CsaV3_7G011330 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G011330
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 6070271 .. 6070543 (-)
RNA-Seq Expression	CsaV3_7G011330
Synteny	CsaV3_7G011330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATGATAGAGGGCTACAATGGTGGTAGCGGAGGACATCAGAGGCGATCTAGAACCAAAGACACGACGGAACTAAGATCTAAAACAGGGATCAACAAATCACAAGCTAATCACAAATCTGAGAGTAGGACGAGCAGTACAAACGAATCCACAATTAGAACAAGGATCAACAATGAACTGGAACTAATTTTTCAAAGACACAACGACGAAGATATGAAACATCTTGTAACGACAGAGATCTTCTCGTTAGAGAACAGCGCAACGGGAACCTAG

mRNA sequence

GAAATGATAGAGGGCTACAATGGTGGTAGCGGAGGACATCAGAGGCGATCTAGAACCAAAGACACGACGGAACTAAGATCTAAAACAGGGATCAACAAATCACAAGCTAATCACAAATCTGAGAGTAGGACGAGCAGTACAAACGAATCCACAATTAGAACAAGGATCAACAATGAACTGGAACTAATTTTTCAAAGACACAACGACGAAGATATGAAACATCTTGTAACGACAGAGATCTTCTCGTTAGAGAACAGCGCAACGGGAACCTAG

Coding sequence (CDS)

GAAATGATAGAGGGCTACAATGGTGGTAGCGGAGGACATCAGAGGCGATCTAGAACCAAAGACACGACGGAACTAAGATCTAAAACAGGGATCAACAAATCACAAGCTAATCACAAATCTGAGAGTAGGACGAGCAGTACAAACGAATCCACAATTAGAACAAGGATCAACAATGAACTGGAACTAATTTTTCAAAGACACAACGACGAAGATATGAAACATCTTGTAACGACAGAGATCTTCTCGTTAGAGAACAGCGCAACGGGAACCTAG

Protein sequence

EMIEGYNGGSGGHQRRSRTKDTTELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELELIFQRHNDEDMKHLVTTEIFSLENSATGT*

Homology

[Close]

BLAST of CsaV3_7G011330 vs. NCBI nr
Match: KAE8645899.1 (hypothetical protein Csa_011875, partial [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 3.6e-39
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  EMIEGYNGGSGGHQRRSRTKDTTELRSKTGINKSQANHKSESRTSSTNESTIRTRINNEL 60
          EMIEGYNGGSGGHQRRSRTKDTTELRSKTGINKSQANHKSESRTSSTNESTIRTRINNEL
Sbjct: 1  EMIEGYNGGSGGHQRRSRTKDTTELRSKTGINKSQANHKSESRTSSTNESTIRTRINNEL 60

Query: 61 ELIFQRHNDEDMKHLVTTEIFSLENSATGT 91
          ELIFQRHNDEDMKHLVTTEIFSLENSATGT
Sbjct: 61 ELIFQRHNDEDMKHLVTTEIFSLENSATGT 90

[Close]

BLAST of CsaV3_7G011330 vs. ExPASy TrEMBL
Match: A0A0A0K3G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G109800 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 6.6e-39
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0


Query: 2  MIEGYNGGSGGHQRRSRTKDTTELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE 61
          MIEGYNGGSGGHQRRSRTKDTTELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE
Sbjct: 1  MIEGYNGGSGGHQRRSRTKDTTELRSKTGINKSQANHKSESRTSSTNESTIRTRINNELE 60

Query: 62 LIFQRHNDEDMKHLVTTEIFSLENSATGT 91
          LIFQRHNDEDMKHLVTTEIFSLENSATGT
Sbjct: 61 LIFQRHNDEDMKHLVTTEIFSLENSATGT 89

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011330 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645899.1	3.6e-39	100.00	hypothetical protein Csa_011875, partial [Cucumis sativus]	[more]

BLAST of CsaV3_7G011330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3G8	6.6e-39	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G109800 PE=4 SV=1	[more]

BLAST of CsaV3_7G011330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011330.1	CsaV3_7G011330.1	mRNA