CsaV3_7G008000 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G008000
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	PUM-HD domain-containing protein
Location	chr7: 5003880 .. 5007682 (+)
RNA-Seq Expression	CsaV3_7G008000
Synteny	CsaV3_7G008000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAAGCGAAGAAGGAGAAGCGGTAAGAGCGATAACTCGAGAAGGTCGAATTTCGGAACGCGCGCTGCCGTTAATCCGTTCGGGTTCTTCGGATTTTAAATAATGTCGTTGTTGGGCTATGGGCTTAATTAGAGTTATTTTGGGCTGTGTTGAATTGGGCCTGTTGGGCTTTGGTCAGAATGTGAGGGAGAAGAAAATGGGGTATGGGGAAGTGAGGAGTGGAAGTTTAGGGTTGGTGGGTTTATTTATAATTAGTATTTTTTATTATTGTTGTTATTTTAGGAAAGTAGGTTTAAATCTTTTTGCCTCTTAATTTTTTTTTTAATATACTTTATATTATATGATATGGAAAAGAAGGAGAGGTGGTAGGACAAAAATAAAATTAGACTATTAATTAGATTAGTAAAAGTTTAAGTTCTTTATATTATAGCAATAGTTGAAAATGTAAATATCCCGTAACGTAGTAACCTTTACGTAAAGTAATAACATATAAGATTATTTATGTAATAAATAACAATGGTATAGTTAAAGTTATTTGTTTCAACTATCATGGGTTGACCTAGTAGTAAAAATGTCAAAAACTAACTAAGAGGTCACAACTCCTTAGAATCTATAAACGATACATCATATCACCAATGATATATATCACAATTATATGTACAGTGTATCACTGATGAATCATATTAGCTAGTAATAAAAGTCTGTTGCATAGTTTATCAACGACAAAATTTTGTCAATAATAGATTTTACTATATTTAAAATTCTTACAAATGTAGCTATACACTTTAACTATTACGTGTTATTGATTGCAACTACCCAAATTATAAAAGAAATGGGTGTATGTAGATATATTATTTTAGTTGGGTTAACCATAAGAAGATGGTGTTTCAAATCTATATATTACGAAAATGTCAAAAAAATCTTATGATTGAGTAAGCCATTTAAAGCCAAACCATCCATATAATGAGGAATGGACATCAAAAGTGTCAAAAATCTTATTATTGACTAAGGCATTTAAGCCCAAACCATTCTTATAATTATTCTTTTTTCCATTATAGTATTTTTGCAATTATAAAAATAAATAAATAAAAGAAAGATATTTCAGTTATATTTTTCATAGGGAAAAAAACCATTAGTTGATGAATGTGATGAACATTTTAATCACTATATATTTTCAAAACGTTTTGTCCTTATTAAAATCACTTTAAAATATATTTTTAATCCTTTCAAAACTAATTTTAATTTGATGATATAAAAATTATATTTAAAAATGTAAAATTAAGACATAGAAAAAATGATTTTGTCATATTTTAGAACAATTTTGAATATAACTTAATTATTCGAGGTTGATTTAAAACCTCTTGGAATATTAGAGATACGAAATATATGGTAGACTAAATCGACTAGTGTCACCCTATTTTGCAGTCACACGTTGTAAACATTTTCAGCATTATAAATTATACCTTTAAATTTTTAAATTTAAAAATTGGACAATCAAATCGTATTCAAATGTTTAAAATTAGACTCTCAAACTTACATAATTGTATAAGTTTAATGGTTCAATTTTAACATTTATGTTTCTAACTTTTACTATTATTGTAAGTTCGAACGGTTCAAATTTAACAATTTTAGAAATCTATGGATGATTTTTTTCAATTTTTTCATTTAAAAAACTAAATTCAATTTTCTTTTAAAGAAAAAAAAACAAAATTTAATACCCAAACAAATTTTCGTATAGTAAAATCTAATTAAAATGTTTTCAACCATAATTTTCTGAAGTTAAATTTCACTATTACAACGTATATTCTTTAATTTAAATATTACAAAACGTACTTTCAAATATAAATCTTCAATTTAAATATAACATTTTATTATATATATACTGAAAATGTATTATTAAAAAGGGAAATTATTATTAATAACAAAAAGAGAGAAAAAGGATAATAGTTTAAAAAAGAGAGAGAAAAATCAAAATCAATTTTTTGACCTAAATAATTAAAAAGAAAAAAAGAAAAAAAGAAGAAAAAGTTGAACGTATTTATCTATTTATCTTTACTTTTAAAAATCTCAAGTAGAATCTAAGAATCCTAATTTGATTACAAGAAGCATATATTACAATATTTGATTTTTCTTTTGTTTCCTTTTCCTATTCTAAGTTTCCTATTCCAAATATAATTTATGGAATTGTATATAAATATAACAATACTAAATTTCTTTCGATATAAACAAATTAAAAGTTTGGTGATCTTCGATCGAGCAAGAAATTTGAAATTTAGTTCTATATGCAACTTCATTATGTCATCGATGAAAGATAATGATAAACCTATGGTTTCTAATGACGACGATACGAACGATAATCATCGCTTATTTCCCATTCTTCAACAACTAACAACAACACATCTTCATTCACTAATTATTCATCCAATTGGAAATAAGTTTCTTCTCCATCTTCTTCAACCTCCCCATTGCCATCCAACCTTCATTAATCATCTTCTTCTCTCCCTAACCACTTATTCACGAGACCACTTTCTACCAATCTCTCTTCATTATCTCGGGTTAGTTCCTATATATATATTCTTTTACTTTTTGTTTATTATTTTCATTCCTATTCATTAATCTTTTTGTATGGTTAGACATCGACTTGTGGTGGCGTTAATCTCTCATCTTAAATACCCTTGTCAACAATGGATGATTGTATTACTGATGAGACCGCATGTCTTGACTTTGGCTAAAGACTTTCATAGTGGTCATCGAGTGATAAAGAGTTGCTTCCAAAACTTTTTGCCACAATCTAATGAGGTAATAATTACTTTTAAGAAAATAAGGTAACAAACTACTTTTATTGTTTTTTTTTAAATGAAAATTATTGAACGTAAAAAACAATAATACAGTCGGACCGGATATATACATTATACAATATACATATTATCACATGAATGCAGTTGATCATACTTAGAGTAGCACAAAATTGCTTGGAGTTGGCGAGAGGACAGGCAAGTTGTTGTATACTCCAAGAGTGCATTGAATATTCCAATAATAACTTGAGACAACTTCAAGAAGTTCTAATCTCTCCGTTGATTCAAGATGTCTATGATCTTTCAAAACATCCTTATGGGTATGTACATAAATTTCATTTCATTATCTTATACATGCATATATATATATTATTAATCCAAGGTTAACTAATTATTGATTATATGTTAATTGTTAACTGCAGCAACTATGTTATCCAATTTATGATTCAATTAGATGGAACAAACATAGGACGGAGAATAATCAAAGAACTTACACACAAATTTGTAGAACTTTCCATGGACAAGTATGGAAGCAATGTAGTGGAAAAATGTCTATCTTGTTGTGAAGGTATCTCTAATGACATTATCTTTGAAATTTTGGAGGGTAATGGTCGAGATCGACTCATCCAAATTTGTACAAACCAATATGGGAATTTTGTTGTTCAAACCGTCATGTCTATTGCTAAGGTTTGTGTTTATTTTTTTCCTCAGTTAACATACCTTTTCATTTTATATATTGAGAAATGTCAACATAAAATGTACACATTGTTGCTATATAAGTGGAAAGACCAATATTATGTCGTTACCTTCATAATCAAAATGCTTATGAAGAATCGTTAGTCTCTAACAGTGTTTTTTTTACGTTGTAGGGAAAAATTCGCAAGTTGCTTGAAAAAGCCATTAAGAGTCATTGGCTTGTTCTTCAACAGCATCTATATGGAAGAAATGTAATTTCATCAATTAGACGTGATAAAAAAAAGGCAAAATTATCGAAGTATGTTTGA

mRNA sequence

ATGGATAAAGCGAAGAAGGAGAAGCGACATCGACTTGTGGTGGCGTTAATCTCTCATCTTAAATACCCTTGTCAACAATGGATGATTGTATTACTGATGAGACCGCATGTCTTGACTTTGGCTAAAGACTTTCATAGTGGTCATCGAGTGATAAAGAGTTGCTTCCAAAACTTTTTGCCACAATCTAATGAGTTGATCATACTTAGAGTAGCACAAAATTGCTTGGAGTTGGCGAGAGGACAGGCAAGTTGTTGTATACTCCAAGAGTGCATTGAATATTCCAATAATAACTTGAGACAACTTCAAGAAGTTCTAATCTCTCCGTTGATTCAAGATGTCTATGATCTTTCAAAACATCCTTATGGCAACTATGTTATCCAATTTATGATTCAATTAGATGGAACAAACATAGGACGGAGAATAATCAAAGAACTTACACACAAATTTGTAGAACTTTCCATGGACAAGTATGGAAGCAATGTAGTGGAAAAATGTCTATCTTGTTGTGAAGGTATCTCTAATGACATTATCTTTGAAATTTTGGAGGGTAATGGTCGAGATCGACTCATCCAAATTTGTACAAACCAATATGGGAATTTTGTTGTTCAAACCGTCATGTCTATTGCTAAGGGAAAAATTCGCAAGTTGCTTGAAAAAGCCATTAAGAGTCATTGGCTTGTTCTTCAACAGCATCTATATGGAAGAAATGTAATTTCATCAATTAGACGTGATAAAAAAAAGGCAAAATTATCGAAGTATGTTTGA

Coding sequence (CDS)

ATGGATAAAGCGAAGAAGGAGAAGCGACATCGACTTGTGGTGGCGTTAATCTCTCATCTTAAATACCCTTGTCAACAATGGATGATTGTATTACTGATGAGACCGCATGTCTTGACTTTGGCTAAAGACTTTCATAGTGGTCATCGAGTGATAAAGAGTTGCTTCCAAAACTTTTTGCCACAATCTAATGAGTTGATCATACTTAGAGTAGCACAAAATTGCTTGGAGTTGGCGAGAGGACAGGCAAGTTGTTGTATACTCCAAGAGTGCATTGAATATTCCAATAATAACTTGAGACAACTTCAAGAAGTTCTAATCTCTCCGTTGATTCAAGATGTCTATGATCTTTCAAAACATCCTTATGGCAACTATGTTATCCAATTTATGATTCAATTAGATGGAACAAACATAGGACGGAGAATAATCAAAGAACTTACACACAAATTTGTAGAACTTTCCATGGACAAGTATGGAAGCAATGTAGTGGAAAAATGTCTATCTTGTTGTGAAGGTATCTCTAATGACATTATCTTTGAAATTTTGGAGGGTAATGGTCGAGATCGACTCATCCAAATTTGTACAAACCAATATGGGAATTTTGTTGTTCAAACCGTCATGTCTATTGCTAAGGGAAAAATTCGCAAGTTGCTTGAAAAAGCCATTAAGAGTCATTGGCTTGTTCTTCAACAGCATCTATATGGAAGAAATGTAATTTCATCAATTAGACGTGATAAAAAAAAGGCAAAATTATCGAAGTATGTTTGA

Protein sequence

MDKAKKEKRHRLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKAKLSKYV*

Homology

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BLAST of CsaV3_7G008000 vs. NCBI nr
Match: KAE8645845.1 (hypothetical protein Csa_017253 [Cucumis sativus])

HSP 1 Score: 513.1 bits (1320), Expect = 1.4e-141
Identity = 254/254 (100.00%), Postives = 254/254 (100.00%), Query Frame = 0


Query: 1   MDKAKKEKRHRLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLP 60
           MDKAKKEKRHRLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLP
Sbjct: 1   MDKAKKEKRHRLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLP 60

Query: 61  QSNELIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHP 120
           QSNELIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHP
Sbjct: 61  QSNELIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHP 120

Query: 121 YGNYVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEI 180
           YGNYVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEI
Sbjct: 121 YGNYVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEI 180

Query: 181 LEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISS 240
           LEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISS
Sbjct: 181 LEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISS 240

Query: 241 IRRDKKKAKLSKYV 255
           IRRDKKKAKLSKYV
Sbjct: 241 IRRDKKKAKLSKYV 254

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BLAST of CsaV3_7G008000 vs. NCBI nr
Match: XP_008455521.1 (PREDICTED: putative pumilio homolog 8, chloroplastic [Cucumis melo])

HSP 1 Score: 285.8 bits (730), Expect = 3.7e-73
Identity = 138/164 (84.15%), Postives = 147/164 (89.63%), Query Frame = 0


Query: 10  HRLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILR 69
           +R+VV LISHLKYPCQQWMI LLM PHVLTLAKDF  GHRVIKSCFQ+F PQ NELI+LR
Sbjct: 92  YRVVVTLISHLKYPCQQWMIALLMSPHVLTLAKDFQGGHRVIKSCFQSFSPQPNELILLR 151

Query: 70  VAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFM 129
           VAQNCLELAR QA CCILQECIEYSNNN RQL+EVLI+PLI+D YDLSKHPYGNYVIQFM
Sbjct: 152 VAQNCLELAREQAGCCILQECIEYSNNNFRQLREVLITPLIEDAYDLSKHPYGNYVIQFM 211

Query: 130 IQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGIS 174
           IQLDGTNIG R+IKELTHKFVELSMDKYGSNVVEKC+     IS
Sbjct: 212 IQLDGTNIGWRVIKELTHKFVELSMDKYGSNVVEKCVCLVVKIS 255

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BLAST of CsaV3_7G008000 vs. NCBI nr
Match: XP_022148742.1 (pumilio homolog 12-like [Momordica charantia])

HSP 1 Score: 209.1 bits (531), Expect = 4.3e-50
Identity = 110/241 (45.64%), Postives = 158/241 (65.56%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           + VV L+  L  P  Q +  +++  H + LAK    GH V+ +CF+N   Q NE+I+L +
Sbjct: 202 KAVVKLLCRLSNPQHQLLFAVVISHHGVALAKSSGPGHDVLINCFRNLSRQDNEMILLEI 261

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
           A N LELA+ +  CCIL  CI Y+   LR    VL++PLIQ+   LS H Y N+VIQF+I
Sbjct: 262 AHNSLELAKDKNGCCILPFCILYAEGTLR---GVLVTPLIQEARHLSTHFYANFVIQFLI 321

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEGNGRDRLI 190
           +LD  NIG R+I+ L +KFVEL + K GS+VVEKCL C E  +  IIFEI+E   ++  I
Sbjct: 322 ELDQANIGARVIQVLRNKFVELCLSKAGSHVVEKCLGCGEDEAAGIIFEIME--NKENWI 381

Query: 191 QICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKAKL 250
           Q+ TNQYGN+V Q  +S+AKG+   LL +AIKS   +L+ H YGR+V+++  + K+++ +
Sbjct: 382 QVFTNQYGNYVAQKALSVAKGEAYNLLVRAIKSQQHILEFHPYGRSVVAAAVKRKRRSSI 437

Query: 251 S 252
           S
Sbjct: 442 S 437

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BLAST of CsaV3_7G008000 vs. NCBI nr
Match: XP_020552057.1 (putative pumilio homolog 8, chloroplastic [Sesamum indicum])

HSP 1 Score: 156.0 bits (393), Expect = 4.4e-34
Identity = 82/237 (34.60%), Postives = 141/237 (59.49%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           R V  LI H+    Q+ ++V +++   + L KD  +GH VI+ C + F  + N+ I+  V
Sbjct: 399 RAVQKLIEHVTTAKQRALVVSVLKRVTVALIKD-TNGHHVIQHCLKFFSSEDNKHILNVV 458

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
           A NCL++A  ++ CC+LQ+C+ ++    R   + LI+ +  +   LS+HPYGNYV+Q+++
Sbjct: 459 ADNCLDIATDKSGCCVLQQCVAHAQGEPR---DRLIAEITSNSLILSEHPYGNYVVQYIL 518

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEGNGRDRLI 190
            L   ++   II +LT  +V LSM+KYGSNVVEKCL   EG  + ++  I E       +
Sbjct: 519 GLRIPHVTADIIAQLTGSYVSLSMNKYGSNVVEKCLREAEG--DQVLHIINEITNSPNFL 578

Query: 191 QICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKK 248
           ++  + YGN+V Q+ ++I+KG +R  +   I  H+  L  H +G+ V++  +  K++
Sbjct: 579 RVLQDPYGNYVAQSALNISKGTVRNNMNNLIYFHYAFLHSHPHGKRVLARTKGSKQR 629

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BLAST of CsaV3_7G008000 vs. NCBI nr
Match: XP_022725062.1 (putative pumilio homolog 8, chloroplastic [Durio zibethinus])

HSP 1 Score: 155.6 bits (392), Expect = 5.7e-34
Identity = 78/241 (32.37%), Postives = 144/241 (59.75%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           R V   +  +    Q+ +++ +++P  +TL  D H GH +I+ CF  F  +  +L++  +
Sbjct: 320 RAVQKFMERISTQEQRSILLSVLKPIAVTLTNDIH-GHHIIEQCFNKFSNEDTKLLVDEI 379

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
            ++CL++A  ++ CC+LQ+C++++    R+    L++ +  + + LS+HPYGNYV+Q+++
Sbjct: 380 VEHCLDIATDKSGCCVLQQCLDHAKAEARKR---LLAEITANAFVLSEHPYGNYVVQYVL 439

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCL-SCCEGISNDIIFEILEGNGRDRL 190
            +   ++   II  L   +V LSM+KYGSNVVEKCL    EG S  II EI+        
Sbjct: 440 GMRVPHVTSNIIVHLGGSYVTLSMNKYGSNVVEKCLKDAGEGHSARIITEIMHD---PDF 499

Query: 191 IQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKAK 250
           +++  + YGN+VVQ+ + ++KG +   L + I+ H+  L  HL+G+ V++  +  K + +
Sbjct: 500 LKVLQDPYGNYVVQSALHVSKGDLHNTLVEFIQRHYPFLHSHLFGKKVLARTKWRKNRLR 553

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BLAST of CsaV3_7G008000 vs. ExPASy Swiss-Prot
Match: Q9LM20 (Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APUM8 PE=3 SV=2)

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-28
Identity = 72/229 (31.44%), Postives = 127/229 (55.46%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           R+V  L+  +K   Q  ++   +RP  L L +D +  H VI+ C Q    + NE I    
Sbjct: 289 RVVQRLVESIKTRKQISLVKSALRPGFLNLIRDLNGNH-VIQRCLQCLSTEDNEFIFEDA 348

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
            + C+++A  +  CC+LQ+CI YS+   R   E L++ + ++   L++ PYGNY +QF++
Sbjct: 349 TKFCIDIATHRHGCCVLQKCIAYSSGLQR---EKLVTEISRNSLFLAQDPYGNYAVQFVL 408

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEGNGRDRLI 190
           +L   +    ++ +L   +VELSM K+ S++VE+CL+ C      I+ E++     D LI
Sbjct: 409 ELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCPESRPQIVRELISVPHFDILI 468

Query: 191 QICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVIS 240
           Q   + Y NFV+Q  +++ KG +   L + I+ H  +L+ + Y + + S
Sbjct: 469 Q---DPYANFVIQAALAVTKGSLHATLVEVIRPH-SILRNNPYCKRIFS 509

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BLAST of CsaV3_7G008000 vs. ExPASy Swiss-Prot
Match: Q9C9R6 (Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APUM7 PE=3 SV=2)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-27
Identity = 73/229 (31.88%), Postives = 128/229 (55.90%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           R+V  L+  ++   Q  ++ L +RP  L L KD +  H VI+ C Q    + N+ I    
Sbjct: 424 RVVQRLVETIRSGKQISLVKLALRPGFLDLIKDLNGNH-VIQRCLQCLSTEDNKFIFDAA 483

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
            + C E+A  +  CC+LQ+CI YS   +RQ +E LI+ + ++   L++ P+GNY +QF+I
Sbjct: 484 TKFCTEIATHRHGCCVLQKCIAYS---MRQQREKLIAEISRNSLLLAQDPFGNYAVQFVI 543

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEGNGRDRLI 190
           +L   +    ++ +L   +V+LSM K+ S++VE+CL  C      I+ E++     D+L+
Sbjct: 544 ELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRPQIVRELVSVPHFDQLL 603

Query: 191 QICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVIS 240
           Q   + Y NFV+Q  ++  KG +   L + I+ H  +L+ + Y + + S
Sbjct: 604 Q---DPYANFVIQAALAATKGPLHASLVEVIRPH-SILRNNPYCKRIFS 644

[Close]

BLAST of CsaV3_7G008000 vs. ExPASy Swiss-Prot
Match: Q9LVC3 (Pumilio homolog 12 OS=Arabidopsis thaliana OX=3702 GN=APUM12 PE=2 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-27
Identity = 74/235 (31.49%), Postives = 124/235 (52.77%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           R V  ++   K   +  +I+  ++  ++ L K+ +  H V++ C Q  LP   + +    
Sbjct: 368 RAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNH-VVQRCLQYLLPYCGKFLFEAA 427

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
             +C+ELA  +  CC+LQ+C+ YS    +Q    L+S +  +   LS+ P+GNYV+Q++ 
Sbjct: 428 ITHCVELATDRHGCCVLQKCLGYSEGEQKQ---HLVSEIASNALLLSQDPFGNYVLQYVF 487

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEGNGRDRLI 190
           +L        I+++L   + ELSM K  SNVVEKCL   +      I   L   G  RL 
Sbjct: 488 ELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYG--RLD 547

Query: 191 QICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDK 246
           Q+  + YGN+V+Q  +  +KG +  LL  AIK +   L+ + YG+ V+S++   K
Sbjct: 548 QVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVLSALSSKK 596

[Close]

BLAST of CsaV3_7G008000 vs. ExPASy Swiss-Prot
Match: P0DN95 (Pumilio homolog 15 OS=Arabidopsis thaliana OX=3702 GN=APUM15 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-25
Identity = 67/204 (32.84%), Postives = 112/204 (54.90%), Query Frame = 0


Query: 38  LTLAKDFHSGHRVIKSCFQNFLPQSNELIILRVAQNCLELARGQASCCILQECIEYSNNN 97
           L L KD    HRVI  CF  F P     ++  + QNC ++A  Q  CC+L++ I  S+  
Sbjct: 246 LLLTKDV-IAHRVILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCMLKKLIRQSS-- 305

Query: 98  LRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKY 157
            R+L++ LI  +I     L  + YGNYV+Q++++L    +   + K L   +V+LS DKY
Sbjct: 306 -RELRDPLIKEIISIAVRLCGNCYGNYVVQYLLRLKDYEVTSALSKHLDGNYVQLSYDKY 365

Query: 158 GSNVVEKCLSCCEGISNDIIFEILEGNGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLL 217
           GS+VV+KCL   E  S  II E+L       +  +  + YG++V+QT   +++  +R +L
Sbjct: 366 GSHVVQKCLESREFSSRRIIAELLSD-----IDSLLVDPYGDYVIQTAWIVSEDHVRHVL 425

Query: 218 EKAIKSHWLVLQQHLYGRNVISSI 242
              I  +   ++ ++YGR ++  +
Sbjct: 426 LFYINRNVPFMRCNVYGRKLLQKL 440

[Close]

BLAST of CsaV3_7G008000 vs. ExPASy Swiss-Prot
Match: P25339 (Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PUF4 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 4.7e-23
Identity = 61/203 (30.05%), Postives = 112/203 (55.17%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           R +  LI  +K   +  ++V  +RP+ + L+KD +  H VI+ C Q   P++ + I   +
Sbjct: 651 RALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNH-VIQKCLQRLKPENFQFIFDAI 710

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
           + +C+++A  +  CC+LQ C+++      +  + L   L+  V  L+  P+GNYV+Q++I
Sbjct: 711 SDSCIDIATHRHGCCVLQRCLDHGTT---EQCDNLCDKLLALVDKLTLDPFGNYVVQYII 770

Query: 131 QLDGT----NIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEGNGR 190
             +      +   +I+  L  + +ELS+ K+GSNV+EK L     +S  +I EIL   G 
Sbjct: 771 TKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAI-VSEPMILEILNNGGE 830

Query: 191 DRLIQICTNQYGNFVVQTVMSIA 210
             +  +  + YGN+V+QT + I+
Sbjct: 831 TGIQSLLNDSYGNYVLQTALDIS 848

[Close]

BLAST of CsaV3_7G008000 vs. ExPASy TrEMBL
Match: A0A0A0K7S4 (PUM-HD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071550 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 8.1e-103
Identity = 190/191 (99.48%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 64  ELIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGN 123
           +LIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGN
Sbjct: 2   QLIILRVAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGN 61

Query: 124 YVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEG 183
           YVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEG
Sbjct: 62  YVIQFMIQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEG 121

Query: 184 NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR 243
           NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR
Sbjct: 122 NGRDRLIQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRR 181

Query: 244 DKKKAKLSKYV 255
           DKKKAKLSKYV
Sbjct: 182 DKKKAKLSKYV 192

[Close]

BLAST of CsaV3_7G008000 vs. ExPASy TrEMBL
Match: A0A1S3C139 (putative pumilio homolog 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495672 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.8e-73
Identity = 138/164 (84.15%), Postives = 147/164 (89.63%), Query Frame = 0


Query: 10  HRLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILR 69
           +R+VV LISHLKYPCQQWMI LLM PHVLTLAKDF  GHRVIKSCFQ+F PQ NELI+LR
Sbjct: 92  YRVVVTLISHLKYPCQQWMIALLMSPHVLTLAKDFQGGHRVIKSCFQSFSPQPNELILLR 151

Query: 70  VAQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFM 129
           VAQNCLELAR QA CCILQECIEYSNNN RQL+EVLI+PLI+D YDLSKHPYGNYVIQFM
Sbjct: 152 VAQNCLELAREQAGCCILQECIEYSNNNFRQLREVLITPLIEDAYDLSKHPYGNYVIQFM 211

Query: 130 IQLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGIS 174
           IQLDGTNIG R+IKELTHKFVELSMDKYGSNVVEKC+     IS
Sbjct: 212 IQLDGTNIGWRVIKELTHKFVELSMDKYGSNVVEKCVCLVVKIS 255

[Close]

BLAST of CsaV3_7G008000 vs. ExPASy TrEMBL
Match: A0A6J1D5W5 (pumilio homolog 12-like OS=Momordica charantia OX=3673 GN=LOC111017335 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.1e-50
Identity = 110/241 (45.64%), Postives = 158/241 (65.56%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           + VV L+  L  P  Q +  +++  H + LAK    GH V+ +CF+N   Q NE+I+L +
Sbjct: 202 KAVVKLLCRLSNPQHQLLFAVVISHHGVALAKSSGPGHDVLINCFRNLSRQDNEMILLEI 261

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
           A N LELA+ +  CCIL  CI Y+   LR    VL++PLIQ+   LS H Y N+VIQF+I
Sbjct: 262 AHNSLELAKDKNGCCILPFCILYAEGTLR---GVLVTPLIQEARHLSTHFYANFVIQFLI 321

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEGNGRDRLI 190
           +LD  NIG R+I+ L +KFVEL + K GS+VVEKCL C E  +  IIFEI+E   ++  I
Sbjct: 322 ELDQANIGARVIQVLRNKFVELCLSKAGSHVVEKCLGCGEDEAAGIIFEIME--NKENWI 381

Query: 191 QICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKAKL 250
           Q+ TNQYGN+V Q  +S+AKG+   LL +AIKS   +L+ H YGR+V+++  + K+++ +
Sbjct: 382 QVFTNQYGNYVAQKALSVAKGEAYNLLVRAIKSQQHILEFHPYGRSVVAAAVKRKRRSSI 437

Query: 251 S 252
           S
Sbjct: 442 S 437

[Close]

BLAST of CsaV3_7G008000 vs. ExPASy TrEMBL
Match: A0A6P5XBS2 (putative pumilio homolog 8, chloroplastic OS=Durio zibethinus OX=66656 GN=LOC111281647 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-34
Identity = 78/241 (32.37%), Postives = 144/241 (59.75%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           R V   +  +    Q+ +++ +++P  +TL  D H GH +I+ CF  F  +  +L++  +
Sbjct: 320 RAVQKFMERISTQEQRSILLSVLKPIAVTLTNDIH-GHHIIEQCFNKFSNEDTKLLVDEI 379

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
            ++CL++A  ++ CC+LQ+C++++    R+    L++ +  + + LS+HPYGNYV+Q+++
Sbjct: 380 VEHCLDIATDKSGCCVLQQCLDHAKAEARKR---LLAEITANAFVLSEHPYGNYVVQYVL 439

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCL-SCCEGISNDIIFEILEGNGRDRL 190
            +   ++   II  L   +V LSM+KYGSNVVEKCL    EG S  II EI+        
Sbjct: 440 GMRVPHVTSNIIVHLGGSYVTLSMNKYGSNVVEKCLKDAGEGHSARIITEIMHD---PDF 499

Query: 191 IQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKKAK 250
           +++  + YGN+VVQ+ + ++KG +   L + I+ H+  L  HL+G+ V++  +  K + +
Sbjct: 500 LKVLQDPYGNYVVQSALHVSKGDLHNTLVEFIQRHYPFLHSHLFGKKVLARTKWRKNRLR 553

[Close]

BLAST of CsaV3_7G008000 vs. ExPASy TrEMBL
Match: A0A6P6W406 (putative pumilio homolog 8, chloroplastic OS=Coffea arabica OX=13443 GN=LOC113728679 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.6e-34
Identity = 84/238 (35.29%), Postives = 140/238 (58.82%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           R +  L+ H+  P Q+ +++  +R   +TL K  ++GH V++ C + F  +  + I+  V
Sbjct: 399 RAMQKLLGHVTTPEQRSLVISALRRITVTLTKS-NNGHHVVEHCLKYFPIEDKKYILDVV 458

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
           A NCL++A  ++ CC+LQ+C+E++    R   + LI+ +  +   LS+HPYGNYV+QF+I
Sbjct: 459 ADNCLDIATDKSGCCVLQQCVEHARGEPR---DRLIAEITANALVLSEHPYGNYVVQFII 518

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCL-SCCEGISNDIIFEILEGNGRDRL 190
            L    I   I+ +L   +V LSM+KYGSNVVEKC+    E  +  II EI+   G    
Sbjct: 519 GLQIPYITSDILSQLAGNYVSLSMNKYGSNVVEKCMKESSEEQAMQIIKEII---GSQNF 578

Query: 191 IQICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDKKK 248
           + +  + +GN+V Q+  +IAKG IR  +   I+ H+  L  H +G+ V++  R  K++
Sbjct: 579 LTVLQDPFGNYVAQSAFAIAKGSIRHAMINLIQMHYSYLHSHPHGKRVLARARGSKQR 629

[Close]

BLAST of CsaV3_7G008000 vs. TAIR 10
Match: AT1G22240.1 (pumilio 8 )

HSP 1 Score: 126.3 bits (316), Expect = 3.5e-29
Identity = 72/229 (31.44%), Postives = 127/229 (55.46%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           R+V  L+  +K   Q  ++   +RP  L L +D +  H VI+ C Q    + NE I    
Sbjct: 289 RVVQRLVESIKTRKQISLVKSALRPGFLNLIRDLNGNH-VIQRCLQCLSTEDNEFIFEDA 348

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
            + C+++A  +  CC+LQ+CI YS+   R   E L++ + ++   L++ PYGNY +QF++
Sbjct: 349 TKFCIDIATHRHGCCVLQKCIAYSSGLQR---EKLVTEISRNSLFLAQDPYGNYAVQFVL 408

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEGNGRDRLI 190
           +L   +    ++ +L   +VELSM K+ S++VE+CL+ C      I+ E++     D LI
Sbjct: 409 ELRDFSAIAAMLAQLKGHYVELSMQKFSSHMVERCLTHCPESRPQIVRELISVPHFDILI 468

Query: 191 QICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVIS 240
           Q   + Y NFV+Q  +++ KG +   L + I+ H  +L+ + Y + + S
Sbjct: 469 Q---DPYANFVIQAALAVTKGSLHATLVEVIRPH-SILRNNPYCKRIFS 509

[Close]

BLAST of CsaV3_7G008000 vs. TAIR 10
Match: AT1G78160.1 (pumilio 7 )

HSP 1 Score: 124.8 bits (312), Expect = 1.0e-28
Identity = 73/229 (31.88%), Postives = 128/229 (55.90%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           R+V  L+  ++   Q  ++ L +RP  L L KD +  H VI+ C Q    + N+ I    
Sbjct: 424 RVVQRLVETIRSGKQISLVKLALRPGFLDLIKDLNGNH-VIQRCLQCLSTEDNKFIFDAA 483

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
            + C E+A  +  CC+LQ+CI YS   +RQ +E LI+ + ++   L++ P+GNY +QF+I
Sbjct: 484 TKFCTEIATHRHGCCVLQKCIAYS---MRQQREKLIAEISRNSLLLAQDPFGNYAVQFVI 543

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEGNGRDRLI 190
           +L   +    ++ +L   +V+LSM K+ S++VE+CL  C      I+ E++     D+L+
Sbjct: 544 ELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMHCPESRPQIVRELVSVPHFDQLL 603

Query: 191 QICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVIS 240
           Q   + Y NFV+Q  ++  KG +   L + I+ H  +L+ + Y + + S
Sbjct: 604 Q---DPYANFVIQAALAATKGPLHASLVEVIRPH-SILRNNPYCKRIFS 644

[Close]

BLAST of CsaV3_7G008000 vs. TAIR 10
Match: AT5G56510.1 (pumilio 12 )

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-28
Identity = 74/235 (31.49%), Postives = 124/235 (52.77%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           R V  ++   K   +  +I+  ++  ++ L K+ +  H V++ C Q  LP   + +    
Sbjct: 368 RAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNH-VVQRCLQYLLPYCGKFLFEAA 427

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
             +C+ELA  +  CC+LQ+C+ YS    +Q    L+S +  +   LS+ P+GNYV+Q++ 
Sbjct: 428 ITHCVELATDRHGCCVLQKCLGYSEGEQKQ---HLVSEIASNALLLSQDPFGNYVLQYVF 487

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEGNGRDRLI 190
           +L        I+++L   + ELSM K  SNVVEKCL   +      I   L   G  RL 
Sbjct: 488 ELQLQWATFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYG--RLD 547

Query: 191 QICTNQYGNFVVQTVMSIAKGKIRKLLEKAIKSHWLVLQQHLYGRNVISSIRRDK 246
           Q+  + YGN+V+Q  +  +KG +  LL  AIK +   L+ + YG+ V+S++   K
Sbjct: 548 QVMLDPYGNYVIQAALKQSKGNVHALLVDAIKLNISSLRTNPYGKKVLSALSSKK 596

[Close]

BLAST of CsaV3_7G008000 vs. TAIR 10
Match: AT1G35730.1 (pumilio 9 )

HSP 1 Score: 109.4 bits (272), Expect = 4.4e-24
Identity = 66/213 (30.99%), Postives = 119/213 (55.87%), Query Frame = 0


Query: 11  RLVVALISHLKYPCQQWMIVLLMRPHVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRV 70
           R+V  +I  +K   Q  ++   ++P  L L KD +  H VI+SC Q   P  NE ++   
Sbjct: 340 RVVQKMIETVKTKQQIALVKSGLKPGFLALVKDLNGNH-VIQSCLQTLGPNDNEFVLEAA 399

Query: 71  AQNCLELARGQASCCILQECIEYSNNNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMI 130
            + C E+A  +  CC+LQ CI   +N++   +E L++ + ++   LS+ P+GNYV+Q++I
Sbjct: 400 TKYCAEIAIHRHGCCVLQCCI---SNSVGLQRERLVAEISRNSLHLSQDPFGNYVVQYLI 459

Query: 131 QLDGTNIGRRIIKELTHKFVELSMDKYGSNVVEKCLSCCEGISNDIIFEILEGNGRDRLI 190
               + +  +++ +    + EL+  K+ S+V+EKCL        +I+ E+L     + L+
Sbjct: 460 DQQVSAV--KLLVQFRMHYAELATQKFSSHVIEKCLRKYPESRAEIVRELLCVPNFEYLL 519

Query: 191 QICTNQYGNFVVQTVMSIAKGKIR-KLLEKAIK 223
           Q   + Y N+V+QT +S+ KG +R KL+ K  +
Sbjct: 520 Q---DPYANYVIQTALSVTKGPVRAKLVAKVYR 543

[Close]

BLAST of CsaV3_7G008000 vs. TAIR 10
Match: AT3G20250.1 (pumilio 5 )

HSP 1 Score: 102.4 bits (254), Expect = 5.3e-22
Identity = 55/206 (26.70%), Postives = 112/206 (54.37%), Query Frame = 0


Query: 36  HVLTLAKDFHSGHRVIKSCFQNFLPQSNELIILRVAQNCLELARGQASCCILQECIEYSN 95
           +VL   +D  +G+ VI+ C ++        +I         L+     C ++Q  +E+ +
Sbjct: 740 NVLKCVRD-QNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCS 799

Query: 96  NNLRQLQEVLISPLIQDVYDLSKHPYGNYVIQFMIQLDGTNIGRRIIKELTHKFVELSMD 155
           ++  +    +I  +++  + L+   YGNYV Q +++    +  R+II++LT   V++S  
Sbjct: 800 DD--EETHCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQH 859

Query: 156 KYGSNVVEKCLSCCEGISNDIIFEILEGNGRD--RLIQICTNQYGNFVVQTVMSIAKGKI 215
           KY SNVVEKCL   +    + + E + G   +   L+ +  +Q+ N+VVQ V+ I+K + 
Sbjct: 860 KYASNVVEKCLEHADSTEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQ 919

Query: 216 RKLLEKAIKSHWLVLQQHLYGRNVIS 240
           R++L + +K H   L+++ YG+++++
Sbjct: 920 REILVQRMKIHLQSLRKYTYGKHIVA 942

The following BLAST results are available for this feature:

BLAST of CsaV3_7G008000 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645845.1	1.4e-141	100.00	hypothetical protein Csa_017253 [Cucumis sativus]	[more]
XP_008455521.1	3.7e-73	84.15	PREDICTED: putative pumilio homolog 8, chloroplastic [Cucumis melo]	[more]
XP_022148742.1	4.3e-50	45.64	pumilio homolog 12-like [Momordica charantia]	[more]
XP_020552057.1	4.4e-34	34.60	putative pumilio homolog 8, chloroplastic [Sesamum indicum]	[more]
XP_022725062.1	5.7e-34	32.37	putative pumilio homolog 8, chloroplastic [Durio zibethinus]	[more]

BLAST of CsaV3_7G008000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LM20	4.9e-28	31.44	Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APU...	[more]
Q9C9R6	1.4e-27	31.88	Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APU...	[more]
Q9LVC3	1.8e-27	31.49	Pumilio homolog 12 OS=Arabidopsis thaliana OX=3702 GN=APUM12 PE=2 SV=2	[more]
P0DN95	1.7e-25	32.84	Pumilio homolog 15 OS=Arabidopsis thaliana OX=3702 GN=APUM15 PE=3 SV=1	[more]
P25339	4.7e-23	30.05	Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae (strain ATCC...	[more]

BLAST of CsaV3_7G008000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7S4	8.1e-103	99.48	PUM-HD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071550 PE=4...	[more]
A0A1S3C139	1.8e-73	84.15	putative pumilio homolog 8, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10349567...	[more]
A0A6J1D5W5	2.1e-50	45.64	pumilio homolog 12-like OS=Momordica charantia OX=3673 GN=LOC111017335 PE=4 SV=1	[more]
A0A6P5XBS2	2.8e-34	32.37	putative pumilio homolog 8, chloroplastic OS=Durio zibethinus OX=66656 GN=LOC111...	[more]
A0A6P6W406	3.6e-34	35.29	putative pumilio homolog 8, chloroplastic OS=Coffea arabica OX=13443 GN=LOC11372...	[more]

BLAST of CsaV3_7G008000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22240.1	3.5e-29	31.44	pumilio 8	[more]
AT1G78160.1	1.0e-28	31.88	pumilio 7	[more]
AT5G56510.1	1.3e-28	31.49	pumilio 12	[more]
AT1G35730.1	4.4e-24	30.99	pumilio 9	[more]
AT3G20250.1	5.3e-22	26.70	pumilio 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001313	Pumilio RNA-binding repeat	SMART	SM00025	pum_5	coord: 144..179 e-value: 4.3E-5 score: 32.9 coord: 32..68 e-value: 110.0 score: 5.0 coord: 108..143 e-value: 0.021 score: 24.0 coord: 184..219 e-value: 0.16 score: 21.1 coord: 69..103 e-value: 36.0 score: 8.6
IPR001313	Pumilio RNA-binding repeat	PFAM	PF00806	PUF	coord: 149..179 e-value: 3.6E-8 score: 32.9 coord: 189..207 e-value: 0.023 score: 14.4 coord: 113..145 e-value: 5.7E-6 score: 25.9 coord: 73..100 e-value: 0.0019 score: 17.9
IPR001313	Pumilio RNA-binding repeat	PROSITE	PS50302	PUM	coord: 144..179 score: 10.110456
IPR001313	Pumilio RNA-binding repeat	PROSITE	PS50302	PUM	coord: 108..143 score: 9.107206
IPR001313	Pumilio RNA-binding repeat	PROSITE	PS50302	PUM	coord: 184..219 score: 8.360601
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 4..251 e-value: 1.6E-54 score: 187.2
None	No IPR available	PANTHER	PTHR12537	RNA BINDING PROTEIN PUMILIO-RELATED	coord: 11..242
None	No IPR available	PANTHER	PTHR12537:SF147	PUMILIO HOMOLOG 12	coord: 11..242
IPR033133	Pumilio homology domain	PROSITE	PS50303	PUM_HD	coord: 1..245 score: 41.938999
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 16..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G008000.1	CsaV3_7G008000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding