CsaV3_7G010010 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G010010
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	transcription initiation factor IIA subunit 1
Location	chr7: 5623506 .. 5630291 (-)
RNA-Seq Expression	CsaV3_7G010010
Synteny	CsaV3_7G010010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTTCCACAAGCTCTATCTACATCAATGTCATCGAAGATGTTATCAACAAGCTTCGTGACGAGTTTGTTGATAATGGTCCTGGAGAAGATGTTCTCAAGGAGCTTCAAGGAGTAATTCTTGATCCCCAATCTTGAAATTTTTTTGTTTCTTTTGTTTCGTTTATACTATTATCTTCTCTAGTGAATTCAAATGTTTTCTTTTTTTAATCTGTTTGAAGGATTCGATTGAATTTTTTCGGTGATTACTTTCTGGGTTTGATCCGATTCTTTCTAGGGTTTTGAGGCTTTGAAGCTAATTTAAGCTGTGTGGTTGGGCTGATTGTCTTCTTTGTCGGAACTTTTTAGATGTGGGAGGCGAAGATGATGCAAGCGGGTGCTGTGACTGGTCCTATAGAGAGGTCTGCACCATCTAAGCCTACACCCGGAGGTCCGATAACTCCGGTTCACGATCTTAATGTTCCGTATGAGGGTACTGAAGAGTACGAAACTCCCACGGCTGATTTACTCTTTCCACCGGTGATTACTTCTCTGTCCCATCTACTAATTGTTTTCCGAAGTTCGTAATTAATAATTGAAGGGATTTTGGTAAATTGTAGACGCCACTACAGACTCCAATTCAAACCCTTTACCGGGAACTGCTGACAACGCGATGTATAATGTTCCTACTGGACCCAGCGACCACTCTGCATCTGGAACTGATGCTTCTCCAGCTGCCACCACTCCTGGGGGTAGCGGTAATAATAATGTTGAGGTCAGATCTGGAAGGCCAACCCCATATATGGTAATTGTTGTTTGACTTTGACGTCACTTCTAATCTTTTACATTTGTCTTATTCCCTGCCGTTTACCCACTTCATACTGTCGTGATTGCATCATTTTTTTTTTCACATTTTGTTCCTTTGATAAAGAGGGAGTGTTGGTTTTTAATTTGATTTAAAGTGGATTAGTGGCATTGATATGGTTTTTACCATAAAAATTCTGAAGTATGTTGTAGATAGTTGAACATTCCATTATCTGGGGTTTTGATAGACGTCTACATTCTTCTTTCAGCAACCACCCTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGGTGAGTCTAGTGTTGAAGTAGTGGAAAGCTTCACAACAATAATTCTGTAGTAATTTATATTGATTGTATTTTGTAGCCTACGTGGAGGGGCGTGAGGAAGCAGCAGACAGGGGAGCTGCTGGCGCTCATCCATCCCTTACACAGGTAATCTCTTTCTTAATTCATGCTTTCATCATGAAAAAATTTGTTCTTGGAGGCTTGATGCAACACCAAAACTGCAACATGAATTTCATCTGCTTCTGATTTTGAATTACTCTACTCCTCTCTGCTATGTATCTATTTGCGCAAAAACTTTGGTAACTTCATTATGATGTTTTAAATTTTGGAAACAATTCTCAGGACTTTTTCATGATGAACTCGGGAAGCGTAAGCGTGATGATTTTGCTTCCCAGTACCAAGCTAATGGGTTTATACCACAGCAAGATGGAGCTGGAGATGCTGCCAACAGTGTTTTTGAGATTGAGGTTTGGTTTTCTTACCTGTCCTTTGAGCCTTGGACTCTCTTGTCAATTTTCTTGCACATAATTTCACGTCATAGCATATAATTTTTATTATTTTGTCTCTCATTCCAAGTAAAGCAAGGGTTAAAGAGTAATTACAAAAAAGGCTTCTCCGCTGAAGCCAACTGAGAGATATTGTACCTAACAAGGGCCCAAATGTCACTATGAGACCTCTCAAGGCCTTAAAATTTTTTGTTGTTTCTCTCTCCTTGAAGGACCTACACAATAATGCACACCCTGGTTTGTTACAAAACCTTATATTCTCATGAAAGATGAGAGGGAACTCCTTGATCATCTCTCTGCAACCCTATGTCTAACCAAGCATAATCTGGAACTCTTCAAAGAAACAACTCCAAATTACATGACCTAGATCACAATTTTGATATGATCAAAATTCTCTGCCACAAGACAATGACTTTATTCGGTATTTTCATCTTCTACTACAAGACAATGACTTAATTCATGGCCACTTGAGGGTGAGGATTGACCAAACAAAGGAAATTTTTTGTAAGACATACCTTTGGATGGAGTAGAGGACTCCAAATATGAACATCCCTTCTCCCCAAGATTCAACTGAACTTCACAATCAGAGAAAGAAAGGCAATGATTCCGTTGTTGTCCTCTAGTTTTCTTCTCAGATAGAGGACGGTGGAACCCCTTGAGAGGTCAAATTTCAGTTCCATAGTCTTGTTTGACTGCAAGTTGTGGAATTAGTTATAGAATCAATAGTAAAAGTGTCATGTACACAATTGTTTTTCCTGGATGGTAGTAAAAGCGTCATGTTCCCAAGGGGTGGATGCTCATAATTGTTTTACCTGGATGATTCTCATGTACATGATATAGAAAGATGTAACAACACACGACCTTACACATGGAGCCATGCTACCTCATAACAAGCTAAGGAGTGTTCTAGTTTCCCTCAATTTAAACACATAATATTTTATGGGTTAAGTGTACATAATATGAAATTAATATTTGACATGGAAACTTCAGATATTCTTTTATTGCTATAAGAAACCGGACGATATCTCAAAATGAATCCCACAATGGAGGGGAAATTGGAGAGCGGCATTTCACATTCAAGCTCAATTATACATGCATCTCTCACTTTGTAGATTGAAAAATACCAGACTGTTTGAGAAGCTTAGTCTTTAGTTTACAGCTCATTTTGTCCAGTGCCCTCAACAATTGCCAATAAATGTGTTTATACTCATTCTCAGTGTGGGGTTCCTCTGCACAAACTTCATGCCATCGACTCATTTTCACATATCTAGCCAACAGATTGACTACCCTTTGATTACCAGCTTGCTTCTGATGCCTCACGTGTGTAATGGGAATTGGAAAGATTGGTATATGTCTATAAGAGAGAGAGATAGAAATTTTAGATCTGTAATATTCTTGACCGTAAATTCAGGTGGCTAGACTTGGCTCTGTGAGGCTACAAGATAATCTGGAATGGTAAGTTCAAAGGATGTGCATTATGGGTTGAGCTAGAAATGGTTATATGATTGATAGTAATTTACTAGTAGAACAATTAGTGTTGCCATTTGATTGGCTAGAGGTCAAGCAACTCCTCCTAGGTGTTTGTTTTAGAGAAACCTTTTTTTAAAGGCTACACTGTTGATAGTTGGTGGTATTTGGATCTTCAGTCATATTCACAATGAGGTTGTCTGGGCATTTGGATCTTCAGTCATATTCAAAACGAGGTTGTCTATCTTTCTTGCATGAGACCTCCATTCCCTACCCCTTCAACCAGAAGTTATGAGTAGCATGGACACAGATTAGTTTCTAAAAATCTAGGATGGGACGGCAAGGAACAGGTTTATATATATATATATATATATTTATTTATTTATTTGTGAACTCATACTAAAAATTTGTTTTAATTTATTATGGTTATGCTTAATACATCAACCAACTAATCGATCTTTCTAGAAACCAACTTTTAATAAGATGATGTCCTGAGGAGGAGATTTGGAATACCATTAGGCTCAATAGCCCTTTATAGGTTTGTCTCTAAGGAGTTTGTTTGTTTTGTCGTTACCATTTTATTGTTGTTCTTTTGGATTCATGATAGTTAGTGGAACTTTTTTTTAAAATAAATAAATAAATTATTAATTATCGTTATTATTTTTAAGAGCATTTCATATGATTTAATGAAATTAAAGTTTGGCTTCTTTTTAAAAAACTTCCATTAAGAAGATGAAAAATCAAAATACAATGGGTTCAATTGAAGCAAGGGGAAACTGGCAACACAAGGTGCTCCAAAATTCATGTAACCAAAAAGTCACGTCCTAAATACCCTCTCAAGAACTCTCTCTTTTGAGGAACACTTTCTTTTCCTTTCCAGCTTGGTGAAGCACAAAATAACCAAAATTCGCTGCCAAGGAATCCCTCACCTGGAATGGGGATACACAACAGCCTGTTCTAATGCCTCACAAATGTTTGAATTCTGTGCAAAGACCGAACTTTTATCAAAATTTTAAATGATTGATCATCTTAAAAGAAAAAGTAAATTTGAAGTCAAATAATGCTTAGGCCTTGATTAATACTTTTCTTATTTGTCACGATGCATTTATTTTTCTGTTTTCATTCATGCTAATTGTATTTATTTCCTATATTTGCTGCTGACACTTCTTAGGTTGCAAATATTCGCTTGAGCTTTCTATTGGTGGTTTATGACTAAATAGAATTCATGGGATTACATTTTACCGAATGCTTTCAGTTTATTGTGATCAGTCTTTGACACTCCTTAGTGGTGTGCTTTTGCAGATTAGTGGATGCAATTCTTCTGATGGAAGGCCAGGCGCTATCACTTCTGCAAAGAGTGCAACGTCATCACATATTGAAAGATCATTATTGAAGATTCCACAACTTGATGGACCAATGCCTGATCCTTATGATGATGTGCTTTCTACACCTAACGTTAGCTCTCTCTCTTTTCTTCCCTTAAAGTTATAGAATCTGCTATTGTTAATACAAGGAATATTTATGTAATAGTAATAGAAATTTTATACTTTTCACCCATCTTTTTACTTGTTTTGGTTTTGCAAGGTGGGTGCCTATTCTTCAGAAGGTTACTTGTCTGCCACTGTTTTTTGATTATCCTTTCATCTTTTTGTAGAAGTCAGGCATCCGTTCCATGTCTTCTTATAAGGATGTCCGTAGTCATAGAATGTTGTTTGATAGACAAAGCCTCGTGGAGCTAGGTACAAGGCACAAACTTATCATGGACGTCATGAAAGCAGGGATTGTTTGCTCGGAAAAATTAGAACCTTCCTCAATGAAAAAAATTATCACTATCGAGTTACACAGTATCGTAGAAACAATTAGGCACACACAAAATAATGTTTAAAATGTCAGCTGTACGATACAAATGTGTTTAACCAAGAATTTTTGTATGTGATTTCCTGGCTTCCTTCTAATGGTTAATACTAGAGCTCATGAGGTGTTTGGCTTTTGTTTTTGATGGAAGACAGAAGATCATTTGAATAAGTCGCAAGATTCTGTGTTGGCTAAAATAACAAGCATATGTCAGTGTCCTCCCTCTTTGTAATATCTCAATTTCTTTCAGGACTCACAATCCCTCAACCAAGCAACCCATGAATATCATGCTCCAATCCGATACGAACACCACATGCTCACTAACACAACAGTCCTCTCTGTAATATAAAAAATGATACCGACACCATCATAGCTACATGAAAGATGCTTATTTAAGTATTTGCCAATAGACAGCAACAAATCACTATGTTGCTTTTTCTTAAAGGTGCTAACAAATGTCCTCTCTAGTTGGTTATCAAGTAAAGGATGCAAAATTTTAGCACCTGTAGATTAAACCGTAATCAGTCTGTACTTTTTGGTATTTTGGAACTGCCTACTGCCTACTCTCTTCCATGATTGATGACGGGTTTTCCTGGATCTGCACATTTTATATGGTTTTTTCAACTCTTTGCTCCTGTCTGTGGTCAAATAACTTATTTTCTAGTCACAACTAATTAATATTGGACTGAACATGTTAGGCATTAAAATAATTGCTTGATTCTTCTGGTTTTTATTGTGTCCATCCTATGCGTTATCTGGGTTGCATTTTTGTTCATCCTACTTCTTGATGATTAGAATTCTTCGTATCATAATTAATGGAAATGGTTTTCTCATTGCTCTCTGTTCACTGAGTTGTGTTTCTGTTATTCACATTTCTGACATCCCCTGCAGATATACAATTACCAGGGTGTCTTCAATGAAGATTACAACATAGCAAATACACCAGCACCTAATGGTAAATGTTATGAAGTGTCTTCATGATTGTGACTATTCTATGACAAGTATTGAAATTTGGTTTTCTGTTAGAGAACGATCCGGAAAGAAGGTTTTAAATTAAAAATTGGTTTTTAACTTTCATATCGAAGTTTGTTTGTCTTCCACGTTAAATATTTTACATTGCATTTAATAGGAATTTTAAGTGGCCCTTTTAAACATAAAACACAAACAATTATTACATAAATGCTGTGTGCGGTTTAAAGCACAAACTTGCTGCTGGGTATAATGTAAAATCTTACCAACAAAAGCAATTGTTTTTATGTAATTCAATAATCAGAATAGAACGTTTGGGAGGACAAAAAACAGCAAGGAACAAGGGTGAAAACTAAGGTTCCCAAGAGAATTTAAAGCAGTAACAAAATTTGTCTCTAATTGTTTATCTTTTCTTTACAGATCCACCAGCTGGAACTCCTGCGGTTGTCACCCAGGATGATGTTAATGAAGAGGAGGAGGATAGCGAGCCTTCATTGAACGAAGACGACGACGATGACGATTTGGATGATGTGGATCAAGGAGAAGAATTGAGCACACAACATCTAGTTTTAGCTCAGTTTGACAAGGTACTTTGCCTCCTGTTTTTTTAGGTCCAGTTGTGCAGCATATCCTAGAGCATTTTTAGAATCTACCATGCCATTAAATATATATCATCATTACTTTTCATGTAATAGGTTACTCGTACCAAGAGTAGGTGGAAATGTACACTAAAAGATGGAATTATGCATATTAACAACAAGGACATTCTCTTCAACAAGGTGAATTTTTCCCTCCAAAACTAACAGGTTAGAAATATTAAACCGAGTCCGGTTTTCATGGAAGCTTGGTTTATTTGGTTTGTCAGGCAACTGGGGAATTCGACTTCTGA

mRNA sequence

ATGGCGACTTCCACAAGCTCTATCTACATCAATGTCATCGAAGATGTTATCAACAAGCTTCGTGACGAGTTTGTTGATAATGGTCCTGGAGAAGATGTTCTCAAGGAGCTTCAAGGAATGTGGGAGGCGAAGATGATGCAAGCGGGTGCTGTGACTGGTCCTATAGAGAGGTCTGCACCATCTAAGCCTACACCCGGAGGTCCGATAACTCCGGTTCACGATCTTAATGTTCCGTATGAGGACGCCACTACAGACTCCAATTCAAACCCTTTACCGGGAACTGCTGACAACGCGATGTATAATGTTCCTACTGGACCCAGCGACCACTCTGCATCTGGAACTGATGCTTCTCCAGCTGCCACCACTCCTGGGGGTAGCGGTAATAATAATGTTGAGGTCAGATCTGGAAGGCCAACCCCATATATGACGTCTACATTCTTCTTTCAGCAACCACCCTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGCCTACGTGGAGGGGCGTGAGGAAGCAGCAGACAGGGGAGCTGCTGGCGCTCATCCATCCCTTACACAGCGTAAGCGTGATGATTTTGCTTCCCAGTACCAAGCTAATGGGTTTATACCACAGCAAGATGGAGCTGGAGATGCTGCCAACAGTGTTTTTGAGATTGAGGTGGCTAGACTTGGCTCTGTGAGGCTACAAGATAATCTGGAATGTCATATTCACAATGAGGTTGTCTGGGCATTTGGATCTTCAGTCATATTCAAAACGAGAATTCATGGGATTACATTTTACCGAATGCTTTCAGTTTATTGTGATCAGTCTTTGACACTCCTTAGTGGTGTGCTTTTGCAGATTAGTGGATGCAATTCTTCTGATGGAAGGCCAGGCGCTATCACTTCTGCAAAGAGTGCAACGTCATCACATATTGAAAGATCATTATTGAAGATTCCACAACTTGATGGACCAATGCCTGATCCTTATGATGATGTGCTTTCTACACCTAACAAGTCAGGCATCCGTTCCATGTCTTCTTATAAGGATGTCCGTAGTCATAGAATGTTGTTTGATAGACAAAGCCTCGTGGAGCTAGGTACAAGGCACAAACTTATCATGGACGTCATGAAAGCAGGGATTGACTCACAATCCCTCAACCAAGCAACCCATGAATATCATGCTCCAATCCGATACGAACACCACATGCTCACTAACACAACAGTCCTCTCTATATACAATTACCAGGGTGTCTTCAATGAAGATTACAACATAGCAAATACACCAGCACCTAATGATCCACCAGCTGGAACTCCTGCGGTTGTCACCCAGGATGATGTTAATGAAGAGGAGGAGGATAGCGAGCCTTCATTGAACGAAGACGACGACGATGACGATTTGGATGATGTGGATCAAGGAGAAGAATTGAGCACACAACATCTAGTTTTAGCTCAGTTTGACAAGGTTACTCGTACCAAGAGTAGGTGGAAATGTACACTAAAAGATGGAATTATGCATATTAACAACAAGGACATTCTCTTCAACAAGGCAACTGGGGAATTCGACTTCTGA

Coding sequence (CDS)

ATGGCGACTTCCACAAGCTCTATCTACATCAATGTCATCGAAGATGTTATCAACAAGCTTCGTGACGAGTTTGTTGATAATGGTCCTGGAGAAGATGTTCTCAAGGAGCTTCAAGGAATGTGGGAGGCGAAGATGATGCAAGCGGGTGCTGTGACTGGTCCTATAGAGAGGTCTGCACCATCTAAGCCTACACCCGGAGGTCCGATAACTCCGGTTCACGATCTTAATGTTCCGTATGAGGACGCCACTACAGACTCCAATTCAAACCCTTTACCGGGAACTGCTGACAACGCGATGTATAATGTTCCTACTGGACCCAGCGACCACTCTGCATCTGGAACTGATGCTTCTCCAGCTGCCACCACTCCTGGGGGTAGCGGTAATAATAATGTTGAGGTCAGATCTGGAAGGCCAACCCCATATATGACGTCTACATTCTTCTTTCAGCAACCACCCTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGCCTACGTGGAGGGGCGTGAGGAAGCAGCAGACAGGGGAGCTGCTGGCGCTCATCCATCCCTTACACAGCGTAAGCGTGATGATTTTGCTTCCCAGTACCAAGCTAATGGGTTTATACCACAGCAAGATGGAGCTGGAGATGCTGCCAACAGTGTTTTTGAGATTGAGGTGGCTAGACTTGGCTCTGTGAGGCTACAAGATAATCTGGAATGTCATATTCACAATGAGGTTGTCTGGGCATTTGGATCTTCAGTCATATTCAAAACGAGAATTCATGGGATTACATTTTACCGAATGCTTTCAGTTTATTGTGATCAGTCTTTGACACTCCTTAGTGGTGTGCTTTTGCAGATTAGTGGATGCAATTCTTCTGATGGAAGGCCAGGCGCTATCACTTCTGCAAAGAGTGCAACGTCATCACATATTGAAAGATCATTATTGAAGATTCCACAACTTGATGGACCAATGCCTGATCCTTATGATGATGTGCTTTCTACACCTAACAAGTCAGGCATCCGTTCCATGTCTTCTTATAAGGATGTCCGTAGTCATAGAATGTTGTTTGATAGACAAAGCCTCGTGGAGCTAGGTACAAGGCACAAACTTATCATGGACGTCATGAAAGCAGGGATTGACTCACAATCCCTCAACCAAGCAACCCATGAATATCATGCTCCAATCCGATACGAACACCACATGCTCACTAACACAACAGTCCTCTCTATATACAATTACCAGGGTGTCTTCAATGAAGATTACAACATAGCAAATACACCAGCACCTAATGATCCACCAGCTGGAACTCCTGCGGTTGTCACCCAGGATGATGTTAATGAAGAGGAGGAGGATAGCGAGCCTTCATTGAACGAAGACGACGACGATGACGATTTGGATGATGTGGATCAAGGAGAAGAATTGAGCACACAACATCTAGTTTTAGCTCAGTTTGACAAGGTTACTCGTACCAAGAGTAGGTGGAAATGTACACTAAAAGATGGAATTATGCATATTAACAACAAGGACATTCTCTTCAACAAGGCAACTGGGGAATTCGACTTCTGA

Protein sequence

MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPSKPTPGGPITPVHDLNVPYEDATTDSNSNPLPGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVNIAYVEGREEAADRGAAGAHPSLTQRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTLLSGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKSGIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYEHHMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF*

Homology

[Close]

BLAST of CsaV3_7G010010 vs. NCBI nr
Match: KAE8645883.1 (hypothetical protein Csa_017710 [Cucumis sativus])

HSP 1 Score: 1026.5 bits (2653), Expect = 7.7e-296
Identity = 518/518 (100.00%), Postives = 518/518 (100.00%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEDATTDSNSNPLPGTADNAMYNVPTGPSDHSASGTDASPAA 120
           SKPTPGGPITPVHDLNVPYEDATTDSNSNPLPGTADNAMYNVPTGPSDHSASGTDASPAA
Sbjct: 61  SKPTPGGPITPVHDLNVPYEDATTDSNSNPLPGTADNAMYNVPTGPSDHSASGTDASPAA 120

Query: 121 TTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVNIAYVEGREEAADRGAA 180
           TTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVNIAYVEGREEAADRGAA
Sbjct: 121 TTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVNIAYVEGREEAADRGAA 180

Query: 181 GAHPSLTQRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEVARLGSVRLQDNLECHIHN 240
           GAHPSLTQRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEVARLGSVRLQDNLECHIHN
Sbjct: 181 GAHPSLTQRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEVARLGSVRLQDNLECHIHN 240

Query: 241 EVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTLLSGVLLQISGCNSSDGRPGAITSAK 300
           EVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTLLSGVLLQISGCNSSDGRPGAITSAK
Sbjct: 241 EVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTLLSGVLLQISGCNSSDGRPGAITSAK 300

Query: 301 SATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKSGIRSMSSYKDVRSHRMLFDRQSLVE 360
           SATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKSGIRSMSSYKDVRSHRMLFDRQSLVE
Sbjct: 301 SATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKSGIRSMSSYKDVRSHRMLFDRQSLVE 360

Query: 361 LGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYEHHMLTNTTVLSIYNYQGVFNEDYNI 420
           LGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYEHHMLTNTTVLSIYNYQGVFNEDYNI
Sbjct: 361 LGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYEHHMLTNTTVLSIYNYQGVFNEDYNI 420

Query: 421 ANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQ 480
           ANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQ
Sbjct: 421 ANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQ 480

Query: 481 FDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 519
           FDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF
Sbjct: 481 FDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 518

[Close]

BLAST of CsaV3_7G010010 vs. NCBI nr
Match: XP_004143132.2 (LOW QUALITY PROTEIN: transcription initiation factor IIA large subunit [Cucumis sativus])

HSP 1 Score: 643.7 bits (1659), Expect = 1.4e-180
Identity = 371/543 (68.32%), Postives = 371/543 (68.32%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEDA------TTD----------SNSNPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYE        T D             NPLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIXNPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVN 180
           GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYM       QPPSWMGQRTPVDVN
Sbjct: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYM-------QPPSWMGQRTPVDVN 180

Query: 181 IAYVEGREEAADRGAAGAHPSLTQ---------RKRDDFASQYQANGFIPQQDGAGDAAN 240
           IAYVEGREEAADRGAAGAHPSLTQ         RKRDDFASQYQANGFIPQQDGAGDAAN
Sbjct: 181 IAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAAN 240

Query: 241 SVFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTL 300
           SVFEIE                                                      
Sbjct: 241 SVFEIE------------------------------------------------------ 300

Query: 301 LSGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKS 360
                  ISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPN  
Sbjct: 301 -------ISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPN-- 360

Query: 361 GIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYE 420
                                                                       
Sbjct: 361 ------------------------------------------------------------ 402

Query: 421 HHMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 480
                      IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE
Sbjct: 421 -----------IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 402

Query: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 519
           DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE
Sbjct: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 402

[Close]

BLAST of CsaV3_7G010010 vs. NCBI nr
Match: XP_031745118.1 (LOW QUALITY PROTEIN: transcription initiation factor IIA subunit 1-like [Cucumis sativus])

HSP 1 Score: 641.3 bits (1653), Expect = 7.0e-180
Identity = 370/543 (68.14%), Postives = 370/543 (68.14%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEDA------TTD----------SNSNPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYE        T D              PLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQXPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVN 180
           GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYM       QPPSWMGQRTPVDVN
Sbjct: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYM-------QPPSWMGQRTPVDVN 180

Query: 181 IAYVEGREEAADRGAAGAHPSLTQ---------RKRDDFASQYQANGFIPQQDGAGDAAN 240
           IAYVEGREEAADRGAAGAHPSLTQ         RKRDDFASQYQANGFIPQQDGAGDAAN
Sbjct: 181 IAYVEGREEAADRGAAGAHPSLTQDFFMMNXGKRKRDDFASQYQANGFIPQQDGAGDAAN 240

Query: 241 SVFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTL 300
           SVFEIE                                                      
Sbjct: 241 SVFEIE------------------------------------------------------ 300

Query: 301 LSGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKS 360
                  ISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPN  
Sbjct: 301 -------ISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPN-- 360

Query: 361 GIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYE 420
                                                                       
Sbjct: 361 ------------------------------------------------------------ 402

Query: 421 HHMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 480
                      IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE
Sbjct: 421 -----------IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 402

Query: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 519
           DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE
Sbjct: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 402

[Close]

BLAST of CsaV3_7G010010 vs. NCBI nr
Match: XP_008464085.1 (PREDICTED: transcription initiation factor IIA subunit 1 [Cucumis melo])

HSP 1 Score: 629.4 bits (1622), Expect = 2.7e-176
Identity = 366/543 (67.40%), Postives = 367/543 (67.59%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEDA------TTD----------SNSNPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYE        T D              PLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVN 180
           GPSDHSASGTD SPAATTPGGSGNNNVEVRSGRPTPYM       QPPSWMGQRTPVDVN
Sbjct: 121 GPSDHSASGTDDSPAATTPGGSGNNNVEVRSGRPTPYM-------QPPSWMGQRTPVDVN 180

Query: 181 IAYVEGREEAADRGAAGAHPSLTQ---------RKRDDFASQYQANGFIPQQDGAGDAAN 240
           IAYVEGREE ADRGAAGAHPSLTQ         RKRDDFASQYQANGFIPQQDGAGDAAN
Sbjct: 181 IAYVEGREE-ADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAAN 240

Query: 241 SVFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTL 300
           SVFEIE                                                      
Sbjct: 241 SVFEIE------------------------------------------------------ 300

Query: 301 LSGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKS 360
                  ISGCNSSDGRPG ITSAKSATSS+IERSLLKIPQLDGPMPDPYDDVLSTPN  
Sbjct: 301 -------ISGCNSSDGRPGVITSAKSATSSYIERSLLKIPQLDGPMPDPYDDVLSTPN-- 360

Query: 361 GIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYE 420
                                                                       
Sbjct: 361 ------------------------------------------------------------ 401

Query: 421 HHMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 480
                      IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE
Sbjct: 421 -----------IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 401

Query: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 519
           DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE
Sbjct: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 401

[Close]

BLAST of CsaV3_7G010010 vs. NCBI nr
Match: XP_038901376.1 (transcription initiation factor IIA subunit 1-like [Benincasa hispida])

HSP 1 Score: 611.3 bits (1575), Expect = 7.7e-171
Identity = 355/543 (65.38%), Postives = 359/543 (66.11%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLR+EFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLREEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEDA------TTD----------SNSNPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYE        T D              PLPGTADNAMYN+PT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNIPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVN 180
           GPSDHSASGTDASPAATTPGGS NNNVEVRSGRPTPYM       QPPSWMGQRTPVDVN
Sbjct: 121 GPSDHSASGTDASPAATTPGGSTNNNVEVRSGRPTPYM-------QPPSWMGQRTPVDVN 180

Query: 181 IAYVEGREEAADRGAAGAHPSLTQ---------RKRDDFASQYQANGFIPQQDGAGDAAN 240
           IAYVEGR+E  DRGA GAHPSLTQ         RKRDDFASQYQANGFIPQQDGAGDA N
Sbjct: 181 IAYVEGRDE-PDRGATGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAVN 240

Query: 241 SVFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTL 300
           SVFEIE                                                      
Sbjct: 241 SVFEIE------------------------------------------------------ 300

Query: 301 LSGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKS 360
                  ISGCN+SDGRPG ITSAKS TSSHIERSLLKIPQLDGPMPDPYDDVLSTPN  
Sbjct: 301 -------ISGCNASDGRPGFITSAKSPTSSHIERSLLKIPQLDGPMPDPYDDVLSTPN-- 360

Query: 361 GIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYE 420
                                                                       
Sbjct: 361 ------------------------------------------------------------ 401

Query: 421 HHMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 480
                      IYNYQGVFNEDYNIANTPAPNDPP  TPAVVTQDDV EEEED EPSLNE
Sbjct: 421 -----------IYNYQGVFNEDYNIANTPAPNDPPVSTPAVVTQDDVGEEEEDDEPSLNE 401

Query: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 519
           DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE
Sbjct: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 401

[Close]

BLAST of CsaV3_7G010010 vs. ExPASy Swiss-Prot
Match: Q54G80 (Transcription initiation factor IIA subunit 1 OS=Dictyostelium discoideum OX=44689 GN=gtf2a1 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.1e-09
Identity = 47/108 (43.52%), Postives = 58/108 (53.70%), Query Frame = 0


Query: 414 FNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEE------EDSEPSLNEDDDDDDLDDVDQ 473
           FN D  I      ND           DD+++EE      +  E SL  D DDDD DD D 
Sbjct: 213 FNGDEVIPQNDGLND----------DDDLDDEEIGGGGGKVEEDSLGSDLDDDDDDDPDP 272

Query: 474 GEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 516
                 +H VL Q++KV+R K++ KC  KDGIMH+N KD LFNKA GE
Sbjct: 273 ----IIEHFVLCQYEKVSRIKNKRKCNFKDGIMHLNGKDTLFNKANGE 306

[Close]

BLAST of CsaV3_7G010010 vs. ExPASy Swiss-Prot
Match: Q9USU9 (Transcription initiation factor IIA large subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=toa1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.7e-08
Identity = 38/104 (36.54%), Postives = 54/104 (51.92%), Query Frame = 0


Query: 417 DYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELST--Q 476
           D  I +      PP  TP              S+ ++N D DD D D+  + EE S   Q
Sbjct: 279 DGTIEDNEDEKKPPVDTP--------------SDEAINSDLDDPDSDEAPETEEGSDIGQ 338

Query: 477 HLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 519
            +VL  +DKV   K++WKC  +DG++ +N KD LF KA GEF++
Sbjct: 339 AIVLCLYDKVNHHKNKWKCVFRDGVVGVNGKDYLFFKANGEFEW 368

[Close]

BLAST of CsaV3_7G010010 vs. ExPASy Swiss-Prot
Match: P52654 (Transcription initiation factor IIA subunit 1 OS=Drosophila melanogaster OX=7227 GN=TfIIA-L PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 4.3e-07
Identity = 30/86 (34.88%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 440 DDVNEEEEDSEPSLNED-------DDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWK 499
           DD + +++D E + +ED       + +DD+ D D  E   T ++++ Q+DK+TR++++WK
Sbjct: 281 DDDDLDKDDDEDAEHEDAAEEEPLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWK 340

Query: 500 CTLKDGIMHINNKDILFNKATGEFDF 519
             LKDGIM++  KD +F K+ G+ ++
Sbjct: 341 FYLKDGIMNMRGKDYVFQKSNGDAEW 366

HSP 2 Score: 39.3 bits (90), Expect = 1.6e-01
Identity = 41/142 (28.87%), Postives = 57/142 (40.14%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPSK 62
           TS   +Y  VIEDVI  +RD F+D G  E VL+E++ +W  K++ + AV    +    S 
Sbjct: 6   TSVLKVYHAVIEDVITNVRDAFLDEGVDEQVLQEMKQVWRNKLLASKAVELSPDSGDGSH 65

Query: 63  PTPGGPITPVHDLNVPYEDATTDSNSNPLPGTADNAMYNVPTGPSDHSASGTDASPAATT 122
           P       P+   N     A           TA  +  ++    S  S  G  +S     
Sbjct: 66  P------PPIVANNPKSHKAANAKAKKAAAATAVTSHQHIGGNSSMSSLVGLKSSAGMAA 125

Query: 123 PGGSGNNNV----EVRSGRPTP 141
             G  N  V    EV S  P P
Sbjct: 126 GSGIRNGLVPIKQEVNSQNPPP 141

[Close]

BLAST of CsaV3_7G010010 vs. ExPASy Swiss-Prot
Match: P52655 (Transcription initiation factor IIA subunit 1 OS=Homo sapiens OX=9606 GN=GTF2A1 PE=1 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 4.3e-07
Identity = 39/115 (33.91%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 424 PAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDD-----------------DLDDV- 483
           PA    P       T D  +EE+ED E   ++D+++D                   DDV 
Sbjct: 262 PAQTQAPLVLQVDGTGDTSSEEDEDEEEDYDDDEEEDKEKDGAEDGQVEEEPLNSEDDVS 321

Query: 484 -DQGEEL-STQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 519
            ++G+EL  T+++V+ Q+DK+ R+K++WK  LKDGIM++N +D +F+KA G+ ++
Sbjct: 322 DEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 376

HSP 2 Score: 54.3 bits (129), Expect = 4.8e-06
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 8  IYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG 54
          +Y +VIEDVIN +RD F+D+G  E VL EL+ +WE K+MQ+ AV G
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDG 58

[Close]

BLAST of CsaV3_7G010010 vs. ExPASy Swiss-Prot
Match: Q99PM3 (Transcription initiation factor IIA subunit 1 OS=Mus musculus OX=10090 GN=Gtf2a1 PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 4.3e-07
Identity = 39/115 (33.91%), Postives = 66/115 (57.39%), Query Frame = 0


Query: 424 PAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNEDDDDD-----------------DLDDV- 483
           PA    P       T D  +EE+ED E   ++D+++D                   DDV 
Sbjct: 264 PAQQQAPLVLQVDGTGDTSSEEDEDEEEDYDDDEEEDKEKDGAEDGQVEEEPLNSEDDVS 323

Query: 484 -DQGEEL-STQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 519
            ++G+EL  T+++V+ Q+DK+ R+K++WK  LKDGIM++N +D +F+KA G+ ++
Sbjct: 324 DEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 378

HSP 2 Score: 54.3 bits (129), Expect = 4.8e-06
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 8  IYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG 54
          +Y +VIEDVIN +RD F+D+G  E VL EL+ +WE K+MQ+ AV G
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDG 58

[Close]

BLAST of CsaV3_7G010010 vs. ExPASy TrEMBL
Match: A0A0A0KE66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188660 PE=3 SV=1)

HSP 1 Score: 641.7 bits (1654), Expect = 2.6e-180
Identity = 370/543 (68.14%), Postives = 370/543 (68.14%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 135 MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 194

Query: 61  SKPTPGGPITPVHDLNVPYEDA------TTD----------SNSNPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYE        T D              PLPGTADNAMYNVPT
Sbjct: 195 SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 254

Query: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVN 180
           GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYM       QPPSWMGQRTPVDVN
Sbjct: 255 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYM-------QPPSWMGQRTPVDVN 314

Query: 181 IAYVEGREEAADRGAAGAHPSLTQ---------RKRDDFASQYQANGFIPQQDGAGDAAN 240
           IAYVEGREEAADRGAAGAHPSLTQ         RKRDDFASQYQANGFIPQQDGAGDAAN
Sbjct: 315 IAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAAN 374

Query: 241 SVFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTL 300
           SVFEIE                                                      
Sbjct: 375 SVFEIE------------------------------------------------------ 434

Query: 301 LSGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKS 360
                  ISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPN  
Sbjct: 435 -------ISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPN-- 494

Query: 361 GIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYE 420
                                                                       
Sbjct: 495 ------------------------------------------------------------ 536

Query: 421 HHMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 480
                      IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE
Sbjct: 555 -----------IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 536

Query: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 519
           DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE
Sbjct: 615 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 536

[Close]

BLAST of CsaV3_7G010010 vs. ExPASy TrEMBL
Match: A0A1S3CM61 (transcription initiation factor IIA subunit 1 OS=Cucumis melo OX=3656 GN=LOC103502057 PE=3 SV=1)

HSP 1 Score: 629.4 bits (1622), Expect = 1.3e-176
Identity = 366/543 (67.40%), Postives = 367/543 (67.59%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEDA------TTD----------SNSNPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYE        T D              PLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVN 180
           GPSDHSASGTD SPAATTPGGSGNNNVEVRSGRPTPYM       QPPSWMGQRTPVDVN
Sbjct: 121 GPSDHSASGTDDSPAATTPGGSGNNNVEVRSGRPTPYM-------QPPSWMGQRTPVDVN 180

Query: 181 IAYVEGREEAADRGAAGAHPSLTQ---------RKRDDFASQYQANGFIPQQDGAGDAAN 240
           IAYVEGREE ADRGAAGAHPSLTQ         RKRDDFASQYQANGFIPQQDGAGDAAN
Sbjct: 181 IAYVEGREE-ADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAAN 240

Query: 241 SVFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTL 300
           SVFEIE                                                      
Sbjct: 241 SVFEIE------------------------------------------------------ 300

Query: 301 LSGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKS 360
                  ISGCNSSDGRPG ITSAKSATSS+IERSLLKIPQLDGPMPDPYDDVLSTPN  
Sbjct: 301 -------ISGCNSSDGRPGVITSAKSATSSYIERSLLKIPQLDGPMPDPYDDVLSTPN-- 360

Query: 361 GIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYE 420
                                                                       
Sbjct: 361 ------------------------------------------------------------ 401

Query: 421 HHMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 480
                      IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE
Sbjct: 421 -----------IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 401

Query: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 519
           DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE
Sbjct: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 401

[Close]

BLAST of CsaV3_7G010010 vs. ExPASy TrEMBL
Match: A0A5D3CVW1 (Transcription initiation factor IIA subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00280 PE=3 SV=1)

HSP 1 Score: 611.3 bits (1575), Expect = 3.7e-171
Identity = 358/536 (66.79%), Postives = 359/536 (66.98%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEDA------TTD----------SNSNPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYE        T D              PLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVN 180
           GPSDHSASGTD SPAATTPGGSGNNNV VRSGRPTPYM       QPPSWMGQRTPVDVN
Sbjct: 121 GPSDHSASGTDDSPAATTPGGSGNNNVVVRSGRPTPYM-------QPPSWMGQRTPVDVN 180

Query: 181 IAYVEGREEAADRGAAGAHPSLTQ---------RKRDDFASQYQANGFIPQQDGAGDAAN 240
           IAYVEGREE ADRGAAGAHPSLTQ         RKRDDFASQYQANGFIPQQDGAGDAAN
Sbjct: 181 IAYVEGREE-ADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAAN 240

Query: 241 SVFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTL 300
           SVFEIE                                                      
Sbjct: 241 SVFEIE------------------------------------------------------ 300

Query: 301 LSGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKS 360
                  ISGCNSSDGRPG ITSAKSATSS+IERSLLKIPQLDGPMPDPYDDVLSTPN  
Sbjct: 301 -------ISGCNSSDGRPGVITSAKSATSSYIERSLLKIPQLDGPMPDPYDDVLSTPN-- 360

Query: 361 GIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYE 420
                                                                       
Sbjct: 361 ------------------------------------------------------------ 394

Query: 421 HHMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 480
                      IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE
Sbjct: 421 -----------IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 394

Query: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK 512
           DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK
Sbjct: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK 394

[Close]

BLAST of CsaV3_7G010010 vs. ExPASy TrEMBL
Match: A0A6J1FUX4 (transcription initiation factor IIA subunit 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448672 PE=3 SV=1)

HSP 1 Score: 591.3 bits (1523), Expect = 4.0e-165
Identity = 347/543 (63.90%), Postives = 358/543 (65.93%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MA STSSIYINVIEDV+NKLRDEF DNGPGEDVLKELQGMWEAKMMQAGAV GPIERSAP
Sbjct: 1   MAISTSSIYINVIEDVVNKLRDEFTDNGPGEDVLKELQGMWEAKMMQAGAVNGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEDA------TTD----------SNSNPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYE        T D              PLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVN 180
           GPSDHSASGTDASPA TTPGGS  +NV+VRSGRPT +M       QPPSWMGQ+ PVDVN
Sbjct: 121 GPSDHSASGTDASPAVTTPGGSA-SNVDVRSGRPTQFM-------QPPSWMGQKAPVDVN 180

Query: 181 IAYVEGREEAADRGAAGAHPSLTQ---------RKRDDFASQYQANGFIPQQDGAGDAAN 240
           IAYVEGR+E ADRG    HP+LTQ         RKRD FASQYQ NGFIPQQDGAGDAAN
Sbjct: 181 IAYVEGRDE-ADRGV--PHPALTQDFFMMNSGKRKRDGFASQYQTNGFIPQQDGAGDAAN 240

Query: 241 SVFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTL 300
           SVFEIE                                                  SL L
Sbjct: 241 SVFEIE--------------------------------------------------SLKL 300

Query: 301 LSGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKS 360
           L G LLQISGCN+SDGRPG ITSAKSAT +HIERSL KIPQLDGP+PDPYDDVLSTPN  
Sbjct: 301 LKGKLLQISGCNASDGRPGVITSAKSATLTHIERSLFKIPQLDGPIPDPYDDVLSTPN-- 360

Query: 361 GIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYE 420
                                                                       
Sbjct: 361 ------------------------------------------------------------ 409

Query: 421 HHMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 480
                      IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDV EEEED EPSLNE
Sbjct: 421 -----------IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVGEEEEDDEPSLNE 409

Query: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 519
           DDDDDDLDDVDQGEE+STQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE
Sbjct: 481 DDDDDDLDDVDQGEEVSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 409

[Close]

BLAST of CsaV3_7G010010 vs. ExPASy TrEMBL
Match: A0A6J1J8T3 (transcription initiation factor IIA subunit 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484486 PE=3 SV=1)

HSP 1 Score: 589.7 bits (1519), Expect = 1.2e-164
Identity = 346/543 (63.72%), Postives = 358/543 (65.93%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MA STSSIYINVIEDV+NKLRDEF DNGPGEDVLKELQGMWEAKMMQAGAV GPIERSAP
Sbjct: 1   MAISTSSIYINVIEDVVNKLRDEFTDNGPGEDVLKELQGMWEAKMMQAGAVNGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEDA------TTD----------SNSNPLPGTADNAMYNVPT 120
           SKPTPGGPITPVHDLNVPYE        T D              PLPGTADNAMYNVPT
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPGTADNAMYNVPT 120

Query: 121 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPSWMGQRTPVDVN 180
           GPSDHSASGTDASPA TTPGGS  +NV+VRSGRPT +M       QPPSWMGQ+ PVDVN
Sbjct: 121 GPSDHSASGTDASPAVTTPGGSA-SNVDVRSGRPTQFM-------QPPSWMGQKAPVDVN 180

Query: 181 IAYVEGREEAADRGAAGAHPSLTQ---------RKRDDFASQYQANGFIPQQDGAGDAAN 240
           IAYVEGR+E ADRG    HP+LTQ         RKRD FASQYQ NGFIPQQDGAGDAAN
Sbjct: 181 IAYVEGRDE-ADRGV--PHPALTQDFFMMNSGKRKRDGFASQYQTNGFIPQQDGAGDAAN 240

Query: 241 SVFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTL 300
           SVFEIE                                                  SL L
Sbjct: 241 SVFEIE--------------------------------------------------SLKL 300

Query: 301 LSGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKS 360
           L G LLQISGCN+SDGRPG ITSAKSAT +HI+RSL KIPQLDGP+PDPYDDVLSTPN  
Sbjct: 301 LKGKLLQISGCNASDGRPGVITSAKSATLTHIKRSLFKIPQLDGPIPDPYDDVLSTPN-- 360

Query: 361 GIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYE 420
                                                                       
Sbjct: 361 ------------------------------------------------------------ 409

Query: 421 HHMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNE 480
                      IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDV EEEED EPSLNE
Sbjct: 421 -----------IYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVGEEEEDDEPSLNE 409

Query: 481 DDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 519
           DDDDDDLDDVDQGEE+STQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE
Sbjct: 481 DDDDDDLDDVDQGEEVSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGE 409

[Close]

BLAST of CsaV3_7G010010 vs. TAIR 10
Match: AT1G07480.1 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 307.4 bits (786), Expect = 2.2e-83
Identity = 221/542 (40.77%), Postives = 272/542 (50.18%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRDEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPS 62
           T+TS++YI+VIEDV+NK+R+EF++N GPGE VL ELQG+WE KMMQAG + GPIERS+  
Sbjct: 5   TTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQ 64

Query: 63  KPTPGGPITPVHDLNVPYEDATTDSN----------------SNPLPGTADN-AMYNVPT 122
           KPTPGGP+T  HDLNVPYE                         PLPGTADN +MYN+PT
Sbjct: 65  KPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIPT 124

Query: 123 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPS-WMGQRTPVDV 182
           G SD+            TPG     N++V++ RP+PYM        PPS W   R  +DV
Sbjct: 125 GSSDY-----------PTPGTENGVNIDVKA-RPSPYM-------PPPSPWTNPR--LDV 184

Query: 183 NIAYVEGREEAADRGAAGAH-------PSLTQRKRDDFASQYQANGFIPQQDGAGDAANS 242
           N+AYV+GR+E  +RG +          PS  +RKRDD +  YQ  G IPQQDGAGDA   
Sbjct: 185 NVAYVDGRDE-PERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIP- 244

Query: 243 VFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTLL 302
                         + N EC        AF  + I   ++                    
Sbjct: 245 --------------EANFECD-------AFRITSIGDRKV-------------------- 304

Query: 303 SGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKSG 362
                           P    S+ S           KIPQ+DGPMPDPYD++LSTPN   
Sbjct: 305 ----------------PRDFFSSSS-----------KIPQVDGPMPDPYDEMLSTPN--- 364

Query: 363 IRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYEH 422
                                                                       
Sbjct: 365 ------------------------------------------------------------ 375

Query: 423 HMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNED 482
                     IY+YQG  +E++N A TPAPN+    TP  V  D +    ED E  LNED
Sbjct: 425 ----------IYSYQGP-SEEFNEARTPAPNEIQTSTPVAVQNDII----EDDEELLNED 375

Query: 483 DDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEF 519
           DDDD+LDD++ GE+++TQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA GEF
Sbjct: 485 DDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEF 375

[Close]

BLAST of CsaV3_7G010010 vs. TAIR 10
Match: AT1G07480.2 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 307.4 bits (786), Expect = 2.2e-83
Identity = 221/542 (40.77%), Postives = 272/542 (50.18%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRDEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPS 62
           T+TS++YI+VIEDV+NK+R+EF++N GPGE VL ELQG+WE KMMQAG + GPIERS+  
Sbjct: 5   TTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQ 64

Query: 63  KPTPGGPITPVHDLNVPYEDATTDSN----------------SNPLPGTADN-AMYNVPT 122
           KPTPGGP+T  HDLNVPYE                         PLPGTADN +MYN+PT
Sbjct: 65  KPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIPT 124

Query: 123 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPS-WMGQRTPVDV 182
           G SD+            TPG     N++V++ RP+PYM        PPS W   R  +DV
Sbjct: 125 GSSDY-----------PTPGTENGVNIDVKA-RPSPYM-------PPPSPWTNPR--LDV 184

Query: 183 NIAYVEGREEAADRGAAGAH-------PSLTQRKRDDFASQYQANGFIPQQDGAGDAANS 242
           N+AYV+GR+E  +RG +          PS  +RKRDD +  YQ  G IPQQDGAGDA   
Sbjct: 185 NVAYVDGRDE-PERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQDGAGDAIP- 244

Query: 243 VFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTLL 302
                         + N EC        AF  + I   ++                    
Sbjct: 245 --------------EANFECD-------AFRITSIGDRKV-------------------- 304

Query: 303 SGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKSG 362
                           P    S+ S           KIPQ+DGPMPDPYD++LSTPN   
Sbjct: 305 ----------------PRDFFSSSS-----------KIPQVDGPMPDPYDEMLSTPN--- 364

Query: 363 IRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYEH 422
                                                                       
Sbjct: 365 ------------------------------------------------------------ 375

Query: 423 HMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNED 482
                     IY+YQG  +E++N A TPAPN+    TP  V  D +    ED E  LNED
Sbjct: 425 ----------IYSYQGP-SEEFNEARTPAPNEIQTSTPVAVQNDII----EDDEELLNED 375

Query: 483 DDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEF 519
           DDDD+LDD++ GE+++TQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA GEF
Sbjct: 485 DDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEF 375

[Close]

BLAST of CsaV3_7G010010 vs. TAIR 10
Match: AT1G07470.1 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 306.6 bits (784), Expect = 3.8e-83
Identity = 220/542 (40.59%), Postives = 272/542 (50.18%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRDEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPS 62
           T+TS++YI+VIEDV+NK+R+EF++N GPGE VL ELQG+WE KMMQAG + GPIERS+  
Sbjct: 5   TTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQ 64

Query: 63  KPTPGGPITPVHDLNVPYEDATTDSN----------------SNPLPGTADN-AMYNVPT 122
           KPTPGGP+T  HDLNVPYE                         PLPGTADN +MYN+PT
Sbjct: 65  KPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPLPTPLPGTADNSSMYNIPT 124

Query: 123 GPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQPPS-WMGQRTPVDV 182
           G SD+            TPG     N++V++ RP+PYM        PPS W   R  +DV
Sbjct: 125 GSSDY-----------PTPGTENGVNIDVKA-RPSPYM-------PPPSPWTNPR--LDV 184

Query: 183 NIAYVEGREEAADRGAAGAH-------PSLTQRKRDDFASQYQANGFIPQQDGAGDAANS 242
           N+AYV+GR+E  +RG +          PS  +RKRDD ++ YQ  G IPQQDGA DA   
Sbjct: 185 NVAYVDGRDE-PERGNSNQQFTQDLFVPSSGKRKRDDSSAHYQNGGSIPQQDGASDAIP- 244

Query: 243 VFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFYRMLSVYCDQSLTLL 302
                         + N EC        A   + +   +I                    
Sbjct: 245 --------------EANFECA-------ALRITYVGDRKI-------------------- 304

Query: 303 SGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKSG 362
                           P  +  + S           KIPQ+DGPMPDPYD++LSTPN   
Sbjct: 305 ----------------PRDLIGSSS-----------KIPQVDGPMPDPYDEMLSTPN--- 364

Query: 363 IRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIDSQSLNQATHEYHAPIRYEH 422
                                                                       
Sbjct: 365 ------------------------------------------------------------ 375

Query: 423 HMLTNTTVLSIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEPSLNED 482
                     IY+YQG  NE++N A TPAPN+    TP  V  D +    ED E  LNED
Sbjct: 425 ----------IYSYQGP-NEEFNEARTPAPNEIQTSTPVAVPNDII----EDDEELLNED 375

Query: 483 DDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEF 519
           DDDD+LDD++ GE+++TQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKATGEF
Sbjct: 485 DDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKATGEF 375

[Close]

BLAST of CsaV3_7G010010 vs. TAIR 10
Match: AT5G59230.1 (transcription factor-related )

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-13
Identity = 37/80 (46.25%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 439 QDDVNEEEEDSEPSLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDG 498
           +D+   + +++E  LNEDDDD++ DD+D  ++++ QHLV+ QFDKV R+K++W+C    G
Sbjct: 109 RDEAIVDVDENEEPLNEDDDDEE-DDIDD-DDMNIQHLVMCQFDKVKRSKNKWECKFNAG 168

Query: 499 IMHINNKDILFNKATGEFDF 519
           +M IN K++LF++ATG+F+F
Sbjct: 169 VMQINGKNVLFSQATGDFNF 186

HSP 2 Score: 59.7 bits (143), Expect = 8.1e-09
Identity = 42/102 (41.18%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRDEFVDNGP-GEDVLKELQGMWEAKMMQAGAVTGPIERSAPS 62
           + TSS Y  VI+DVINK R + V NG   E VL ++Q MW+ KM+QAGA++G IE S+ S
Sbjct: 6   SDTSSSYNYVIDDVINKSRCDLVYNGELDESVLSQIQSMWKTKMIQAGAMSGTIETSSAS 65

Query: 63  KPTPGGPITPVHDLNVPYEDATTDSNSNPLPGTADNAMYNVP 104
            PT   P+     L  P  DA         P    +  Y +P
Sbjct: 66  IPTT--PVIVQTTLQTP--DAIPLPEKKMSPKKESDGFYYIP 103

The following BLAST results are available for this feature:

BLAST of CsaV3_7G010010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645883.1	7.7e-296	100.00	hypothetical protein Csa_017710 [Cucumis sativus]	[more]
XP_004143132.2	1.4e-180	68.32	LOW QUALITY PROTEIN: transcription initiation factor IIA large subunit [Cucumis ...	[more]
XP_031745118.1	7.0e-180	68.14	LOW QUALITY PROTEIN: transcription initiation factor IIA subunit 1-like [Cucumis...	[more]
XP_008464085.1	2.7e-176	67.40	PREDICTED: transcription initiation factor IIA subunit 1 [Cucumis melo]	[more]
XP_038901376.1	7.7e-171	65.38	transcription initiation factor IIA subunit 1-like [Benincasa hispida]	[more]

BLAST of CsaV3_7G010010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54G80	2.1e-09	43.52	Transcription initiation factor IIA subunit 1 OS=Dictyostelium discoideum OX=446...	[more]
Q9USU9	6.7e-08	36.54	Transcription initiation factor IIA large subunit OS=Schizosaccharomyces pombe (...	[more]
P52654	4.3e-07	34.88	Transcription initiation factor IIA subunit 1 OS=Drosophila melanogaster OX=7227...	[more]
P52655	4.3e-07	33.91	Transcription initiation factor IIA subunit 1 OS=Homo sapiens OX=9606 GN=GTF2A1 ...	[more]
Q99PM3	4.3e-07	33.91	Transcription initiation factor IIA subunit 1 OS=Mus musculus OX=10090 GN=Gtf2a1...	[more]

BLAST of CsaV3_7G010010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE66	2.6e-180	68.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188660 PE=3 SV=1	[more]
A0A1S3CM61	1.3e-176	67.40	transcription initiation factor IIA subunit 1 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A5D3CVW1	3.7e-171	66.79	Transcription initiation factor IIA subunit 1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1FUX4	4.0e-165	63.90	transcription initiation factor IIA subunit 1-like isoform X1 OS=Cucurbita mosch...	[more]
A0A6J1J8T3	1.2e-164	63.72	transcription initiation factor IIA subunit 1-like isoform X1 OS=Cucurbita maxim...	[more]

BLAST of CsaV3_7G010010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07480.1	2.2e-83	40.77	Transcription factor IIA, alpha/beta subunit	[more]
AT1G07480.2	2.2e-83	40.77	Transcription factor IIA, alpha/beta subunit	[more]
AT1G07470.1	3.8e-83	40.59	Transcription factor IIA, alpha/beta subunit	[more]
AT5G59230.1	2.4e-13	46.25	transcription factor-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004855	Transcription factor IIA, alpha/beta subunit	SMART	SM01371	TFIIA_2	coord: 7..518 e-value: 1.0E-66 score: 237.6
IPR004855	Transcription factor IIA, alpha/beta subunit	PFAM	PF03153	TFIIA	coord: 8..517 e-value: 4.8E-47 score: 161.9
IPR004855	Transcription factor IIA, alpha/beta subunit	PANTHER	PTHR12694	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1	coord: 1..518
IPR009088	Transcription factor IIA, beta-barrel	GENE3D	2.30.18.10		coord: 452..518 e-value: 1.2E-25 score: 90.8
IPR009088	Transcription factor IIA, beta-barrel	SUPERFAMILY	50784	Transcription factor IIA (TFIIA), beta-barrel domain	coord: 461..518
None	No IPR available	GENE3D	1.10.287.100		coord: 1..53 e-value: 2.3E-20 score: 73.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 440..466
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 421..466
None	No IPR available	PANTHER	PTHR12694:SF8	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1	coord: 1..518
None	No IPR available	CDD	cd07976	TFIIA_alpha_beta_like	coord: 473..518 e-value: 6.22723E-27 score: 102.603
None	No IPR available	CDD	cd07976	TFIIA_alpha_beta_like	coord: 5..62 e-value: 9.0463E-17 score: 73.7127
None	No IPR available	SUPERFAMILY	47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 4..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G010010.1	CsaV3_7G010010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005672	transcription factor TFIIA complex