CsaV3_7G016150 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G016150
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionR3H domain-containing protein 2-like
Locationchr7: 7934002 .. 7934643 (+)
RNA-Seq ExpressionCsaV3_7G016150
SyntenyCsaV3_7G016150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGGAGCAGGCATGAAGAACTGAGGTGGGCAAAGAAGAAGGATCTATATTTTCTGGGATTTGATATGCTTCTCCCCACCATCAGTTTCATTGGAGCTTCTTACATCTCTTATGGTTGATGAAGAAGCTCGATGGTTTGAAGTTTGTGTTAGTAGACTGAGCTGTTCAGGTTGCTCTTGATACTGATAATGACGAAAAGTTAAATTGAAGAATCTGCAACCTGCTCCTGCAAGATCTTGGACGAAGGTATGGGATATTTTAATGATTTTACATGAACTTGATAAAAACGTGATAAAATGAGATGTTAATAAGTAAGTTATTTTTGAACAAAGTAAATATAGTTTTAAGCATTAACATCGTGCTATCATAATGATAAAATGAGAACATTGTTTTGTGTCATCTAACTCCTATGGTACCCTTAATTGTTTGCAACTATTTTCTTCTTTTTTTTTTTGCACTTGGAAACACTTATTTAAACGCCAAGAAAAAACTCAATCCAAATACGCCCTTAATATCTTTTTTGGATTATCCTTCAGTTTGGCTTCTTGTCTTCCATGAAGTTTTGTTCCAGTTCTCAGTTTATTTTGTTTCATTTTCAGCGTATGGAAGGATATGGTTTTTCGTCACTGCAAAACTAG

mRNA sequence

ATGGCAGGGAGCAGGCATGAAGAACTGAGGTGGGCAAAGAAGAAGGATCTATATTTTCTGGGATTTGATATGCTTCTCCCCACCATCAGTTTCATTGGAGCTTCTTACATCTCTTATGTTAAATTGAAGAATCTGCAACCTGCTCCTGCAAGATCTTGGACGAAGCGTATGGAAGGATATGGTTTTTCGTCACTGCAAAACTAG

Coding sequence (CDS)

ATGGCAGGGAGCAGGCATGAAGAACTGAGGTGGGCAAAGAAGAAGGATCTATATTTTCTGGGATTTGATATGCTTCTCCCCACCATCAGTTTCATTGGAGCTTCTTACATCTCTTATGTTAAATTGAAGAATCTGCAACCTGCTCCTGCAAGATCTTGGACGAAGCGTATGGAAGGATATGGTTTTTCGTCACTGCAAAACTAG

Protein sequence

MAGSRHEELRWAKKKDLYFLGFDMLLPTISFIGASYISYVKLKNLQPAPARSWTKRMEGYGFSSLQN*
Homology
[Close]
BLAST of CsaV3_7G016150 vs. NCBI nr
Match: KAE8645953.1 (hypothetical protein Csa_018218 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 1.0e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MAGSRHEELRWAKKKDLYFLGFDMLLPTISFIGASYISYVKLKNLQPAPARSWTKRMEGY 60
          MAGSRHEELRWAKKKDLYFLGFDMLLPTISFIGASYISYVKLKNLQPAPARSWTKRMEGY
Sbjct: 1  MAGSRHEELRWAKKKDLYFLGFDMLLPTISFIGASYISYVKLKNLQPAPARSWTKRMEGY 60

Query: 61 GFSSLQN 68
          GFSSLQN
Sbjct: 61 GFSSLQN 67

[Close]
BLAST of CsaV3_7G016150 vs. NCBI nr
Match: KAA0034658.1 (R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H domain-containing protein 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 1.5e-10
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 1   MAGSRHEELRWAKKKDLYFLGFDMLLPTISFIGASYISY 40
           +A  RHEELRWAKKKDLYFLGFD LLPTISFIGASYISY
Sbjct: 467 LARPRHEELRWAKKKDLYFLGFDTLLPTISFIGASYISY 505

[Close]
BLAST of CsaV3_7G016150 vs. ExPASy TrEMBL
Match: A0A0A0KTF4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615182 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 4.9e-31
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0 

Query: 1  MAGSRHEELRWAKKKDLYFLGFDMLLPTISFIGASYISYVKLKNLQPAPARSWTKRMEGY 60
          MAGSRHEELRWAKKKDLYFLGFDMLLPTISFIGASYISYVKLKNLQPAPARSWTKRMEGY
Sbjct: 1  MAGSRHEELRWAKKKDLYFLGFDMLLPTISFIGASYISYVKLKNLQPAPARSWTKRMEGY 60

Query: 61 GFSSLQN 68
          GFSSLQN
Sbjct: 61 GFSSLQN 67

[Close]
BLAST of CsaV3_7G016150 vs. ExPASy TrEMBL
Match: A0A5D3CFX4 (R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002020 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 7.4e-11
Identity = 35/39 (89.74%), Postives = 36/39 (92.31%), Query Frame = 0 

Query: 1   MAGSRHEELRWAKKKDLYFLGFDMLLPTISFIGASYISY 40
           +A  RHEELRWAKKKDLYFLGFD LLPTISFIGASYISY
Sbjct: 467 LARPRHEELRWAKKKDLYFLGFDTLLPTISFIGASYISY 505

The following BLAST results are available for this feature:
BLAST of CsaV3_7G016150 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8645953.11.0e-30100.00hypothetical protein Csa_018218 [Cucumis sativus][more]
KAA0034658.11.5e-1089.74R3H domain-containing protein 2-like [Cucumis melo var. makuwa] >TYK09209.1 R3H ... [more]
BLAST of CsaV3_7G016150 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G016150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KTF44.9e-31100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G615182 PE=4 SV=1[more]
A0A5D3CFX47.4e-1189.74R3H domain-containing protein 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
BLAST of CsaV3_7G016150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G016150.1CsaV3_7G016150.1mRNA