CsaV3_7G011530 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G011530
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 6364173 .. 6364558 (-)
RNA-Seq ExpressionCsaV3_7G011530
SyntenyCsaV3_7G011530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCCTAGCCAAAGTGCCCTTGACCCACCAATCAGTAACCTGGACCCTGATCACATTGAATCAAATGTACTAGTGATAACTAGTGATGAAAGGGATAGTTTAATGCATGACGCAGCCGACATAGGCAAAGTTATCTAGCGTGTCATACCACTAACTATTACTAACCACTTGATCCAGACATAACAGAGGAAGAGGTTCTTTGCCAAACAACTATAGAGGATAAAATTCTGAACGAGGAGGGAAGTGCTGAGAAACAAGAAAAGTCAGATAAAGACGAGGCTCAAAGGGAGCATGTGGAACTTGAGATCCCTGACTTGATAGACAGTGGTTTTCGCGATGTACTTCATAACGTCATCGTGGTACCTATGAATGTCGCGTTCTAG

mRNA sequence

ATGTCGCCTAGCCAAAGTGCCCTTGACCCACCAATCAGTAACCTGGACCCTGATCACATTGAATCAAATGTACTAGTGATAACTAACATAACAGAGGAAGAGGTTCTTTGCCAAACAACTATAGAGGATAAAATTCTGAACGAGGAGGGAAGTGCTGAGAAACAAGAAAAGTCAGATAAAGACGAGGCTCAAAGGGAGCATGTGGAACTTGAGATCCCTGACTTGATAGACAGTGGTTTTCGCGATGTACTTCATAACGTCATCGTGGTACCTATGAATGTCGCGTTCTAG

Coding sequence (CDS)

ATGTCGCCTAGCCAAAGTGCCCTTGACCCACCAATCAGTAACCTGGACCCTGATCACATTGAATCAAATGTACTAGTGATAACTAACATAACAGAGGAAGAGGTTCTTTGCCAAACAACTATAGAGGATAAAATTCTGAACGAGGAGGGAAGTGCTGAGAAACAAGAAAAGTCAGATAAAGACGAGGCTCAAAGGGAGCATGTGGAACTTGAGATCCCTGACTTGATAGACAGTGGTTTTCGCGATGTACTTCATAACGTCATCGTGGTACCTATGAATGTCGCGTTCTAG

Protein sequence

MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDKDEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF*
Homology
[Close]
BLAST of CsaV3_7G011530 vs. NCBI nr
Match: KGN44043.1 (hypothetical protein Csa_011868 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-42
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK 60
          MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK
Sbjct: 1  MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK 60

Query: 61 DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF 97
          DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF
Sbjct: 61 DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF 96

[Close]
BLAST of CsaV3_7G011530 vs. ExPASy TrEMBL
Match: A0A0A0K3I0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G132910 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 6.1e-43
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK 60
          MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK
Sbjct: 1  MSPSQSALDPPISNLDPDHIESNVLVITNITEEEVLCQTTIEDKILNEEGSAEKQEKSDK 60

Query: 61 DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF 97
          DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF
Sbjct: 61 DEAQREHVELEIPDLIDSGFRDVLHNVIVVPMNVAF 96

The following BLAST results are available for this feature:
BLAST of CsaV3_7G011530 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN44043.11.3e-42100.00hypothetical protein Csa_011868 [Cucumis sativus][more]
BLAST of CsaV3_7G011530 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_7G011530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3I06.1e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G132910 PE=4 SV=1[more]
BLAST of CsaV3_7G011530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G011530.1CsaV3_7G011530.1mRNA