CsaV3_7G011260 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G011260
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr7: 5950294 .. 5950569 (+)
RNA-Seq Expression	CsaV3_7G011260
Synteny	CsaV3_7G011260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAAGCCGTCACCACCCACAGCTTCTTCTCCGTCACTATCCTCCAGTTTTGCTTCTCATCGTTTGCCCGTCTCAATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCG

mRNA sequence

ATGCCTAAGCCGTCACCACCCACAGCTTCTTCTCCGTCACTATCCTCCAGTTTTGCTTCTCATCGTTTGCCCGTCTCAATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCG

Coding sequence (CDS)

ATGCCTAAGCCGTCACCACCCACAGCTTCTTCTCCGTCACTATCCTCCAGTTTTGCTTCTCATCGTTTGCCCGTCTCAATGCCTCTTTATGTCATTCGAAGCCCAGTCGTTGTTCGTTGCACGCAAAGCCCGTCGAGGAGTATGAGCCTGTCTTCTTCCAGATCACGCGCTGGTGTTCTCTCTGTCAAGCCAGCGTTCCTCCGTCCACCACAAGCTTCCTGTCAGTCACCTAAAGACATGGCCTCCACATCGTATCGTCCGGGTCTAAATCAAGCG

Protein sequence

MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVLSVKPAFLRPPQASCQSPKDMASTSYRPGLNQA

Homology

[Close]

BLAST of CsaV3_7G011260 vs. NCBI nr
Match: KAE8645894.1 (hypothetical protein Csa_011866, partial [Cucumis sativus])

HSP 1 Score: 174.5 bits (441), Expect = 4.3e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVL 60
          MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVL
Sbjct: 1  MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVL 60

Query: 61 SVKPAFLRPPQASCQSPKDMASTSYRPGLNQA 93
          SVKPAFLRPPQASCQSPKDMASTSYRPGLNQA
Sbjct: 61 SVKPAFLRPPQASCQSPKDMASTSYRPGLNQA 92

[Close]

BLAST of CsaV3_7G011260 vs. ExPASy TrEMBL
Match: A0A0A0K6X2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G104790 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 2.1e-40
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1   MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVL 60
           MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVL
Sbjct: 14  MPKPSPPTASSPSLSSSFASHRLPVSMPLYVIRSPVVVRCTQSPSRSMSLSSSRSRAGVL 73

Query: 61  SVKPAFLRPPQASCQSPKDMASTSYRPGLNQA 93
           SVKPAFLRPPQASCQSPKDMASTSYRPGLNQA
Sbjct: 74  SVKPAFLRPPQASCQSPKDMASTSYRPGLNQA 105

The following BLAST results are available for this feature:

BLAST of CsaV3_7G011260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645894.1	4.3e-40	100.00	hypothetical protein Csa_011866, partial [Cucumis sativus]	[more]

BLAST of CsaV3_7G011260 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G011260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6X2	2.1e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G104790 PE=4 SV=1	[more]

BLAST of CsaV3_7G011260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G011260.1	CsaV3_7G011260.1	mRNA