CsaV3_7G007840 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_7G007840
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Epidermal patterning factor-like protein
Location	chr7: 4900577 .. 4900913 (-)
RNA-Seq Expression	CsaV3_7G007840
Synteny	CsaV3_7G007840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCATCACCACCACCACCTGTAAGTCACTCATTTTTATATGTAATTTTGGAGCGTTTGTTTGATGTTTTCCTTCAGACTTATGTTGTTTTTGTAATGAACTTTTGAAAAGGAAGGAGAGGGAGTTGGAAGCCACAAAGGTGTGTATAAAAGGAGGCATAAAAGGAAGGGATCATTTCCAGGAGTTTGTGATTCAAAGTGCAACAAATGCAAACCTTGCAAGCTTGTTCAAGTATCTGTTAGATCCAATATGGACTTGGTTGAGAATAATAATATTGAGTACTATCCTCAAGTATGGAGGTGCATGTGTCATCACAATATTTTTTTCCCTTAA

mRNA sequence

ATGCCTCCATCACCACCACCACCTGAAGGAGAGGGAGTTGGAAGCCACAAAGGTGTGTATAAAAGGAGGCATAAAAGGAAGGGATCATTTCCAGGAGTTTGTGATTCAAAGTGCAACAAATGCAAACCTTGCAAGCTTGTTCAAGTATCTGTTAGATCCAATATGGACTTGGTTGAGAATAATAATATTGAGTACTATCCTCAAGTATGGAGGTGCATGTGTCATCACAATATTTTTTTCCCTTAA

Coding sequence (CDS)

ATGCCTCCATCACCACCACCACCTGAAGGAGAGGGAGTTGGAAGCCACAAAGGTGTGTATAAAAGGAGGCATAAAAGGAAGGGATCATTTCCAGGAGTTTGTGATTCAAAGTGCAACAAATGCAAACCTTGCAAGCTTGTTCAAGTATCTGTTAGATCCAATATGGACTTGGTTGAGAATAATAATATTGAGTACTATCCTCAAGTATGGAGGTGCATGTGTCATCACAATATTTTTTTCCCTTAA

Protein sequence

MPPSPPPPEGEGVGSHKGVYKRRHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVENNNIEYYPQVWRCMCHHNIFFP*

Homology

[Close]

BLAST of CsaV3_7G007840 vs. NCBI nr
Match: KAE8645843.1 (hypothetical protein Csa_017281 [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 8.2e-43
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 1  MPPSPPPPEGEGVGSHKGVYKRRHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVEN 60
          MPPSPPPPEGEGVGSHKGVYKRRHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVEN
Sbjct: 1  MPPSPPPPEGEGVGSHKGVYKRRHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVEN 60

Query: 61 NNIEYYPQVWRCMCHHNIFFP 82
          NNIEYYPQVWRCMCHHNIFFP
Sbjct: 61 NNIEYYPQVWRCMCHHNIFFP 81

[Close]

BLAST of CsaV3_7G007840 vs. NCBI nr
Match: KAG6571922.1 (EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 8.8e-29
Identity = 64/76 (84.21%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 6   PPPEGEGVGSHKGVYKRRHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVENNNIEY 65
           P PEGEG G HKGV  R+H RKGSFPG CDSKCN+CKPCKLVQVSVRS M+LVE NNIEY
Sbjct: 47  PAPEGEGNGGHKGVVGRKHMRKGSFPGDCDSKCNQCKPCKLVQVSVRS-MNLVE-NNIEY 106

Query: 66  YPQVWRCMCHHNIFFP 82
           YPQVWRCMCHHNIFFP
Sbjct: 107 YPQVWRCMCHHNIFFP 120

[Close]

BLAST of CsaV3_7G007840 vs. NCBI nr
Match: KAG7011608.1 (EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.7 bits (343), Expect = 8.8e-29
Identity = 64/76 (84.21%), Postives = 67/76 (88.16%), Query Frame = 0


Query: 6   PPPEGEGVGSHKGVYKRRHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVENNNIEY 65
           P PEGEG G HKGV  R+H RKGSFPG CDSKCN+CKPCKLVQVSVRS M+LVE NNIEY
Sbjct: 35  PAPEGEGNGGHKGVVGRKHMRKGSFPGDCDSKCNQCKPCKLVQVSVRS-MNLVE-NNIEY 94

Query: 66  YPQVWRCMCHHNIFFP 82
           YPQVWRCMCHHNIFFP
Sbjct: 95  YPQVWRCMCHHNIFFP 108

[Close]

BLAST of CsaV3_7G007840 vs. NCBI nr
Match: XP_019074391.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Vitis vinifera] >XP_034681803.1 EPIDERMAL PATTERNING FACTOR-like protein 4 [Vitis riparia])

HSP 1 Score: 80.9 bits (198), Expect = 5.7e-12
Identity = 41/82 (50.00%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 3   PSPP-PPEGEGVGSHKGVYKR--RHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVE 62
           PSP  P  GE +G  K +++R     R+GSFP  C SKCN+C PC  V+V+VR    + E
Sbjct: 33  PSPAVPVNGEPIGMEKNLFERGSEKARRGSFPARCHSKCNQCMPCMPVEVTVR----VEE 92

Query: 63  NNNIEYYPQVWRCMCHHNIFFP 82
               EYYPQVWRCMCH  +F P
Sbjct: 93  QEENEYYPQVWRCMCHDTMFSP 110

[Close]

BLAST of CsaV3_7G007840 vs. NCBI nr
Match: RVW72425.1 (putative beta-D-xylosidase 5 [Vitis vinifera])

HSP 1 Score: 80.9 bits (198), Expect = 5.7e-12
Identity = 41/82 (50.00%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 3   PSPP-PPEGEGVGSHKGVYKR--RHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVE 62
           PSP  P  GE +G  K +++R     R+GSFP  C SKCN+C PC  V+V+VR    + E
Sbjct: 872 PSPAVPVNGEPIGMEKNLFERGSEKARRGSFPARCHSKCNQCMPCMPVEVTVR----VEE 931

Query: 63  NNNIEYYPQVWRCMCHHNIFFP 82
               EYYPQVWRCMCH  +F P
Sbjct: 932 QEENEYYPQVWRCMCHDTMFSP 949

[Close]

BLAST of CsaV3_7G007840 vs. ExPASy Swiss-Prot
Match: Q2V3I3 (EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EPFL4 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-09
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 10  GEGVGSH-KGVYKRRHKR---KGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVENNNIEY 69
           G+  GS   G + R +KR    GS P  C SKC KC+PCK V V ++  + +     +EY
Sbjct: 38  GQRTGSDLPGGFIRSNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSM----PLEY 97

Query: 70  YPQVWRCMCHHNIFFP 82
           YP+ WRC C + +F P
Sbjct: 98  YPEAWRCKCGNKLFMP 109

[Close]

BLAST of CsaV3_7G007840 vs. ExPASy Swiss-Prot
Match: Q9LUH9 (EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EPFL5 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-08
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 19  VYKRRHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVENNNIEYYPQVWRCMCHHNI 78
           V ++R    GS P +C  KC KC+PCK V V ++  + +     +EYYP+ WRC C + +
Sbjct: 49  VDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIM----PLEYYPEAWRCKCGNKL 107

Query: 79  FFP 82
           F P
Sbjct: 109 FMP 107

[Close]

BLAST of CsaV3_7G007840 vs. ExPASy TrEMBL
Match: A5AHE5 (Fn3_like domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_035506 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12
Identity = 41/82 (50.00%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 3   PSPP-PPEGEGVGSHKGVYKR--RHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVE 62
           PSP  P  GE +G  K +++R     R+GSFP  C SKCN+C PC  V+V+VR    + E
Sbjct: 848 PSPAVPVNGEPIGMEKSLFERGSEKARRGSFPAHCHSKCNQCMPCMPVEVTVR----VEE 907

Query: 63  NNNIEYYPQVWRCMCHHNIFFP 82
               EYYPQVWRCMCH  +F P
Sbjct: 908 QEENEYYPQVWRCMCHDTMFSP 925

[Close]

BLAST of CsaV3_7G007840 vs. ExPASy TrEMBL
Match: A0A438GJP6 (Putative beta-D-xylosidase 5 OS=Vitis vinifera OX=29760 GN=BXL5_5 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12
Identity = 41/82 (50.00%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 3   PSPP-PPEGEGVGSHKGVYKR--RHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVE 62
           PSP  P  GE +G  K +++R     R+GSFP  C SKCN+C PC  V+V+VR    + E
Sbjct: 872 PSPAVPVNGEPIGMEKNLFERGSEKARRGSFPARCHSKCNQCMPCMPVEVTVR----VEE 931

Query: 63  NNNIEYYPQVWRCMCHHNIFFP 82
               EYYPQVWRCMCH  +F P
Sbjct: 932 QEENEYYPQVWRCMCHDTMFSP 949

[Close]

BLAST of CsaV3_7G007840 vs. ExPASy TrEMBL
Match: D7SXR0 (Fn3_like domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_03s0091g00750 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.8e-12
Identity = 41/82 (50.00%), Postives = 51/82 (62.20%), Query Frame = 0


Query: 3   PSPP-PPEGEGVGSHKGVYKR--RHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVE 62
           PSP  P  GE +G  K +++R     R+GSFP  C SKCN+C PC  V+V+VR    + E
Sbjct: 819 PSPAVPVNGEPIGMEKNLFERGSEKARRGSFPARCHSKCNQCMPCMPVEVTVR----VEE 878

Query: 63  NNNIEYYPQVWRCMCHHNIFFP 82
               EYYPQVWRCMCH  +F P
Sbjct: 879 QEENEYYPQVWRCMCHDTMFSP 896

[Close]

BLAST of CsaV3_7G007840 vs. ExPASy TrEMBL
Match: A0A2P6PLG8 (Epidermal patterning factor-like protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0253751 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.2e-12
Identity = 44/81 (54.32%), Postives = 53/81 (65.43%), Query Frame = 0


Query: 3   PSPPPPEGEGVGSH--KGVYKRRHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVEN 62
           PSP P  G        KG++K+  KR+GSFP  C SKCN+C+PC  VQVSVR+ M+L EN
Sbjct: 36  PSPSPALGMPTPHEPSKGIFKK--KRRGSFPATCYSKCNQCEPCMPVQVSVRA-MELEEN 95

Query: 63  NNIEYYPQVWRCMCHHNIFFP 82
              EYYP VW+C C  NIF P
Sbjct: 96  ---EYYPLVWKCACGDNIFSP 110

[Close]

BLAST of CsaV3_7G007840 vs. ExPASy TrEMBL
Match: A0A6A1V6A3 (Epidermal patterning factor-like protein OS=Morella rubra OX=262757 GN=CJ030_MR7G001341 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.4e-11
Identity = 43/84 (51.19%), Postives = 52/84 (61.90%), Query Frame = 0


Query: 3   PSPPPPEGEGVGSH-----KGVYKRRHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDL 62
           PSP P  G  +G H     KG    +  R GSFP  C SKCN+C+PC  V+VSVR+    
Sbjct: 34  PSPAPESGVQIGHHDPKPSKGRNDGKTMR-GSFPAKCHSKCNQCRPCMPVEVSVRAM--A 93

Query: 63  VENNNIEYYPQVWRCMCHHNIFFP 82
           +ENN  EYYPQVW+CMC  N+F P
Sbjct: 94  LENN--EYYPQVWKCMCRDNLFSP 112

[Close]

BLAST of CsaV3_7G007840 vs. TAIR 10
Match: AT4G14723.1 (BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-10
Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 10  GEGVGSH-KGVYKRRHKR---KGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVENNNIEY 69
           G+  GS   G + R +KR    GS P  C SKC KC+PCK V V ++  + +     +EY
Sbjct: 38  GQRTGSDLPGGFIRSNKRFGGPGSSPPTCRSKCGKCQPCKPVHVPIQPGLSM----PLEY 97

Query: 70  YPQVWRCMCHHNIFFP 82
           YP+ WRC C + +F P
Sbjct: 98  YPEAWRCKCGNKLFMP 109

[Close]

BLAST of CsaV3_7G007840 vs. TAIR 10
Match: AT3G22820.1 (allergen-related )

HSP 1 Score: 59.3 bits (142), Expect = 1.7e-09
Identity = 25/63 (39.68%), Postives = 37/63 (58.73%), Query Frame = 0


Query: 19  VYKRRHKRKGSFPGVCDSKCNKCKPCKLVQVSVRSNMDLVENNNIEYYPQVWRCMCHHNI 78
           V ++R    GS P +C  KC KC+PCK V V ++  + +     +EYYP+ WRC C + +
Sbjct: 49  VDQKRLGGPGSVPPMCRLKCGKCEPCKAVHVPIQPGLIM----PLEYYPEAWRCKCGNKL 107

Query: 79  FFP 82
           F P
Sbjct: 109 FMP 107

The following BLAST results are available for this feature:

BLAST of CsaV3_7G007840 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645843.1	8.2e-43	100.00	hypothetical protein Csa_017281 [Cucumis sativus]	[more]
KAG6571922.1	8.8e-29	84.21	EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subs...	[more]
KAG7011608.1	8.8e-29	84.21	EPIDERMAL PATTERNING FACTOR-like protein 4, partial [Cucurbita argyrosperma subs...	[more]
XP_019074391.1	5.7e-12	50.00	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 4 [Vitis vinifera] >XP_03468...	[more]
RVW72425.1	5.7e-12	50.00	putative beta-D-xylosidase 5 [Vitis vinifera]	[more]

BLAST of CsaV3_7G007840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2V3I3	2.8e-09	40.79	EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q9LUH9	2.3e-08	39.68	EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of CsaV3_7G007840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5AHE5	2.8e-12	50.00	Fn3_like domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_035506 P...	[more]
A0A438GJP6	2.8e-12	50.00	Putative beta-D-xylosidase 5 OS=Vitis vinifera OX=29760 GN=BXL5_5 PE=3 SV=1	[more]
D7SXR0	2.8e-12	50.00	Fn3_like domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_03s0091g007...	[more]
A0A2P6PLG8	6.2e-12	54.32	Epidermal patterning factor-like protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_...	[more]
A0A6A1V6A3	1.4e-11	51.19	Epidermal patterning factor-like protein OS=Morella rubra OX=262757 GN=CJ030_MR7...	[more]

BLAST of CsaV3_7G007840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G14723.1	2.0e-10	40.79	BEST Arabidopsis thaliana protein match is: allergen-related (TAIR:AT3G22820.1);...	[more]
AT3G22820.1	1.7e-09	39.68	allergen-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 27..81 e-value: 1.4E-16 score: 60.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR33109:SF49	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 21..81
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 21..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G007840.1	CsaV3_7G007840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010374	stomatal complex development