CsaV3_7G011340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G011340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	sperm mitochondrial-associated cysteine-rich protein-like
Location	chr7: 6079251 .. 6079787 (-)
RNA-Seq Expression	CsaV3_7G011340
Synteny	CsaV3_7G011340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTCCCTCACCACATGGCATTTCTTTCTAATTTTTCTGCCTCTATAAATTCTAAATACTCCAATTTCCTTCAAACCCATCACAAAAAAAATCCTTTTTTTTTCACTTCCCCATTCAAATTCAATATGTTTCCGGCCAAACTTCTGGCTCTGGTCGTCGTTTTTAACCTCAACACCGCCGTCTCCGCCACCGACGACGCTGCCATGCCCACACCCATTTCCTGCGACAACTGCACCATTTGTCAATCCACCTGCAGCCCACCGCCGTCTGAGCCACTGCCATTGCCACTCTCGCCGCCGCCGCCTTCGCCCTATGCAGAGCCAGAGCCACTGCCGTTTCCAGTTGCTCCTGCGAACTGCCCTCCCACCATTGTCCAGTGCTGTCAGTTTCTTCCGCCGCCGCCGCCGCCACCGCAAGCGACGGCGGTGAATGGTAATGTATACACACCGATTTATAATTCTTCTTCTTCGTTTTTGAGAGTTGGGTTGGGCTCTGCTCTGGCCCCTGTTTTTGGGTTGTTGGCCATTTTCTGA

mRNA sequence

ATGTGTTTCCCTCACCACATGGCATTTCTTTCTAATTTTTCTGCCTCTATAAATTCTAAATACTCCAATTTCCTTCAAACCCATCACAAAAAAAATCCTTTTTTTTTCACTTCCCCATTCAAATTCAATATGTTTCCGGCCAAACTTCTGGCTCTGGTCGTCGTTTTTAACCTCAACACCGCCGTCTCCGCCACCGACGACGCTGCCATGCCCACACCCATTTCCTGCGACAACTGCACCATTTGTCAATCCACCTGCAGCCCACCGCCGTCTGAGCCACTGCCATTGCCACTCTCGCCGCCGCCGCCTTCGCCCTATGCAGAGCCAGAGCCACTGCCGTTTCCAGTTGCTCCTGCGAACTGCCCTCCCACCATTGTCCAGTGCTGTCAGTTTCTTCCGCCGCCGCCGCCGCCACCGCAAGCGACGGCGGTGAATGGTAATGTATACACACCGATTTATAATTCTTCTTCTTCGTTTTTGAGAGTTGGGTTGGGCTCTGCTCTGGCCCCTGTTTTTGGGTTGTTGGCCATTTTCTGA

Coding sequence (CDS)

ATGTGTTTCCCTCACCACATGGCATTTCTTTCTAATTTTTCTGCCTCTATAAATTCTAAATACTCCAATTTCCTTCAAACCCATCACAAAAAAAATCCTTTTTTTTTCACTTCCCCATTCAAATTCAATATGTTTCCGGCCAAACTTCTGGCTCTGGTCGTCGTTTTTAACCTCAACACCGCCGTCTCCGCCACCGACGACGCTGCCATGCCCACACCCATTTCCTGCGACAACTGCACCATTTGTCAATCCACCTGCAGCCCACCGCCGTCTGAGCCACTGCCATTGCCACTCTCGCCGCCGCCGCCTTCGCCCTATGCAGAGCCAGAGCCACTGCCGTTTCCAGTTGCTCCTGCGAACTGCCCTCCCACCATTGTCCAGTGCTGTCAGTTTCTTCCGCCGCCGCCGCCGCCACCGCAAGCGACGGCGGTGAATGGTAATGTATACACACCGATTTATAATTCTTCTTCTTCGTTTTTGAGAGTTGGGTTGGGCTCTGCTCTGGCCCCTGTTTTTGGGTTGTTGGCCATTTTCTGA

Protein sequence

MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF*

Homology

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BLAST of CsaV3_7G011340 vs. NCBI nr
Match: KGN44024.1 (hypothetical protein Csa_011878 [Cucumis sativus])

HSP 1 Score: 352.1 bits (902), Expect = 2.9e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNT 60
           MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNT
Sbjct: 1   MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNT 60

Query: 61  AVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPSPYAEPEPLPFPVAPAN 120
           AVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPSPYAEPEPLPFPVAPAN
Sbjct: 61  AVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPSPYAEPEPLPFPVAPAN 120

Query: 121 CPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF 179
           CPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF
Sbjct: 121 CPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF 178

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BLAST of CsaV3_7G011340 vs. NCBI nr
Match: XP_011659730.1 (leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 262.3 bits (669), Expect = 3.0e-66
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 44  MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPP 103
           MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPP
Sbjct: 1   MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPP 60

Query: 104 SPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRVG 163
           SPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRVG
Sbjct: 61  SPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRVG 120

Query: 164 LGSALAPVFGLLAIF 179
           LGSALAPVFGLLAIF
Sbjct: 121 LGSALAPVFGLLAIF 135

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BLAST of CsaV3_7G011340 vs. NCBI nr
Match: XP_008463043.1 (PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis melo])

HSP 1 Score: 231.1 bits (588), Expect = 7.5e-57
Identity = 124/137 (90.51%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 44  MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLP-LPLSPPP 103
           MFPAKLLALVVVFNLN+AVSATDDAAM TPISCDNCTICQSTC PP SEPLP LP  PPP
Sbjct: 1   MFPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPP 60

Query: 104 PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYN-SSSSFLR 163
           P+PYAEPEPLP PVAPANCPPTIVQCCQFLPPPPPPPQATA NGN+YTPIYN SSSSFLR
Sbjct: 61  PAPYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLR 120

Query: 164 VGLGSALAPVFGLLAIF 179
           VGLGSALAPVFGL+AIF
Sbjct: 121 VGLGSALAPVFGLVAIF 137

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BLAST of CsaV3_7G011340 vs. NCBI nr
Match: KAG7037325.1 (hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.9 bits (416), Expect = 6.6e-37
Identity = 91/137 (66.42%), Postives = 105/137 (76.64%), Query Frame = 0


Query: 44  MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPP-SEPLPLPLSPPP 103
           M PAK LALV+VF+L +A++A DDA+MPTP SC+NC +CQS C PPP ++PL   L PPP
Sbjct: 1   MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPL---LPPPP 60

Query: 104 PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSS-SSFLR 163
           P P AEPEPLP PV PANCPPTIVQCCQF+PPP PPP       N+YTP YN S SSFL+
Sbjct: 61  PPPIAEPEPLPVPVPPANCPPTIVQCCQFMPPPAPPPPPN--GNNIYTPFYNESCSSFLK 120

Query: 164 VGLGSALAPVFGLLAIF 179
            GL S LAPVFG+ AIF
Sbjct: 121 RGLVSVLAPVFGVAAIF 132

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BLAST of CsaV3_7G011340 vs. NCBI nr
Match: KAG6607747.1 (hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 163.3 bits (412), Expect = 1.9e-36
Identity = 90/137 (65.69%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 44  MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPP-SEPLPLPLSPPP 103
           M PAK LALV+VF+L +A++A DDA+MPTP SC+NC +CQS C PPP ++PL   L PPP
Sbjct: 1   MSPAKFLALVIVFHLKSAITAADDASMPTPTSCENCALCQSACRPPPDAQPL---LPPPP 60

Query: 104 PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSS-SSFLR 163
           P P AEPEPLP PV P NCPPTIVQCCQF+PPP PPP       N+YTP YN S SSFL+
Sbjct: 61  PPPIAEPEPLPVPVPPGNCPPTIVQCCQFMPPPAPPPPPN--GNNIYTPFYNESCSSFLK 120

Query: 164 VGLGSALAPVFGLLAIF 179
            GL S LAPVFG+ AIF
Sbjct: 121 RGLVSVLAPVFGVAAIF 132

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BLAST of CsaV3_7G011340 vs. ExPASy TrEMBL
Match: A0A0A0K536 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.4e-93
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNT 60
           MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNT
Sbjct: 1   MCFPHHMAFLSNFSASINSKYSNFLQTHHKKNPFFFTSPFKFNMFPAKLLALVVVFNLNT 60

Query: 61  AVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPSPYAEPEPLPFPVAPAN 120
           AVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPSPYAEPEPLPFPVAPAN
Sbjct: 61  AVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLSPPPPSPYAEPEPLPFPVAPAN 120

Query: 121 CPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF 179
           CPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF
Sbjct: 121 CPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYNSSSSFLRVGLGSALAPVFGLLAIF 178

[Close]

BLAST of CsaV3_7G011340 vs. ExPASy TrEMBL
Match: A0A1S3CI95 (sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=3656 GN=LOC103501284 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 3.6e-57
Identity = 124/137 (90.51%), Postives = 128/137 (93.43%), Query Frame = 0


Query: 44  MFPAKLLALVVVFNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLP-LPLSPPP 103
           MFPAKLLALVVVFNLN+AVSATDDAAM TPISCDNCTICQSTC PP SEPLP LP  PPP
Sbjct: 1   MFPAKLLALVVVFNLNSAVSATDDAAMATPISCDNCTICQSTCRPPQSEPLPLLPPPPPP 60

Query: 104 PSPYAEPEPLPFPVAPANCPPTIVQCCQFLPPPPPPPQATAVNGNVYTPIYN-SSSSFLR 163
           P+PYAEPEPLP PVAPANCPPTIVQCCQFLPPPPPPPQATA NGN+YTPIYN SSSSFLR
Sbjct: 61  PAPYAEPEPLPIPVAPANCPPTIVQCCQFLPPPPPPPQATAGNGNIYTPIYNESSSSFLR 120

Query: 164 VGLGSALAPVFGLLAIF 179
           VGLGSALAPVFGL+AIF
Sbjct: 121 VGLGSALAPVFGLVAIF 137

[Close]

BLAST of CsaV3_7G011340 vs. ExPASy TrEMBL
Match: W9QFT0 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018218 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 9.4e-05
Identity = 42/103 (40.78%), Postives = 55/103 (53.40%), Query Frame = 0


Query: 44  MFPAKLLALVVV----FNLNTAVSATDDAAMPTPISCDNCTICQSTCSPPPSEPLPLPLS 103
           M  AKL+ ++ V    F+L  A   + D A+P+P  C NCT+CQ  C  PP+   P   +
Sbjct: 1   MISAKLVFIIAVCLSAFSLCCAWENSGD-ALPSPTPCFNCTMCQYPCLSPPASGNPSYGA 60

Query: 104 PPPPSPYAEPEPLPFPVAP------ANCPPTIVQCCQFLPPPP 137
           PPPP P     P   P+ P        CPPT +QCCQ+ PPPP
Sbjct: 61  PPPPPPELPGLPADIPLPPPQQPWQGKCPPTPIQCCQYTPPPP 102

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011340 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44024.1	2.9e-93	100.00	hypothetical protein Csa_011878 [Cucumis sativus]	[more]
XP_011659730.1	3.0e-66	100.00	leucine-rich repeat extensin-like protein 3 [Cucumis sativus]	[more]
XP_008463043.1	7.5e-57	90.51	PREDICTED: sperm mitochondrial-associated cysteine-rich protein-like [Cucumis me...	[more]
KAG7037325.1	6.6e-37	66.42	hypothetical protein SDJN02_00950, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6607747.1	1.9e-36	65.69	hypothetical protein SDJN03_01089, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_7G011340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K536	1.4e-93	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G111300 PE=4 SV=1	[more]
A0A1S3CI95	3.6e-57	90.51	sperm mitochondrial-associated cysteine-rich protein-like OS=Cucumis melo OX=365...	[more]
W9QFT0	9.4e-05	40.78	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018218 PE=4 SV=1	[more]

BLAST of CsaV3_7G011340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011340.1	CsaV3_7G011340.1	mRNA