CsaV3_7G008870 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G008870
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr7: 5537559 .. 5537729 (+)
RNA-Seq ExpressionCsaV3_7G008870
SyntenyCsaV3_7G008870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATACACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAA

mRNA sequence

ATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATACACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAA

Coding sequence (CDS)

ATGGGGATTCAGAGATTAGAACTTTGTTTGGAGCTTCTGCGAATGGCTATCAATTTCGTGGTGGTCGTTGCCGAATCCGTGGGCGACGTTATACACCGGGAATGTCAACCGCAAGCTCTGCCGACGGCGGGCGGTAGAGTTCCGGTTCCTTTTGTGGGCTTTTACCCCTAA

Protein sequence

MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP*
Homology
BLAST of CsaV3_7G008870 vs. NCBI nr
Match: KAA0031272.1 (hypothetical protein E6C27_scaffold139G00250 [Cucumis melo var. makuwa] >KGN43958.1 hypothetical protein Csa_017301 [Cucumis sativus] >TYK06724.1 hypothetical protein E5676_scaffold13G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 115.9 bits (289), Expect = 1.1e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

BLAST of CsaV3_7G008870 vs. NCBI nr
Match: XP_015874275.1 (uncharacterized protein LOC107411246 [Ziziphus jujuba])

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          M IQR+E+C+ELL+MAI FV+VVAE+VG VIH+   P  + ++    P+PF+GFYP
Sbjct: 1  MVIQRIEMCVELLKMAIEFVIVVAEAVGIVIHQNMSPAFIRSSAYPTPLPFIGFYP 56

BLAST of CsaV3_7G008870 vs. NCBI nr
Match: OAY29431.1 (hypothetical protein MANES_15G144200v8 [Manihot esculenta])

HSP 1 Score: 62.4 bits (150), Expect = 1.5e-06
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          M  QRLE+C++L+R+A+ FV +VAE++G VI ++   + +PT    VPVPFVGF P
Sbjct: 1  MMFQRLEMCIQLIRLALEFVFIVAEAIGIVIEQDSSHRYIPTQTFAVPVPFVGFLP 56

BLAST of CsaV3_7G008870 vs. NCBI nr
Match: KAB2042822.1 (hypothetical protein ES319_D02G244200v1 [Gossypium barbadense] >KAG4160081.1 hypothetical protein ERO13_D02G211700v2 [Gossypium hirsutum] >TYG80995.1 hypothetical protein ES288_D02G261900v1 [Gossypium darwinii] >TYH85421.1 hypothetical protein ES332_D02G265400v1 [Gossypium tomentosum] >TYI95055.1 hypothetical protein E1A91_D02G250500v1 [Gossypium mustelinum])

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-05
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGG-RVPVPFVGFYP 57
          M +QRLE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     PVP VGF P
Sbjct: 1  MVLQRLEMCVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATPVPLVGFLP 57

BLAST of CsaV3_7G008870 vs. NCBI nr
Match: XP_021286324.1 (uncharacterized protein LOC110418034 [Herrania umbratica])

HSP 1 Score: 58.9 bits (141), Expect = 1.6e-05
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 3  IQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGR----VPVPFVGFYP 57
          +QRLE+C+ELL++AI FV+VVAE+VG VIH   Q    P   GR     PVPFVGF P
Sbjct: 38 LQRLEICVELLKLAIEFVMVVAEAVGVVIH---QNDRAPVLTGRRSFAAPVPFVGFLP 92

BLAST of CsaV3_7G008870 vs. ExPASy TrEMBL
Match: A0A5D3C626 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00250 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.4e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

BLAST of CsaV3_7G008870 vs. ExPASy TrEMBL
Match: A0A0A0K3A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074910 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 5.4e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP
Sbjct: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 56

BLAST of CsaV3_7G008870 vs. ExPASy TrEMBL
Match: A0A6P3ZHL2 (uncharacterized protein LOC107411246 OS=Ziziphus jujuba OX=326968 GN=LOC107411246 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.6e-09
Identity = 31/56 (55.36%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          M IQR+E+C+ELL+MAI FV+VVAE+VG VIH+   P  + ++    P+PF+GFYP
Sbjct: 1  MVIQRIEMCVELLKMAIEFVIVVAEAVGIVIHQNMSPAFIRSSAYPTPLPFIGFYP 56

BLAST of CsaV3_7G008870 vs. ExPASy TrEMBL
Match: A0A2C9UG64 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G144200 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.1e-07
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGGRVPVPFVGFYP 57
          M  QRLE+C++L+R+A+ FV +VAE++G VI ++   + +PT    VPVPFVGF P
Sbjct: 1  MMFQRLEMCIQLIRLALEFVFIVAEAIGIVIEQDSSHRYIPTQTFAVPVPFVGFLP 56

BLAST of CsaV3_7G008870 vs. ExPASy TrEMBL
Match: A0A5D2M247 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D02G265400v1 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 6.0e-06
Identity = 29/57 (50.88%), Postives = 40/57 (70.18%), Query Frame = 0

Query: 1  MGIQRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTAGG-RVPVPFVGFYP 57
          M +QRLE+C+EL+++A+ FVVVVAE+VG VIH+   P  +  +     PVP VGF P
Sbjct: 1  MVLQRLEMCVELMKLAVEFVVVVAEAVGIVIHQNHSPPVMTASRSFATPVPLVGFLP 57

BLAST of CsaV3_7G008870 vs. TAIR 10
Match: AT3G19030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pyridoxine biosynthetic process, homoserine biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49500.1); Has 22 Blast hits to 22 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.0e-05
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 0

Query: 4  QRLELCLELLRMAINFVVVVAESVGDVIHRECQPQALPTA-GGR------VPVPFVGF 55
          Q+LE+C+EL+++A+ FV  VAESV +   +   P +LP   GGR      VP+P VGF
Sbjct: 4  QKLEICIELVKIAVVFVTTVAESVEEAFRK--PPPSLPAVHGGRRNNYAAVPIPLVGF 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0031272.11.1e-22100.00hypothetical protein E6C27_scaffold139G00250 [Cucumis melo var. makuwa] >KGN4395... [more]
XP_015874275.11.6e-0855.36uncharacterized protein LOC107411246 [Ziziphus jujuba][more]
OAY29431.11.5e-0650.00hypothetical protein MANES_15G144200v8 [Manihot esculenta][more]
KAB2042822.11.2e-0550.88hypothetical protein ES319_D02G244200v1 [Gossypium barbadense] >KAG4160081.1 hyp... [more]
XP_021286324.11.6e-0556.90uncharacterized protein LOC110418034 [Herrania umbratica][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C6265.4e-23100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0K3A15.4e-23100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G074910 PE=4 SV=1[more]
A0A6P3ZHL27.6e-0955.36uncharacterized protein LOC107411246 OS=Ziziphus jujuba OX=326968 GN=LOC10741124... [more]
A0A2C9UG647.1e-0750.00Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_15G144200 PE=4 SV=... [more]
A0A5D2M2476.0e-0650.88Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D02G265400v1 P... [more]
Match NameE-valueIdentityDescription
AT3G19030.11.0e-0544.83unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pyridoxi... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37705BNAA08G11710D PROTEINcoord: 1..56
NoneNo IPR availablePANTHERPTHR37705:SF1BNAA08G11710D PROTEINcoord: 1..56

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G008870.1CsaV3_7G008870.1mRNA