CsaV3_7G016160 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G016160
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 7936938 .. 7937126 (-)
RNA-Seq ExpressionCsaV3_7G016160
SyntenyCsaV3_7G016160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGCATTAGGTGATCGAGAACGTCGATTGCACACTAAATCTAAAGAAATTAGGATTTCGGAATCGGAAAGCGAACGTACACCAAAATTAATCGAGGGACGGAATTTGGCGCGATTGATGGAGACGGTAAATTTTCCGGAGCGATTACGATCACAGCCAGAGAAGAAATGGAGAGAAAATGCATGA

mRNA sequence

ATGAAGGCATTAGGTGATCGAGAACGTCGATTGCACACTAAATCTAAAGAAATTAGGATTTCGGAATCGGAAAGCGAACGTACACCAAAATTAATCGAGGGACGGAATTTGGCGCGATTGATGGAGACGGTAAATTTTCCGGAGCGATTACGATCACAGCCAGAGAAGAAATGGAGAGAAAATGCATGA

Coding sequence (CDS)

ATGAAGGCATTAGGTGATCGAGAACGTCGATTGCACACTAAATCTAAAGAAATTAGGATTTCGGAATCGGAAAGCGAACGTACACCAAAATTAATCGAGGGACGGAATTTGGCGCGATTGATGGAGACGGTAAATTTTCCGGAGCGATTACGATCACAGCCAGAGAAGAAATGGAGAGAAAATGCATGA

Protein sequence

MKALGDRERRLHTKSKEIRISESESERTPKLIEGRNLARLMETVNFPERLRSQPEKKWRENA*
Homology
[Close]
BLAST of CsaV3_7G016160 vs. NCBI nr
Match: KAE8645954.1 (hypothetical protein Csa_018217 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 2.9e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MKALGDRERRLHTKSKEIRISESESERTPKLIEGRNLARLMETVNFPERLRSQPEKKWRE 60
          MKALGDRERRLHTKSKEIRISESESERTPKLIEGRNLARLMETVNFPERLRSQPEKKWRE
Sbjct: 1  MKALGDRERRLHTKSKEIRISESESERTPKLIEGRNLARLMETVNFPERLRSQPEKKWRE 60

Query: 61 NA 63
          NA
Sbjct: 61 NA 62

[Close]
BLAST of CsaV3_7G016160 vs. ExPASy TrEMBL
Match: A0A0A0KRD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615185 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.4e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MKALGDRERRLHTKSKEIRISESESERTPKLIEGRNLARLMETVNFPERLRSQPEKKWRE 60
          MKALGDRERRLHTKSKEIRISESESERTPKLIEGRNLARLMETVNFPERLRSQPEKKWRE
Sbjct: 1  MKALGDRERRLHTKSKEIRISESESERTPKLIEGRNLARLMETVNFPERLRSQPEKKWRE 60

Query: 61 NA 63
          NA
Sbjct: 61 NA 62

The following BLAST results are available for this feature:
BLAST of CsaV3_7G016160 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8645954.12.9e-24100.00hypothetical protein Csa_018217 [Cucumis sativus][more]
BLAST of CsaV3_7G016160 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G016160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRD61.4e-24100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615185 PE=4 SV=1[more]
BLAST of CsaV3_7G016160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G016160.1CsaV3_7G016160.1mRNA