAGCACCGACGTCATGGAACGCTTCGACGATGCAGACGTCAAGGAAGGCTTCAACGGCACAAACGTCGCGGTAGGATTATGCGATGTCGGCGTCGCAGTAGGCTTCTGCGGCGCAAACGTTGCAGAAAGCTTTTACGACGCGGGCGTCGTATAA

mRNA sequence

ATGTCGCGAAAAGCTACTGCGATGCCGCACATGAAGTCGGCAACAACGTCGGTAAAAGTTCGTCAGGGATACTTTTCGGGACGCCGCTCGCTGCCACGTCGCAAAATATTTCCCCCCACCGACGTCATGGAACGCTTCGACGATGCAGACGTCAAGGAAGGCTTCAACGGCACAAACGTCGCGGTAGGATTATGCGATGTCGGCGTCGCAGTAGGCTTCTGCGGCGCAAACGTTGCAGAAAGCTTTTACGACGCGGGCGTCGTATAA

Coding sequence (CDS)

ATGTCGCGAAAAGCTACTGCGATGCCGCACATGAAGTCGGCAACAACGTCGGTAAAAGTTCGTCAGGGATACTTTTCGGGACGCCGCTCGCTGCCACGTCGCAAAATATTTCCCCCCACCGACGTCATGGAACGCTTCGACGATGCAGACGTCAAGGAAGGCTTCAACGGCACAAACGTCGCGGTAGGATTATGCGATGTCGGCGTCGCAGTAGGCTTCTGCGGCGCAAACGTTGCAGAAAGCTTTTACGACGCGGGCGTCGTATAA

Protein sequence

MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNVAVGLCDVGVAVGFCGANVAESFYDAGVV*
Homology
[Close]
BLAST of CsaV3_7G018330 vs. NCBI nr
Match: KGN44069.1 (hypothetical protein Csa_015453 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 2.2e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNV 60
          MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNV
Sbjct: 1  MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNV 60

Query: 61 AVGLCDVGVAVGFCGANVAESFYDAGVV 89
          AVGLCDVGVAVGFCGANVAESFYDAGVV
Sbjct: 61 AVGLCDVGVAVGFCGANVAESFYDAGVV 88

[Close]
BLAST of CsaV3_7G018330 vs. NCBI nr
Match: KGN54791.1 (hypothetical protein Csa_012757 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 3.9e-06
Identity = 33/64 (51.56%), Postives = 37/64 (57.81%), Query Frame = 0 

Query: 24 YFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNVAVGLCDVGVAVGFCGANVAESFY 83
          YF   RS      F   DV +   DADV EGF G ++  GLCD  V V FC  +VAESFY
Sbjct: 25 YFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGADIMEGLCDADVTVDFCDVDVAESFY 84

Query: 84 DAGV 88
          DAGV
Sbjct: 85 DAGV 88

[Close]
BLAST of CsaV3_7G018330 vs. ExPASy TrEMBL
Match: A0A0A0K568 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G162530 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 

Query: 1  MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNV 60
          MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNV
Sbjct: 1  MSRKATAMPHMKSATTSVKVRQGYFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNV 60

Query: 61 AVGLCDVGVAVGFCGANVAESFYDAGVV 89
          AVGLCDVGVAVGFCGANVAESFYDAGVV
Sbjct: 61 AVGLCDVGVAVGFCGANVAESFYDAGVV 88

[Close]
BLAST of CsaV3_7G018330 vs. ExPASy TrEMBL
Match: A0A0A0L3S9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499290 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.9e-06
Identity = 33/64 (51.56%), Postives = 37/64 (57.81%), Query Frame = 0 

Query: 24 YFSGRRSLPRRKIFPPTDVMERFDDADVKEGFNGTNVAVGLCDVGVAVGFCGANVAESFY 83
          YF   RS      F   DV +   DADV EGF G ++  GLCD  V V FC  +VAESFY
Sbjct: 25 YFLRARSQYVEDSFCGADVAKGSCDADVAEGFGGADIMEGLCDADVTVDFCDVDVAESFY 84

Query: 84 DAGV 88
          DAGV
Sbjct: 85 DAGV 88

The following BLAST results are available for this feature:
BLAST of CsaV3_7G018330 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44069.12.2e-41100.00hypothetical protein Csa_015453 [Cucumis sativus][more]
KGN54791.13.9e-0651.56hypothetical protein Csa_012757 [Cucumis sativus][more]
BLAST of CsaV3_7G018330 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G018330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K5681.1e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G162530 PE=4 SV=1[more]
A0A0A0L3S91.9e-0651.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499290 PE=4 SV=1[more]
BLAST of CsaV3_7G018330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G018330.1CsaV3_7G018330.1mRNA