CsaV3_7G011600 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G011600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 6432670 .. 6433137 (+)
RNA-Seq Expression	CsaV3_7G011600
Synteny	CsaV3_7G011600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATAATGTTCACAGTTTCTTGCGTTATTAAATGCAATTTCACATTTTAGAAACTCCAGCCCGAGGAGGGTCGAAGGAAACCCAGGAACTGAGGAGATGTGCAATGGGGCGTGGTGCAGAGAAGAAAGATTGGAATCATGCAGTGGCGGATTTGGAGGGCTGGAAACACAATACAACGAGTAAGGAGAGAACGAAAGTGACGAGAGAAAGGAAAGGGGAGAAGGAAAAGAGTTGAAAGGAAGGCGTACGACAGTGCTCTAATCGACCAAATTAAGCAATTTTTTTTACTTAACAACGGGTGATTTTGATAATCAAGGTATTTTTTAAAAATAAATTGAGAAAAATGGGTGAACTTGAACCTATTTAGGTAGATGGGTGATTTTTTGCTTTTATTCGAGTGATTTTTTGTTTTTATTTTTTAATTTCGCATGAAAATATAGCAAATCAAATGTTTTATTGATTATTAT

mRNA sequence

ATGCAATTTCACATTTTAGAAACTCCAGCCCGAGGAGGGTCGAAGGAAACCCAGGAACTGAGGAGATGTGCAATGGGGCGTGGTGCAGAGAAGAAAGATTGGAATCATGCAGTGGCGGATTTGGAGGGCTGGAAACACAATACAACGAGTAAGGAGAGAACGAAAGTGACGAGAGAAAGGAAAGGGGAGAAGGAAAAGAGTTGA

Coding sequence (CDS)

ATGCAATTTCACATTTTAGAAACTCCAGCCCGAGGAGGGTCGAAGGAAACCCAGGAACTGAGGAGATGTGCAATGGGGCGTGGTGCAGAGAAGAAAGATTGGAATCATGCAGTGGCGGATTTGGAGGGCTGGAAACACAATACAACGAGTAAGGAGAGAACGAAAGTGACGAGAGAAAGGAAAGGGGAGAAGGAAAAGAGTTGA

Protein sequence

MQFHILETPARGGSKETQELRRCAMGRGAEKKDWNHAVADLEGWKHNTTSKERTKVTRERKGEKEKS*

Homology

[Close]

BLAST of CsaV3_7G011600 vs. NCBI nr
Match: KGN44049.1 (hypothetical protein Csa_011884 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 4.3e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MQFHILETPARGGSKETQELRRCAMGRGAEKKDWNHAVADLEGWKHNTTSKERTKVTRER 60
          MQFHILETPARGGSKETQELRRCAMGRGAEKKDWNHAVADLEGWKHNTTSKERTKVTRER
Sbjct: 1  MQFHILETPARGGSKETQELRRCAMGRGAEKKDWNHAVADLEGWKHNTTSKERTKVTRER 60

Query: 61 KGEKEKS 68
          KGEKEKS
Sbjct: 61 KGEKEKS 67

[Close]

BLAST of CsaV3_7G011600 vs. ExPASy TrEMBL
Match: A0A0A0K553 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G135940 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 1  MQFHILETPARGGSKETQELRRCAMGRGAEKKDWNHAVADLEGWKHNTTSKERTKVTRER 60
          MQFHILETPARGGSKETQELRRCAMGRGAEKKDWNHAVADLEGWKHNTTSKERTKVTRER
Sbjct: 1  MQFHILETPARGGSKETQELRRCAMGRGAEKKDWNHAVADLEGWKHNTTSKERTKVTRER 60

Query: 61 KGEKEKS 68
          KGEKEKS
Sbjct: 61 KGEKEKS 67

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44049.1	4.3e-29	100.00	hypothetical protein Csa_011884 [Cucumis sativus]	[more]

BLAST of CsaV3_7G011600 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K553	2.1e-29	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G135940 PE=4 SV=1	[more]

BLAST of CsaV3_7G011600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011600.1	CsaV3_7G011600.1	mRNA